Works by Attwood, Teresa K.

Results: 40

BioCIDER: a Contextualisation InDEx for biological Resources discovery.

Published in:

Bioinformatics, 2017, v. 33, n. 16, p. 2607, doi. 10.1093/bioinformatics/btx213

By:

Horro, Carlos;
Cook, Martin;
Attwood, Teresa K.;
Brazas, Michelle D.;
Hancock, John M.;
Palagi, Patricia;
Corpas, Manuel;
Jimenez, Rafael

Publication type:

Article

The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 140, doi. 10.1093/bioinformatics/btu601

By:

Corpas, Manuel;
Jimenez, Rafael C.;
Bongcam-Rudloff, Erik;
Budd, Aidan;
Brazas, Michelle D.;
Fernandes, Pedro L.;
Gaeta, Bruno;
van Gelder, Celia;
Korpelainen, Eija;
Lewitter, Fran;
McGrath, Annette;
MacLean, Daniel;
Palagi, Patricia M.;
Rother, Kristian;
Taylor, Jan;
Via, Allegra;
Watson, Mick;
Schneider, Maria Victoria;
Attwood, Teresa K.

Publication type:

Article

Learning to extract relations for protein annotation.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i256, doi. 10.1093/bioinformatics/btm168

By:

Jee-Hyub Kim;
Alex Mitchell;
Teresa K. Attwood;
Melanie Hilario

Publication type:

Article

BioIE: extracting informative sentences from the biomedical literature.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2138, doi. 10.1093/bioinformatics/bti296

By:

Anna Divoli;
Teresa K. Attwood

Publication type:

Article

Ten Simple Rules for avoiding and resolving conflicts with your colleagues.

Published in:

2019

By:

Lewitter, Fran;
Bourne, Philip E.;
Attwood, Teresa K.

Publication type:

Editorial

Reuniting data and narrative in scientific articles.

Published in:

Insights: the UKSG journal, 2012, v. 25, n. 3, p. 288, doi. 10.1629/2048-7754.25.3.288

By:

Pettifer, Steve;
Velterop, Jan;
Attwood, Teresa K;
Harland, Lee;
Marsh, James;
Thorne, David;
Tunbridge, Alec

Publication type:

Article

Low complexity regions within protein sequences have position-dependent roles.

Published in:

BMC Systems Biology, 2010, v. 4, p. 43, doi. 10.1186/1752-0509-4-43

By:

Coletta, Alain;
Pinney, John W.;
Solís, David Y. Weiss;
Marsh, James;
Pettifer, Steve R.;
Attwood, Teresa K.

Publication type:

Article

Functional assignment of MAPK phosphatase domains.

Published in:

Proteins, 2007, v. 69, n. 1, p. 19, doi. 10.1002/prot.21477

By:

Nordle, Anna K.L.;
Rios, Pablo;
Gaulton, Anna;
Pulido, Rafael;
Attwood, Teresa K.;
Tabernero, Lydia

Publication type:

Article

Bioschemas training profiles: A set of specifications for standardizing training information to facilitate the discovery of training programs and resources.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011120

By:

Castro, Leyla Jael;
Palagi, Patricia M.;
Beard, Niall;
Attwood, Teresa K.;
Brazas, Michelle D.

Publication type:

Article

A global perspective on evolving bioinformatics and data science training needs.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 2, p. 398, doi. 10.1093/bib/bbx100

By:

Attwood, Teresa K;
Blackford, Sarah;
Brazas, Michelle D;
Davies, Angela;
Schneider, Maria Victoria

Publication type:

Article

A new pan-European Train-the-Trainer programme for bioinformatics: pilot results on feasibility, utility and sustainability of learning.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 2, p. 405, doi. 10.1093/bib/bbx112

By:

Via, Allegra;
Attwood, Teresa K;
Fernandes, Pedro L;
Morgan, Sarah L;
Schneider, Maria Victoria;
Palagi, Patricia M;
Rustici, Gabriella;
Tractenberg, Rochelle E

Publication type:

Article

Best practices in bioinformatics training for life scientists.

