Works by Audic, Stéphane

Results: 36

CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms

Published in:

PLoS Biology, 2012, v. 10, n. 11, p. 1, doi. 10.1371/journal.pbio.1001419

By:

Pawlowski, Jan;
Audic, Stéphane;
Adl, Sina;
Bass, David;
Belbahri, Lassaâd;
Berney, Cédric;
Bowser, Samuel S.;
Cepicka, Ivan;
Decelle, Johan;
Dunthorn, Micah;
Fiore-Donno, Anna Maria;
Gile, Gillian H.;
Holzmann, Maria;
Jahn, Regine;
Jirků, Miloslav;
Keeling, Patrick J.;
Kostka, Martin;
Kudryavtsev, Alexander;
Lara, Enrique;
Lukeš, Julius

Publication type:

Article

The Genome Sequence of Rickettsia felis Identifies the First Putative Conjugative Plasmid in an Obligate Intracellular Parasite.

Published in:

PLoS Biology, 2005, v. 3, n. 8, p. 1391, doi. 10.1371/journal.pbio.0030248

By:

Ogata, Hiroyuki;
Renesto, Patricia;
Audic, Stéphane;
Robert, Catherine;
Blanc, Guillaume;
Fournier, Pierre-Edouard;
Parinello, Hugues;
Claverie, Jean-Michel;
Raoult, Didier

Publication type:

Article

The Genome Sequence of Rickettsia felis Identifies the First Putative Conjugative Plasmid in an Obligate Intracellular Parasite.

Published in:

PLoS Biology, 2005, v. 3, n. 7, p. 1, doi. 10.1371/journal.pbio.0030248

By:

Ogata, Hiroyuki;
Renesto, Patricia;
Audic, Stéphane;
Robert, Catherine;
Blanc, Guillaume;
Fournier, Pierre-Edouard;
Parinello, Hugues;
Claverie, Jean-Michel;
Raoult, Didier

Publication type:

Article

Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms.

Published in:

BMC Biology, 2015, v. 13, n. 1, p. 1, doi. 10.1186/s12915-015-0125-5

By:

Forster, Dominik;
Bittner, Lucie;
Karkar, Slim;
Dunthorn, Micah;
Romac, Sarah;
Audic, Stéphane;
Lopez, Philippe;
Stoeck, Thorsten;
Bapteste, Eric

Publication type:

Article

The Protist Ribosomal Reference database (PR<sup>2</sup>): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy.

Published in:

Nucleic Acids Research, 2013, v. 41, p. D597, doi. 10.1093/nar/gks1160

By:

Guillou, Laure;
Bachar, Dipankar;
Audic, Stéphane;
Bass, David;
Berney, Cédric;
Bittner, Lucie;
Boutte, Christophe;
Burgaud, Gaétan;
de Vargas, Colomban;
Decelle, Johan;
del Campo, Javier;
Dolan, John R.;
Dunthorn, Micah;
Edvardsen, Bente;
Holzmann, Maria;
Kooistra, Wiebe H. C. F.;
Lara, Enrique;
Le Bescot, Noan;
Logares, Ramiro;
Mahé, Frédéric

Publication type:

Article

PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w600, doi. 10.1093/nar/gkl170

By:

Moretti, Sébastien;
Reinier, Frédéric;
Poirot, Olivier;
Armougom, Fabrice;
Audic, Stéphane;
Keduas, Vladimir;
Notredame, Cédric

Publication type:

Article

Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w604, doi. 10.1093/nar/gkl092

By:

Armougom, Fabrice;
Moretti, Sébastien;
Poirot, Olivier;
Audic, Stéphane;
Dumas, Pierre;
Schaeli, Basile;
Keduas, Vladimir;
Notredame, Cedric

Publication type:

Article

Impact of the tail and mutations G131V and M129V on prion protein flexibility.

Published in:

Proteins, 2003, v. 51, n. 2, p. 258, doi. 10.1002/prot.10348

By:

Sébastien Santini;
Jean-Baptiste Claude;
Stéphane Audic;
Philippe Derreumaux

Publication type:

Article

SAmBA: An interactive software for optimizing the design of biological macromolecules crystallization experiments.

Published in:

Proteins, 1997, v. 29, n. 2, p. 252, doi. 10.1002/(SICI)1097-0134(199710)29:2<252::AID-PROT12>3.0.CO;2-N

By:

Audic, Stéphane;
Lopez, Fabrice;
Claverie, Jean-Michel;
Poirot, Olivier;
Abergel, Chantal

Publication type:

Article

Diverse molecular signatures for ribosomally 'active' Perkinsea in marine sediments.

