Works by Arkin, Adam P.

Results: 153

Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity.
Published in:
Microbiome, 2020, v. 8, n. 1, p. 1, doi. 10.1186/s40168-020-00825-w
By:
- Tian, Renmao;
- Ning, Daliang;
- He, Zhili;
- Zhang, Ping;
- Spencer, Sarah J.;
- Gao, Shuhong;
- Shi, Weiling;
- Wu, Linwei;
- Zhang, Ya;
- Yang, Yunfeng;
- Adams, Benjamin G.;
- Rocha, Andrea M.;
- Detienne, Brittny L.;
- Lowe, Kenneth A.;
- Joyner, Dominique C.;
- Klingeman, Dawn M.;
- Arkin, Adam P.;
- Fields, Matthew W.;
- Hazen, Terry C.;
- Stahl, David A.
Publication type:
Article
Regulation of transcription by unnatural amino acids.
Published in:
Nature Biotechnology, 2011, v. 29, n. 2, p. 164, doi. 10.1038/nbt.1741
By:
- Liu, Chang C.;
- Lei Qi;
- Yanofsky, Charles;
- Arkin, Adam P.
Publication type:
Article
Deviant effects in molecular reaction pathways.
Published in:
Nature Biotechnology, 2006, v. 24, n. 10, p. 1235, doi. 10.1038/nbt1253
By:
- Samoilov, Michael S;
- Arkin, Adam P
Publication type:
Article
Precise and reliable gene expression via standard transcription and translation initiation elements.
Published in:
Nature Methods, 2013, v. 10, n. 4, p. 354, doi. 10.1038/nmeth.2404
By:
- Mutalik, Vivek K;
- Guimaraes, Joao C;
- Cambray, Guillaume;
- Lam, Colin;
- Christoffersen, Marc Juul;
- Mai, Quynh-Anh;
- Tran, Andrew B;
- Paull, Morgan;
- Keasling, Jay D;
- Arkin, Adam P;
- Endy, Drew
Publication type:
Article
Quantitative estimation of activity and quality for collections of functional genetic elements.
Published in:
Nature Methods, 2013, v. 10, n. 4, p. 347, doi. 10.1038/nmeth.2403
By:
- Mutalik, Vivek K;
- Guimaraes, Joao C;
- Cambray, Guillaume;
- Mai, Quynh-Anh;
- Christoffersen, Marc Juul;
- Martin, Lance;
- Yu, Ayumi;
- Lam, Colin;
- Rodriguez, Cesar;
- Bennett, Gaymon;
- Keasling, Jay D;
- Endy, Drew;
- Arkin, Adam P
Publication type:
Article
An adaptor from translational to transcriptional control enables predictable assembly of complex regulation.
Published in:
Nature Methods, 2012, v. 9, n. 11, p. 1088, doi. 10.1038/nmeth.2184
By:
- Liu, Chang C;
- Qi, Lei;
- Lucks, Julius B;
- Segall-Shapiro, Thomas H;
- Wang, Denise;
- Mutalik, Vivek K;
- Arkin, Adam P
Publication type:
Article
Correction: Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics.
Published in:
2019
By:
- Price, Morgan N.;
- Zane, Grant M.;
- Kuehl, Jennifer V.;
- Melnyk, Ryan A.;
- Wall, Judy D.;
- Deutschbauer, Adam M.;
- Arkin, Adam P.
Publication type:
Correction Notice
A tightly regulated inducible expression system utilizing the fim inversion recombination switch.
Published in:
Biotechnology & Bioengineering, 2006, v. 94, n. 1, p. 1, doi. 10.1002/bit.20916
By:
- Ham, Timothy S.;
- Lee, Sung Kuk;
- Keasling, Jay D.;
- Arkin, Adam P.
Publication type:
Article
Nitrogen accountancy in space agriculture.
Published in:
NPJ Microgravity, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41526-024-00428-x
By:
- Yates, Kevin;
- Berliner, Aaron J.;
- Makrygiorgos, Georgios;
- Kaiyom, Farrah;
- McNulty, Matthew J.;
- Khan, Imran;
- Kusuma, Paul;
- Kinlaw, Claire;
- Miron, Diogo;
- Legg, Charles;
- Wilson, James;
- Bugbee, Bruce;
- Mesbah, Ali;
- Arkin, Adam P.;
- Nandi, Somen;
- McDonald, Karen A.
