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Gene Loss and Evolutionary Rates Following Whole-Genome Duplication in Teleost Fishes.
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- Molecular Biology & Evolution, 2006, v. 23, n. 9, p. 1808, doi. 10.1093/molbev/msl049
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- Article
De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing.
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- Plant Cell, 2017, v. 29, n. 10, p. 2336, doi. 10.1105/tpc.17.00521
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- Article
Host transcriptomic plasticity and photosymbiotic fidelity underpin Pocillopora acclimatization across thermal regimes in the Pacific Ocean.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38610-6
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Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38502-9
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- Article
Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38499-1
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- Article
Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite.
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- Genome Biology, 2011, v. 12, n. 3, p. 1, doi. 10.1186/gb-2011-12-3-r29
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- Article
Genome assembly using Nanopore-guided long and error-free DNA reads.
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- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1519-z
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- Article
Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii.
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- BMC Genomics, 2015, v. 16, n. 1, p. 296, doi. 10.1186/s12864-015-1467-7
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- Article
Genome assembly using Nanopore-guided long and error-free DNA reads
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- BMC Genomics, 2015, v. 16, n. 1, p. 327, doi. 10.1186/s12864-015-1519-z
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Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data.
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- BMC Genomics, 2014, v. 15, n. 1, p. 912, doi. 10.1186/1471-2164-15-912
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BoardION: real-time monitoring of Oxford Nanopore sequencing instruments.
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- BMC Bioinformatics, 2021, p. 1, doi. 10.1186/s12859-021-04161-0
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- Article
Sequence diversity and evolution of a group of iflaviruses associated with ticks.
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- Archives of Virology, 2021, v. 166, n. 7, p. 1843, doi. 10.1007/s00705-021-05060-8
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- Article
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia.
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- Nature, 2006, v. 444, n. 7116, p. 171, doi. 10.1038/nature05230
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- Article
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype.
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- Nature, 2004, v. 431, n. 7011, p. 946, doi. 10.1038/nature03025
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- Article
Permanent draft genome sequence of the probiotic strain Propionibacterium freudenreichii CIRM-BIA 129 (ITG P20).
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- Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0120-z
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- Article
Epigenomic and structural events preclude recombination in Brassica napus.
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- New Phytologist, 2022, v. 234, n. 2, p. 545, doi. 10.1111/nph.18004
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Adaptive introgression as a driver of local adaptation to climate in European white oaks.
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- New Phytologist, 2020, v. 226, n. 4, p. 1171, doi. 10.1111/nph.16095
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Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers.
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- New Phytologist, 2020, v. 226, n. 4, p. 1183, doi. 10.1111/nph.16039
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- Article
Extensive recent secondary contacts between four European white oak species.
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- New Phytologist, 2017, v. 214, n. 2, p. 865, doi. 10.1111/nph.14413
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Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity in Brassica rapa.
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- Frontiers in Plant Science, 2020, v. 11, p. N.PAG, doi. 10.3389/fpls.2020.577536
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- Article
The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates.
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- Nature Communications, 2014, v. 5, n. 4, p. 3657, doi. 10.1038/ncomms4657
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- Article
Complete DNA Sequence of Kuraishia capsulata Illustrates Novel Genomic Features among Budding Yeasts (Saccharomycotina).
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- Genome Biology & Evolution, 2013, v. 5, n. 12, p. 2524, doi. 10.1093/gbe/evt201
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MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling™ Data.
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- BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-0969-x
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- Article
TE-Tracker: systematic identification of transposition events through whole-genome resequencing.
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- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/s12859-014-0377-z
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- Article
The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.
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- Nature, 2012, v. 488, n. 7410, p. 213, doi. 10.1038/nature11241
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The Ectocarpus genome and the independent evolution of multicellularity in brown algae.
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- Nature, 2010, v. 465, n. 7298, p. 617, doi. 10.1038/nature09016
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- Article
Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis.