Published in:

Briefings in Bioinformatics, 2013, v. 14, n. 5, p. 528, doi. 10.1093/bib/bbt043

By:

Via, Allegra;
Blicher, Thomas;
Bongcam-Rudloff, Erik;
Brazas, Michelle D.;
Brooksbank, Cath;
Budd, Aidan;
De Las Rivas, Javier;
Dreyer, Jacqueline;
Fernandes, Pedro L.;
van Gelder, Celia;
Jacob, Joachim;
Jimenez, Rafael C.;
Loveland, Jane;
Moran, Federico;
Mulder, Nicola;
Nyrönen, Tommi;
Rother, Kristian;
Schneider, Maria Victoria;
Attwood, Teresa K.

Publication type:

Article

The PRINTS database: a fine-grained protein sequence annotation and analysis resource—its status in 2012.

Published in:

Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas019

By:

Attwood, Teresa K.;
Coletta, Alain;
Muirhead, Gareth;
Pavlopoulou, Athanasia;
Philippou, Peter B.;
Popov, Ivan;
Romá-Mateo, Carlos;
Theodosiou, Athina;
Mitchell, Alex L.

Publication type:

Article

Biocurators and Biocuration: surveying the 21st century challenges.

Published in:

Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bar059

By:

Burge, Sarah;
Attwood, Teresa K.;
Bateman, Alex;
Berardini, Tanya Z.;
Cherry, Michael;
O'Donovan, Claire;
Xenarios, loannis;
Gaudet, Pascale

Publication type:

Article

Towards BioDBcore: a community-defined information specification for biological databases.

Published in:

Database: The Journal of Biological Databases & Curation, 2011, v. 2011, n. 0, p. 1

By:

Gaudet, Pascale;
Bairoch, Amos;
Field, Dawn;
Sansone, Susanna-Assunta;
Taylor, Chris;
Attwood, Teresa K.;
Bateman, Alex;
Blake, Judith A.;
Bult, Carol J.;
Cherry, J. Michael;
Chisholm, Rex L.;
Cochrane, Guy;
Cook, Charles E.;
Eppig, Janan T.;
Galperin, Michael Y.;
Gentleman, Robert;
Goble, Carole A.;
Gojobori, Takashi;
Hancock, John M.;
Howe, Douglas G.

Publication type:

Article

Correction: GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training.

Published in:

2015

By:

Attwood, Teresa K.;
Bongcam-Rudloff, Erik;
Brazas, Michelle E.;
Corpas, Manuel;
Gaudet, Pascale;
Lewitter, Fran;
Mulder, Nicola;
Palagi, Patricia M.;
Schneider, Maria Victoria;
van Gelder, Celia W. G.;
null, null

Publication type:

Correction Notice

Ten Simple Rules for Developing a Short Bioinformatics Training Course.

Published in:

2011

By:

Via, Allegra;
Las Rivas, Javier De;
Attwood, Teresa K.;
Landsman, David;
Brazas, Michelle D.;
Leunissen, Jack A. M.;
Tramontano, Anna;
Schneider, Maria Victoria

Publication type:

Editorial

Implementation of proteomic biomarkers: making it work.

Published in:

European Journal of Clinical Investigation, 2012, v. 42, n. 9, p. 1027, doi. 10.1111/j.1365-2362.2012.02674.x

By:

Mischak, Harald;
Ioannidis, John P.A.;
Argiles, Angel;
Attwood, Teresa K.;
Bongcam-Rudloff, Erik;
Broenstrup, Mark;
Charonis, Aristidis;
Chrousos, George P;
Delles, Christian;
Dominiczak, Anna;
Dylag, Tomasz;
Ehrich, Jochen;
Egido, Jesus;
Findeisen, Peter;
Jankowski, Joachim;
Johnson, Robert W.;
Julien, Bruce A.;
Lankisch, Tim;
Leung, Hing Y.;
Maahs, David

Publication type:

Article

Biochemical and biophysical characterization of four EphB kinase domains reveals contrasting thermodynamic, kinetic and inhibition profiles.