Publication type:
Article
A Defined Medium for Cultivation and Exometabolite Profiling of Soil Bacteria.
Published in:
Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.855331
By:
- de Raad, Markus;
- Li, Yifan V.;
- Kuehl, Jennifer V.;
- Andeer, Peter F.;
- Kosina, Suzanne M.;
- Hendrickson, Andrew;
- Saichek, Nicholas R.;
- Golini, Amber N.;
- Han, La Zhen;
- Wang, Ying;
- Bowen, Benjamin P.;
- Deutschbauer, Adam M.;
- Arkin, Adam P.;
- Chakraborty, Romy;
- Northen, Trent R.
Publication type:
Article
Biofilm Interaction Mapping and Analysis (BIMA) of Interspecific Interactions in Pseudomonas Co-culture Biofilms.
Published in:
Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.757856
By:
- Kosina, Suzanne M.;
- Rademacher, Peter;
- Wetmore, Kelly M.;
- de Raad, Markus;
- Zemla, Marcin;
- Zane, Grant M.;
- Zulovich, Jennifer J.;
- Chakraborty, Romy;
- Bowen, Benjamin P.;
- Wall, Judy D.;
- Auer, Manfred;
- Arkin, Adam P.;
- Deutschbauer, Adam M.;
- Northen, Trent R.
Publication type:
Article
Evaluating the Cost of Pharmaceutical Purification for a Long-Duration Space Exploration Medical Foundry.
Published in:
Frontiers in Microbiology, 2021, p. 1, doi. 10.3389/fmicb.2021.700863
By:
- McNulty, Matthew J.;
- Berliner, Aaron J.;
- Negulescu, Patrick G.;
- McKee, Liber;
- Hart, Olivia;
- Yates, Kevin;
- Arkin, Adam P.;
- Nandi, Somen;
- McDonald, Karen A.
Publication type:
Article
Production of PHB From CO<sub>2</sub>-Derived Acetate With Minimal Processing Assessed for Space Biomanufacturing.
Published in:
Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.700010
By:
- Cestellos-Blanco, Stefano;
- Friedline, Skyler;
- Sander, Kyle B.;
- Abel, Anthony J.;
- Kim, Ji Min;
- Clark, Douglas S.;
- Arkin, Adam P.;
- Yang, Peidong
Publication type:
Article
Chromosome assembled and annotated genome sequence of Aspergillus flavus NRRL 3357.
Published in:
G3: Genes | Genomes | Genetics, 2021, v. 11, n. 8, p. 1, doi. 10.1093/g3journal/jkab213
By:
- Skerker, Jeffrey M.;
- Pianalto, Kaila M.;
- Mondo, Stephen J.;
- Yang, Kunlong;
- Arkin, Adam P.;
- Keller, Nancy P.;
- Grigoriev, Igor V.;
- Glass, N. Louise Louise
Publication type:
Article
Publisher Correction: Metagenome-assembled genome extraction and analysis from microbiomes using KBase.
Published in:
2023
By:
- Chivian, Dylan;
- Jungbluth, Sean P.;
- Dehal, Paramvir S.;
- Wood-Charlson, Elisha M.;
- Canon, Richard S.;
- Allen, Benjamin H.;
- Clark, Mikayla M.;
- Gu, Tianhao;
- Land, Miriam L.;
- Price, Gavin A.;
- Riehl, William J.;
- Sneddon, Michael W.;
- Sutormin, Roman;
- Zhang, Qizhi;
- Cottingham, Robert W.;
- Henry, Chris S.;
- Arkin, Adam P.
Publication type:
Correction Notice
Metagenome-assembled genome extraction and analysis from microbiomes using KBase.