Published in:

BMC Microbiology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2180-14-110

By:

Chambouvet, Aurélie;
Berney, Cédric;
Romac, Sarah;
Audic, Stéphane;
Maguire, Finlay;
De Vargas, Colomban;
Richards, Thomas A.

Publication type:

Article

Genome-Wide Analysis of Heteroduplex DNA in Mismatch Repair-Deficient Yeast Cells Reveals Novel Properties of Meiotic Recombination Pathways.

Published in:

PLoS Genetics, 2011, v. 7, n. 9, p. 1, doi. 10.1371/journal.pgen.1002305

By:

Martini, Emmanuelle;
Borde, Valérie;
Legendre, Matthieu;
Audic, Stéphane;
Regnault, Béatrice;
Soubigou, Guillaume;
Dujon, Bernard;
Llorente, Bertrand

Publication type:

Article

The Genome of Borrelia recurrentis, the Agent of Deadly Louse-Borne Relapsing Fever, Is a Degraded Subset of Tick-Borne Borrelia duttonii.

Published in:

PLoS Genetics, 2008, v. 4, n. 9, p. 1, doi. 10.1371/journal.pgen.1000185

By:

Lescot, Magali;
Audic, Stéphane;
Robert, Catherine;
Thi Tien Nguyen;
Blanc, Guillaume;
Cutler, Sally J.;
Wincker, Patrick;
Couloux, Arnaud;
Claverie, Jean-Michel;
Raoult, Didier;
Drancourt, Michel

Publication type:

Article

Genome Analysis of Minibacterium massiliensis Highlights the Convergent Evolution of Water-Living Bacteria.

Published in:

PLoS Genetics, 2007, v. 3, n. 8, p. 1454, doi. 10.1371/journal.pgen.0030138

By:

Audic, Stéphane;
Robert, Catherine;
Campagna, Bernard;
Parinello, Hugues;
Claverie, Jean-Michel;
Raoult, Didier;
Drancourt, Michel

Publication type:

Article

Reductive Genome Evolution from the Mother of Rickettsia.

Published in:

PLoS Genetics, 2007, v. 3, n. 1, p. 103, doi. 10.1371/journal.pgen.0030014

By:

Blanc, Guillaume;
Ogata, Hiroyuki;
Robert, Catherine;
Audic, Stéphane;
Suhre, Karsten;
Vestris, Guy;
Claverie, Jean-Michel;
Raoult, Didier

Publication type:

Article

Genome Sequence of Rickettsia bellii Illuminates the Role of Amoebae in Gene Exchanges between Intracellular Pathogens.

Published in:

PLoS Genetics, 2006, v. 2, n. 5, p. e76, doi. 10.1371/journal.pgen.0020076

By:

Ogata, Hiroyuki;
La Scola, Bernard;
Audic, Stéphane;
Renesto, Patricia;
Blanc, Guillaume;
Robert, Catherine;
Fournier, Pierre-Edouard;
Claverie, Jean-Michel;
Raoult, Didier

Publication type:

Article

Comparative Genomics of Multidrug Resistance in Acinetobacter baumannii.

Published in:

PLoS Genetics, 2006, v. 2, n. 1, p. e7, doi. 10.1371/journal.pgen.0020007

By:

Fournier, Pierre-Edouard;
Vallenet, David;
Barbe, Valérie;
Audic, Stéphane;
Ogata, Hiroyuki;
Poirel, Laurent;
Richet, Hervé;
Robert, Catherine;
Mangenot, Sophie;
Abergel, Chantal;
Nordmann, Patrice;
Weissenbach, Jean;
Raoult, Didier;
Claverie, Jean-Michel;
Matic, Ivan

Publication type:

Article

Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding.

Published in:

Environmental Microbiology, 2016, v. 18, n. 2, p. 609, doi. 10.1111/1462-2920.13039

By:

Le Bescot, Noan;
Mahé, Frédéric;
Audic, Stéphane;
Dimier, Céline;
Garet, Marie ‐ José;
Poulain, Julie;
Wincker, Patrick;
Vargas, Colomban;
Siano, Raffaele

Publication type:

Article

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing.