Published in:

Bioscience Reports, 2013, v. 33, n. 3, p. 427, doi. 10.1042/BSR20130028

By:

OVERMAN, Ross C.;
DEBRECZENI, Judit E.;
TRUMAN, Caroline M.;
MCALISTER, Mark S.;
ATTWOOD, Teresa K.

Publication type:

Article

InterPro in 2019: improving coverage, classification and access to protein sequence annotations.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D351, doi. 10.1093/nar/gky1100

By:

Mitchell, Alex L;
Attwood, Teresa K;
Babbitt, Patricia C;
Blum, Matthias;
Bork, Peer;
Bridge, Alan;
Brown, Shoshana D;
Chang, Hsin-Yu;
El-Gebali, Sara;
Fraser, Matthew I;
Gough, Julian;
Haft, David R;
Huang, Hongzhan;
Letunic, Ivica;
Lopez, Rodrigo;
Luciani, Aurélien;
Madeira, Fabio;
Marchler-Bauer, Aron;
Mi, Huaiyu;
Natale, Darren A

Publication type:

Article

Opinion: Bioinformatics goes back to the future.

Published in:

Nature Reviews Molecular Cell Biology, 2003, v. 4, n. 2, p. 157, doi. 10.1038/nrm1013

By:

Miller, Crispin J.;
Attwood, Teresa K.

Publication type:

Article

InterPro, progress and status in 2005.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d201

By:

Mulder, Nicola J.;
Apweiler, Rolf;
Attwood, Teresa K.;
Bairoch, Amos;
Bateman, Alex;
Binns, David;
Bradley, Paul;
Bork, Peer;
Bucher, Phillip;
Cerutti, Lorenzo;
Copley, Richard;
Courcelle, Emmanuel;
Das, Ujjwal;
Durbin, Richard;
Fleischmann, Wolfgang;
Gough, Julian;
Haft, Daniel;
Harte, Nicola;
Hulo, Nicolas;
Kahn, Daniel

Publication type:

Article

FAN: fingerprint analysis of nucleotide sequences.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w620, doi. 10.1093/nar/gkh457

By:

Maudling, Neil;
Attwood, Teresa K.

Publication type:

Article

Motif3D: relating protein sequence motifs to 3D structure.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3333, doi. 10.1093/nar/gkg534

By:

Gaulton, Anna;
Attwood, Teresa K.

Publication type:

Article

BPROMPT: a consensus server for membrane protein prediction.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3698, doi. 10.1093/nar/gkg554

By:

Taylor, Paul D.;
Attwood, Teresa K.;
Flower, Darren R.

Publication type:

Article

The InterPro Database, 2003 brings increased coverage and new features.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 1, p. 315, doi. 10.1093/nar/gkg046

By:

Mulder, Nicola J.;
Apweiler, Rolf;
Attwood, Teresa K.;
Bairoch, Amos;
Barrell, Daniel;
Bateman, Alex;
Binns, David;
Biswas, Margaret;
Bradley, Paul;
Bork, Peer;
Bucher, Phillip;
Copley, Richard R.;
Courcelle, Emmanuel;
Das, Ujjwal;
Durbin, Richard;
Falquet, Laurent;
Fleischmann, Wolfgang;
Griffiths-Jones, Sam;
Haft, Daniel;
Harte, Nicola

Publication type:

Article

The Mastery Rubric for Bioinformatics: A tool to support design and evaluation of career-spanning education and training.

Published in:

PLoS ONE, 2019, v. 14, n. 11, p. 1, doi. 10.1371/journal.pone.0225256

By:

Tractenberg, Rochelle E.;
Lindvall, Jessica M.;
Attwood, Teresa K.;
Via, Allegra

Publication type:

Article

Visualising biological data: a semantic approach to tool and database integration.

Published in:

BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S6-S19

By:

Pettifer, Steve;
Thorne, David;
McDermott, Philip;
Marsh, James;
Villéger, Alice;
Kell, Douglas B.;
Attwood, Teresa K.

Publication type:

Article

Ten simple rules for making training materials FAIR.

Published in:

2020

By:

Garcia, Leyla;
Batut, Bérénice;
Burke, Melissa L.;
Kuzak, Mateusz;
Psomopoulos, Fotis;
Arcila, Ricardo;
Attwood, Teresa K.;
Beard, Niall;
Carvalho-Silva, Denise;
Dimopoulos, Alexandros C.;
del Angel, Victoria Dominguez;
Dumontier, Michel;
Gurwitz, Kim T.;
Krause, Roland;
McQuilton, Peter;
Le Pera, Loredana;
Morgan, Sarah L.;
Rauste, Päivi;
Via, Allegra;
Kahlem, Pascal

Publication type:

Editorial

TeSS: a platform for discovering life-science training opportunities.

Published in:

Bioinformatics, 2020, v. 36, n. 10, p. 3290, doi. 10.1093/bioinformatics/btaa047

By:

Beard, Niall;
Bacall, Finn;
Nenadic, Aleksandra;
Thurston, Milo;
Goble, Carole A;
Sansone, Susanna-Assunta;
Attwood, Teresa K

Publication type:

Article

Completing the structural family portrait of the human EphB tyrosine kinase domains.

Published in:

Protein Science: A Publication of the Protein Society, 2014, v. 23, n. 5, p. 627, doi. 10.1002/pro.2445

By:

Overman, Ross C.;
Debreczeni, Judit E.;
Truman, Caroline M.;
McAlister, Mark S.;
Attwood, Teresa K.

Publication type:

Article

InterPro in 2017--beyond protein family and domain annotations.

Published in:

Nucleic Acids Research, 2017, v. 45, n. D1, p. D190, doi. 10.1093/nar/gkw1107

By:

Finn, Robert D.;
Attwood, Teresa K.;
Babbitt, Patricia C.;
Bateman, Alex;
Bork, Peer;
Bridge, Alan J.;
Hsin-Yu Chang;
Dosztányi, Zsuzsanna;
El-Gebali, Sara;
Fraser, Matthew;
Gough, Julian;
Haft, David;
Holliday, Gemma L.;
Hongzhan Huang;
Xiaosong Huang;
Letunic, Ivica;
Lopez, Rodrigo;
Lu, Shennan;
Marchler-Bauer, Aron;
Huaiyu Mi

Publication type:

Article

The InterPro protein families database: the classification resource after 15 years.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D213, doi. 10.1093/nar/gku1243

By:

Mitchell, Alex;
Chang, Hsin-Yu;
Daugherty, Louise;
Fraser, Matthew;
Hunter, Sarah;
Lopez, Rodrigo;
McAnulla, Craig;
McMenamin, Conor;
Nuka, Gift;
Pesseat, Sebastien;
Sangrador-Vegas, Amaia;
Scheremetjew, Maxim;
Rato, Claudia;
Yong, Siew-Yit;
Bateman, Alex;
Punta, Marco;
Attwood, Teresa K.;
Sigrist, Christian J.A.;
Redaschi, Nicole;
Rivoire, Catherine

Publication type:

Article

InterPro in 2011: new developments in the family and domain prediction database.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4725, doi. 10.1093/nar/gks456

By:

Hunter, Sarah;
Jones, Philip;
Mitchell, Alex;
Apweiler, Rolf;
Attwood, Teresa K.;
Bateman, Alex;
Bernard, Thomas;
Binns, David;
Bork, Peer;
Burge, Sarah;
de Castro, Edouard;
Coggill, Penny;
Corbett, Matthew;
Das, Ujjwal;
Daugherty, Louise;
Duquenne, Lauranne;
Finn, Robert D.;
Fraser, Matthew;
Gough, Julian;
Haft, Daniel

Publication type:

Article

InterPro in 2011: new developments in the family and domain prediction database.