Published in:
Nature Protocols, 2023, v. 18, n. 1, p. 208, doi. 10.1038/s41596-022-00747-x
By:
- Chivian, Dylan;
- Jungbluth, Sean P.;
- Dehal, Paramvir S.;
- Wood-Charlson, Elisha M.;
- Canon, Richard S.;
- Allen, Benjamin H.;
- Clark, Mikayla M.;
- Gu, Tianhao;
- Land, Miriam L.;
- Price, Gavin A.;
- Riehl, William J.;
- Sneddon, Michael W.;
- Sutormin, Roman;
- Zhang, Qizhi;
- Cottingham, Robert W.;
- Henry, Chris S.;
- Arkin, Adam P.
Publication type:
Article
Control of Stochastic Gene Expression by Host Factors at the HIV Promoter.
Published in:
PLoS Pathogens, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.ppat.1000260
By:
- Burnett, John C.;
- Miller-Jensen, Kathryn;
- Shah, Priya S.;
- Arkin, Adam P.;
- Schaffer, David V.
Publication type:
Article
Genomic and environmental controls on Castellaniella biogeography in an anthropogenically disturbed subsurface.
Published in:
Environmental Microbiome, 2024, v. 19, n. 1, p. 1, doi. 10.1186/s40793-024-00570-9
By:
- Goff, Jennifer L.;
- Szink, Elizabeth G.;
- Durrence, Konnor L.;
- Lui, Lauren M.;
- Nielsen, Torben N.;
- Kuehl, Jennifer V.;
- Hunt, Kristopher A.;
- Chandonia, John-Marc;
- Huang, Jiawen;
- Thorgersen, Michael P.;
- Poole II, Farris L.;
- Stahl, David A.;
- Chakraborty, Romy;
- Deutschbauer, Adam M.;
- Arkin, Adam P.;
- Adams, Michael W. W.
Publication type:
Article
The evolution of genetic regulatory systems in bacteria.
Published in:
Nature Reviews Genetics, 2004, v. 5, n. 3, p. 1, doi. 10.1038/nrg1292
By:
- McAdams, Harley H.;
- Srinivasan, Balaji;
- Arkin, Adam P.
Publication type:
Article
A Theoretical Lower Bound for Selection on the Expression Levels of Proteins.
Published in:
Genome Biology & Evolution, 2016, v. 8, n. 6, p. 1917, doi. 10.1093/gbe/evw126
By:
- Price, Morgan N.;
- Arkin, Adam P.
Publication type:
Article
A fast comparative genome browser for diverse bacteria and archaea.
Published in:
PLoS ONE, 2024, v. 19, n. 4, p. 1, doi. 10.1371/journal.pone.0301871
By:
- Price, Morgan N.;
- Arkin, Adam P.
Publication type:
Article
Impact of elevated nitrate on sulfate-reducing bacteria: a comparative Study of Desulfovibrio vulgaris.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 11, p. 1386, doi. 10.1038/ismej.2010.59
By:
- Qiang He;
- Zhili He;
- Joyner, Dominique C.;
- Joachimiak, Marcin;
- Price, Morgan N.;
- Yang, Zamin K.;
- Huei-Che Bill Yen;
- Hemme, Christopher L.;
- Wenqiong Chen;
- Fields, Matthew W.;
- Stahl, David A.;
- Keasling, Jay D.;
- Keller, Martin;
- Arkin, Adam P.;
- Hazen, Terry C.;
- Wall, Judy D.;
- Jizhong Zhou
Publication type:
Article
RegPrecise 3.0 -- A resource for genome-scale exploration of transcriptional regulation in bacteria.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-745
By:
- Novichkov, Pavel S.;
- Kazakov, Alexey E.;
- Ravcheev, Dmitry A.;
- Leyn, Semen A.;
- Kovaleva, Galina Y.;
- Sutormin, Roman A.;
- Kazanov, Marat D.;
- Riehl, William;
- Arkin, Adam P.;
- Dubchak, Inna;
- Rodionov, Dmitry A.
Publication type:
Article
RegTransBase - a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-213
By:
- Cipriano, Michael J.;
- Novichkov, Pavel N.;
- Kazakov, Alexey E.;
- Rodionov, Dmitry A.;
- Arkin, Adam P.;
- Gelfand, Mikhail S.;
- Dubchak, Inna
Publication type:
Article
Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state.