Published in:

Environmental Microbiology, 2015, v. 17, n. 10, p. 4035, doi. 10.1111/1462-2920.12955

By:

Massana, Ramon;
Gobet, Angélique;
Audic, Stéphane;
Bass, David;
Bittner, Lucie;
Boutte, Christophe;
Chambouvet, Aurélie;
Christen, Richard;
Claverie, Jean ‐ Michel;
Decelle, Johan;
Dolan, John R.;
Dunthorn, Micah;
Edvardsen, Bente;
Forn, Irene;
Forster, Dominik;
Guillou, Laure;
Jaillon, Olivier;
Kooistra, Wiebe H. C. F.;
Logares, Ramiro;
Mahé, Frédéric

Publication type:

Article

The genome sequence of Brucella pinnipedialis B2/94 sheds light on the evolutionary history of the genus Brucella.

Published in:

BMC Evolutionary Biology, 2011, v. 11, n. 1, p. 200, doi. 10.1186/1471-2148-11-200

By:

Audic, Stéphane;
Lescot, Magali;
Claverie, Jean-Michel;
Cloeckaert, Axel;
Zygmunt, Michel S.

Publication type:

Article

Placing Environmental Next-Generation Sequencing Amplicons from Microbial Eukaryotes into a Phylogenetic Context.

Published in:

Molecular Biology & Evolution, 2014, v. 31, n. 4, p. 993, doi. 10.1093/molbev/msu055

By:

Dunthorn, Micah;
Otto, Johannes;
Berger, Simon A.;
Stamatakis, Alexandros;
Mahé, Frédéric;
Romac, Sarah;
de Vargas, Colomban;
Audic, Stéphane;
Consortium, BioMarKs;
Stock, Alexandra;
Kauff, Frank;
Stoeck, Thorsten

Publication type:

Article

Biogeography and diversity of Collodaria (Radiolaria) in the global ocean.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2017, v. 11, n. 6, p. 1331, doi. 10.1038/ismej.2017.12

By:

Biard, Tristan;
Bigeard, Estelle;
Audic, Stéphane;
Poulain, Julie;
Gutierrez-Rodriguez, Andres;
Pesant, Stéphane;
Stemmann, Lars;
Not, Fabrice

Publication type:

Article

Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 10, p. 2419, doi. 10.1038/ismej.2016.38

By:

Ichinomiya, Mutsuo;
dos Santos, Adriana Lopes;
Gourvil, Priscillia;
Yoshikawa, Shinya;
Kamiya, Mitsunobu;
Ohki, Kaori;
Audic, Stéphane;
de Vargas, Colomban;
Noël, Mary-Hélène;
Vaulot, Daniel;
Kuwata, Akira

Publication type:

Article

The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.).

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 6, p. 1424, doi. 10.1038/ismej.2015.211

By:

Mordret, Solenn;
Romac, Sarah;
Henry, Nicolas;
Colin, Sébastien;
Carmichael, Margaux;
Berney, Cédric;
Audic, Stéphane;
Richter, Daniel J;
Pochon, Xavier;
de Vargas, Colomban;
Decelle, Johan

Publication type:

Article

Global distribution and vertical patterns of a prymnesiophyte-cyanobacteria obligate symbiosis.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 3, p. 693, doi. 10.1038/ismej.2015.147

By:

Cabello, Ana M;
Cornejo-Castillo, Francisco M;
Raho, Nicolas;
Blasco, Dolors;
Vidal, Montserrat;
Audic, Stéphane;
de Vargas, Colomban;
Latasa, Mikel;
Acinas, Silvia G;
Massana, Ramon

Publication type:

Article

Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 6, p. 1365, doi. 10.1038/ismej.2014.221

By:

von Dassow, Peter;
John, Uwe;
Ogata, Hiroyuki;
Probert, Ian;
Bendif, El Mahdi;
Kegel, Jessica U;
Audic, Stéphane;
Wincker, Patrick;
Da Silva, Corinne;
Claverie, Jean-Michel;
Doney, Scott;
Glover, David M;
Flores, Daniella Mella;
Herrera, Yeritza;
Lescot, Magali;
Garet-Delmas, Marie-José;
de Vargas, Colomban

Publication type:

Article

Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 4, p. 854, doi. 10.1038/ismej.2013.204

By:

Massana, Ramon;
del Campo, Javier;
Sieracki, Michael E;
Audic, Stéphane;
Logares, Ramiro

Publication type:

Article

Phyto REF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy.

Published in:

Molecular Ecology Resources, 2015, v. 15, n. 6, p. 1435, doi. 10.1111/1755-0998.12401

By:

Decelle, Johan;
Romac, Sarah;
Stern, Rowena F.;
Bendif, El Mahdi;
Zingone, Adriana;
Audic, Stéphane;
Guiry, Michael D.;
Guillou, Laure;
Tessier, Désiré;
Le Gall, Florence;
Gourvil, Priscillia;
Dos Santos, Adriana L.;
Probert, Ian;
Vaulot, Daniel;
Vargas, Colomban;
Christen, Richard

Publication type:

Article

PFR<sup>2</sup>: a curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution.