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- Nature, 2010, v. 464, n. 7291, p. 1033, doi. 10.1038/nature08867
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Translational control of intron splicing in eukaryotes.
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- Nature, 2008, p. 359, doi. 10.1038/nature06495
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- Article
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
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- Nature, 2007, v. 449, n. 7161, p. 463, doi. 10.1038/nature06148
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LocoGSE, a sequence-based genome size estimator for plants.
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- Frontiers in Plant Science, 2024, p. 1, doi. 10.3389/fpls.2022.1001499
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- Article
LocoGSE, a sequence-based genome size estimator for plants.
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- Frontiers in Plant Science, 2024, p. 1, doi. 10.3389/fpls.2024.1328966
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- Article
Interspecific introgression patterns reveal the origins of worldwide cultivated bananas in New Guinea.
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- Plant Journal, 2023, v. 113, n. 4, p. 802, doi. 10.1111/tpj.16086
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- Article
Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole‐genome duplications in Brassica.
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- Plant Journal, 2019, v. 98, n. 3, p. 434, doi. 10.1111/tpj.14228
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- Article
High-Quality de Novo Genome Assembly of the Dekkera bruxellensis Yeast Using Nanopore MinION Sequencing.
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- G3: Genes | Genomes | Genetics, 2017, v. 7, n. 10, p. 3243, doi. 10.1534/g3.117.300128
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The genome of Theobroma cacao.
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- Nature Genetics, 2011, v. 43, n. 2, p. 101, doi. 10.1038/ng.736
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- Article
Improvement of the banana "Musa acuminata" reference sequence using NGS data and semi-automated bioinformatics methods.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2579-4
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Large-scale transcriptomics to dissect 2 years of the life of a fungal phytopathogen interacting with its host plant.
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- BMC Biology, 2021, v. 19, n. 1, p. 1, doi. 10.1186/s12915-021-00989-3
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Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp.
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- BMC Biology, 2021, v. 19, n. 1, p. 1, doi. 10.1186/s12915-020-00927-9
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- Article
Recurrent Domestication by Lepidoptera of Genes from Their Parasites Mediated by Bracoviruses.
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- PLoS Genetics, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pgen.1005470
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The Streamlined Genome of <i>Phytomonas</i> spp. Relative to Human Pathogenic Kinetoplastids Reveals a Parasite Tailored for Plants.
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- PLoS Genetics, 2014, v. 10, n. 2, p. 1, doi. 10.1371/journal.pgen.1004007
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- Article
The Paramecium Germline Genome Provides a Niche for Intragenic Parasitic DNA: Evolutionary Dynamics of Internal Eliminated Sequences.
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- PLoS Genetics, 2012, v. 8, n. 10, p. 1, doi. 10.1371/journal.pgen.1002984
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Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes.
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- PLoS Biology, 2021, v. 19, n. 7, p. 1, doi. 10.1371/journal.pbio.3001309
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Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence.
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- Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03939-z
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- Article
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data.
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- Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1164, doi. 10.1093/bib/bbz058
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- Article
Shared pedigree relationships and transmission of unreduced gametes in cultivated banana.
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- Annals of Botany, 2023, v. 131, n. 7, p. 1149, doi. 10.1093/aob/mcad065
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- Article
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita.
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- Nature Biotechnology, 2008, v. 26, n. 8, p. 909, doi. 10.1038/nbt.1482
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Spodoptera frugiperda (Lepidoptera: Noctuidae) host-plant variants: two host strains or two distinct species?
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- Genetica, 2015, v. 143, n. 3, p. 305, doi. 10.1007/s10709-015-9829-2
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Genoscope: caractériser les gènes et la chimie du vivant.
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- Clefs CEA (English), 2022, n. 74, p. 16
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- Article
Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-65941-x
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- Article
Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine Picocyanobacteria.
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- Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.567431
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- Article