Published in:
BMC Genomics, 2012, v. 13, n. 1, p. 138, doi. 10.1186/1471-2164-13-138
By:
- Clark, Melinda E.;
- Zhili He;
- Redding, Alyssa M.;
- Joachimiak, Marcin P.;
- Keasling, Jay D.;
- Jizhong Z. Zhou;
- Arkin, Adam P.;
- Mukhopadhyay, Aindrila;
- Fields, Matthew W.
Publication type:
Article
Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.
Published in:
BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-S1-S3
By:
- Rodionov, Dmitry A.;
- Novichkov, Pavel S.;
- Stavrovskaya, Elena D.;
- Rodionova, Irina A.;
- Xiaoqing Li;
- Kazanov, Marat D.;
- Ravcheev, Dmitry A.;
- Gerasimova, Anna V.;
- Kazakov, Alexey E.;
- Yu Kovaleva, Galina;
- Permina, Elizabeth A.;
- Laikova, Olga N.;
- Overbeek, Ross;
- Romine, Margaret F.;
- Fredrickson, James K.;
- Arkin, Adam P.;
- Dubchak, Inna;
- Osterman, Andrei L.;
- Gelfand, Mikhail S.
Publication type:
Article
Filling gaps in bacterial catabolic pathways with computation and high-throughput genetics.
Published in:
PLoS Genetics, 2022, v. 18, n. 4, p. 1, doi. 10.1371/journal.pgen.1010156
By:
- Price, Morgan N.;
- Deutschbauer, Adam M.;
- Arkin, Adam P.
Publication type:
Article
Programming mRNA decay to modulate synthetic circuit resource allocation.
Published in:
Nature Communications, 2017, v. 8, n. 4, p. 15128, doi. 10.1038/ncomms15128
By:
- Venturelli, Ophelia S.;
- Tei, Mika;
- Bauer, Stefan;
- Chan, Leanne Jade G.;
- Petzold, Christopher J.;
- Arkin, Adam P
Publication type:
Article
Chromatin accessibility at the HIV LTR promoter sets a threshold for NF-κB mediated viral gene expression.
Published in:
Integrative Biology, 2012, v. 4, n. 6, p. 661, doi. 10.1039/c2ib20009k
By:
- Miller-Jensen, Kathryn;
- Dey, Siddharth S.;
- Pham, Nhung;
- Foley, Jonathan E.;
- Arkin, Adam P.;
- Schaffer, David V.
Publication type:
Article
Rhodosporidium toruloides: a new platform organism for conversion of lignocellulose into terpene biofuels and bioproducts.
Published in:
Biotechnology for Biofuels, 2017, v. 10, p. 1, doi. 10.1186/s13068-017-0927-5
By:
- Junko Yaegashi;
- Kirby, James;
- Masakazu Ito;
- Jian Sun;
- Dutta, Tanmoy;
- Mirsiaghi, Mona;
- Sundstrom, Eric R.;
- Rodriguez, Alberto;
- Baidoo, Edward;
- Tanjore, Deepti;
- Pray, Todd;
- Sale, Kenneth;
- Singh, Seema;
- Keasling, Jay D.;
- Simmons, Blake A.;
- Singer, Steven W.;
- Magnuson, Jon K.;
- Arkin, Adam P.;
- Skerker, Jeffrey M.;
- Gladden, John M.
Publication type:
Article
Genetic Selection for Context-Dependent Stochastic Phenotypes: Sp1 and TATA Mutations Increase Phenotypic Noise in HIV-1 Gene Expression.
Published in:
PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003135
By:
- Miller-Jensen, Kathryn;
- Skupsky, Ron;
- Shah, Priya S.;
- Arkin, Adam P.;
- Schaffer, David V.
Publication type:
Article
Metallochaperones Regulate Intracellular Copper Levels.
Published in:
PLoS Computational Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002880
By:
- Lee Pang, W.;
- Kaur, Amardeep;
- Ratushny, Alexander V.;
- Cvetkovic, Aleksandar;
- Kumar, Sunil;
- Min Pan;
- Arkin, