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Alternative splicing tends to avoid partial removals of protein-protein interaction sites.
- Published in:
- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-379
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- Article
Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities.
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- BMC Bioinformatics, 2012, v. 13, n. Suppl 4, p. 1, doi. 10.1186/1471-2105-13-S4-S17
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- Article
DBATE: database of alternative transcripts expression.
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- Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat050
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- Article
A Meta-Analysis Approach to Gene Regulatory Network Inference Identifies Key Regulators of Cardiovascular Diseases.
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- International Journal of Molecular Sciences, 2024, v. 25, n. 8, p. 4224, doi. 10.3390/ijms25084224
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- Article
FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S2-S2
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- Article
Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites.
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- BMC Bioinformatics, 2007, v. 8, p. S24, doi. 10.1186/1471-2105-8-S1-S24
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- Article
Query3d: a new method for high-throughput analysis of functional residues in protein structures.
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- BMC Bioinformatics, 2005, v. 6, p. S5, doi. 10.1186/1471-2105-6-S4-S5
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- Article
A neural strategy for the inference of SH3 domain-peptide interaction specificity.
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- BMC Bioinformatics, 2005, v. 6, p. S13, doi. 10.1186/1471-2105-6-S4-S13
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- Article
Functional annotation by identification of local surface similarities: a novel tool for structural genomics.
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- BMC Bioinformatics, 2005, v. 6, p. 194, doi. 10.1186/1471-2105-6-194
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- Article
Kinome-wide identification of phosphorylation networks in eukaryotic proteomes.
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- Bioinformatics, 2019, v. 35, n. 3, p. 372, doi. 10.1093/bioinformatics/bty545
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- Article
BEAM web server: a tool for structural RNA motif discovery.
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- Bioinformatics, 2018, v. 34, n. 6, p. 1058, doi. 10.1093/bioinformatics/btx704
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- Article
Modeling cancer drug response through drug-specific informative genes.
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- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-50720-0
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- Article
Identification of Nucleotide-Binding Sites in Protein Structures: A Novel Approach Based on Nucleotide Modularity.
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- PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0050240
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- Article
Superpose3D: A Local Structural Comparison Program That Allows for User-Defined Structure Representations.
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- PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0011988
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- Article
BRIO: a web server for RNA sequence and structure motif scan.
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- Nucleic Acids Research, 2021, v. 49, n. W1, p. W67, doi. 10.1093/nar/gkab400
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- Article
Discovering sequence and structure landscapes in RNA interaction motifs.
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- Nucleic Acids Research, 2019, v. 47, n. 10, p. 4958, doi. 10.1093/nar/gkz250
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- Article
A novel approach to represent and compare RNA secondary structures.
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- Nucleic Acids Research, 2014, v. 42, n. 10, p. 6146, doi. 10.1093/nar/gku283
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- Article
Nucleos: a web server for the identification of nucleotide-binding sites in protein structures.
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- Nucleic Acids Research, 2013, v. 41, p. W281, doi. 10.1093/nar/gkt390
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- Article
Phosfinder: a web server for the identification of phosphate-binding sites on protein structures.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W278, doi. 10.1093/nar/gkr389
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- Article
Phosphate binding sites identification in protein structures.
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- Nucleic Acids Research, 2011, v. 39, n. 4, p. 1231, doi. 10.1093/nar/gkq987
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- Article
B-Pred, a structure based B-cell epitopes prediction server.
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- Advances & Applications in Bioinformatics & Chemistry, 2012, v. 5, p. 11, doi. 10.2147/AABC.S30620
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- Article
Modular architecture of nucleotide-binding pockets.
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- Nucleic Acids Research, 2010, v. 38, n. 11, p. 3809, doi. 10.1093/nar/gkq090
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- Article
SH3-Hunter: discovery of SH3 domain interaction sites in proteins.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W451, doi. 10.1093/nar/gkm296
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- Article
3dLOGO: a web server for the identification, analysis and use of conserved protein substructures.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W416, doi. 10.1093/nar/gkm228
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- Article
Phospho3D: a database of three-dimensional structures of protein phosphorylation sites.
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- Nucleic Acids Research, 2007, v. 35, p. d229, doi. 10.1093/nar/gkl922
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- Article
pdbFun: mass selection and fast comparison of annotated PDB residues.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w133, doi. 10.1093/nar/gki499
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- Article
SURFACE: a database of protein surface regions for functional annotation.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d240
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- Article
ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins.
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- Nucleic Acids Research, 2003, v. 31, n. 13, p. 3625, doi. 10.1093/nar/gkg545
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- Article
Revisiting the "satisfaction of spatial restraints" approach of MODELLER for protein homology modeling.
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- PLoS Computational Biology, 2019, v. 15, n. 12, p. 1, doi. 10.1371/journal.pcbi.1007219
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- Article
MINT: a Molecular INTeraction database
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- FEBS Letters, 2002, v. 513, n. 1, p. 135, doi. 10.1016/S0014-5793(01)03293-8
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- Article