Published in:

Nucleic Acids Research, 2012, p. D306, doi. 10.1093/nar/gkr948

By:

Hunter, Sarah;
Jones, Philip;
Mitchell, Alex;
Apweiler, Rolf;
Attwood, Teresa K.;
Bateman, Alex;
Bernard, Thomas;
Binns, David;
Bork, Peer;
Burge, Sarah;
de Castro, Edouard;
Coggill, Penny;
Corbett, Matthew;
Das, Ujjwal;
Daugherty, Louise;
Duquenne, Lauranne;
Finn, Robert D.;
Fraser, Matthew;
Gough, Julian;
Haft, Daniel

Publication type:

Article

NucleaRDB: information system for nuclear receptors.

Published in:

Nucleic Acids Research, 2012, p. D377, doi. 10.1093/nar/gkr960

By:

Vroling, Bas;
Thorne, David;
McDermott, Philip;
Joosten, Henk-Jan;
Attwood, Teresa K.;
Pettifer, Steve;
Vriend, Gert

Publication type:

Article

Towards BioDBcore: a community-defined information specification for biological databases.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D7, doi. 10.1093/nar/gkq1173

By:

Gaudet, Pascale;
Bairoch, Amos;
Field, Dawn;
Sansone, Susanna-Assunta;
Taylor, Chris;
Attwood, Teresa K.;
Bateman, Alex;
Blake, Judith A.;
Bult, Carol J.;
Cherry, J. Michael;
Chisholm, Rex L.;
Cochrane, Guy;
Cook, Charles E.;
Eppig, Janan T.;
Galperin, Michael Y.;
Gentleman, Robert;
Goble, Carole A.;
Gojobori, Takashi;
Hancock, John M.;
Howe, Douglas G.

Publication type:

Article

Aspergillus Genomes and the Aspergillus Cloud.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D509, doi. 10.1093/nar/gkn876

By:

Mabey Gilsenan, Jane E.;
Atherton, Graham;
Bartholomew, Jennifer;
Giles, Peter F.;
Attwood, Teresa K.;
Denning, David W.;
Bowyer, Paul

Publication type:

Article

InterPro: the integrative protein signature database.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D211, doi. 10.1093/nar/gkn785

By:

Hunter, Sarah;
Apweiler, Rolf;
Attwood, Teresa K.;
Bairoch, Amos;
Bateman, Alex;
Binns, David;
Bork, Peer;
Das, Ujjwal;
Daugherty, Louise;
Duquenne, Lauranne;
Finn, Robert D.;
Gough, Julian;
Haft, Daniel;
Hulo, Nicolas;
Kahn, Daniel;
Kelly, Elizabeth;
Laugraud, Aurélie;
Letunic, Ivica;
Lonsdale, David;
Lopez, Rodrigo

Publication type:

Article

New developments in the InterPro database.

Published in:

Nucleic Acids Research, 2007, v. 35, p. d224, doi. 10.1093/nar/gkl841

By:

Mulder, Nicola J.;
Apweiler, Rolf;
Attwood, Teresa K.;
Bairoch, Amos;
Bateman, Alex;
Binns, David;
Bork, Peer;
Buillard, Virginie;
Cerutti, Lorenzo;
Copley, Richard;
Courcelle, Emmanuel;
Das, Ujjwal;
Daugherty, Louise;
Dibley, Mark;
Finn, Robert;
Fleischmann, Wolfgang;
Gough, Julian;
Haft, Daniel;
Hulo, Nicolas;
Hunter, Sarah

Publication type:

Article