Published in:

Molecular Ecology Resources, 2015, v. 15, n. 6, p. 1472, doi. 10.1111/1755-0998.12410

By:

Morard, Raphaël;
Darling, Kate F.;
Mahé, Frédéric;
Audic, Stéphane;
Ujiié, Yurika;
Weiner, Agnes K. M.;
André, Aurore;
Seears, Heidi A.;
Wade, Christopher M.;
Quillévéré, Frédéric;
Douady, Christophe J.;
Escarguel, Gilles;
Garidel‐Thoron, Thibault;
Siccha, Michael;
Kucera, Michal;
Vargas, Colomban

Publication type:

Article

Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay.

Published in:

Molecular Ecology, 2013, v. 22, n. 1, p. 87, doi. 10.1111/mec.12108

By:

Bittner, Lucie;
Gobet, Angélique;
Audic, Stéphane;
Romac, Sarah;
Egge, Elianne S.;
Santini, Sébastien;
Ogata, Hiroyuki;
Probert, Ian;
Edvardsen, Bente;
Vargas, Colomban

Publication type:

Article

MicRhoDE: a curated database for the analysis of microbial rhodopsin diversity and evolution.

Published in:

Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav080

By:

Boeuf, Dominique;
Audic, Stéphane;
Brillet-Guéguen, Loraine;
Caron, Christophe;
Jeanthon, Christian

Publication type:

Article

454 Pyrosequencing to Describe Microbial Eukaryotic Community Composition, Diversity and Relative Abundance: A Test for Marine Haptophytes.

Published in:

PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0074371

By:

Egge, Elianne;
Bittner, Lucie;
Andersen, Tom;
Audic, Stéphane;
de Vargas, Colomban;
Edvardsen, Bente

Publication type:

Article

UniEuk: Time to Speak a Common Language in Protistology!

Published in:

Journal of Eukaryotic Microbiology, 2017, v. 64, n. 3, p. 407, doi. 10.1111/jeu.12414

By:

Berney, Cédric;
Ciuprina, Andreea;
Bender, Sara;
Brodie, Juliet;
Edgcomb, Virginia;
Kim, Eunsoo;
Rajan, Jeena;
Parfrey, Laura Wegener;
Adl, Sina;
Audic, Stéphane;
Bass, David;
Caron, David A.;
Cochrane, Guy;
Czech, Lucas;
Dunthorn, Micah;
Geisen, Stefan;
Glöckner, Frank Oliver;
Mahé, Frédéric;
Quast, Christian;
Kaye, Jonathan Z.

Publication type:

Article

The Tara Oceans voyage reveals global diversity and distribution patterns of marine planktonic ciliates.

Published in:

Scientific Reports, 2016, p. 33555, doi. 10.1038/srep33555

By:

Gimmler, Anna;
Korn, Ralf;
de Vargas, Colomban;
Audic, Stéphane;
Stoeck, Thorsten

Publication type:

Article

Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes.

Published in:

Environmental Microbiology Reports, 2015, v. 7, n. 6, p. 979, doi. 10.1111/1758-2229.12345

By:

Clerissi, Camille;
Desdevises, Yves;
Romac, Sarah;
Audic, Stéphane;
de Vargas, Colomban;
Acinas, Silvia G.;
Casotti, Raffaella;
Poulain, Julie;
Wincker, Patrick;
Hingamp, Pascal;
Hiroyuki Ogata;
Grimsley, Nigel

Publication type:

Article

Brucella microti: the genome sequence of an emerging pathogen.

Published in:

BMC Genomics, 2009, v. 10, p. 352, doi. 10.1186/1471-2164-10-352

By:

Audic, Stéphane;
Lescot, Magali;
Claverie, Jean-Michel;
Scholz, Holger C.

Publication type:

Article

Analysis of the Rickettsia africae genome reveals that virulence acquisition in Rickettsia species may be explained by genome reduction.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-166

By:

Fournier, Pierre-Edouard;
El Karkouri, Khalid;
Leroy, Quentin;
Robert, Catherine;
Giumelli, Bernadette;
Renesto, Patricia;
Socolovschi, Cristina;
Parola, Philippe;
Audic, Stéphane;
Raoult, Didier

Publication type:

Article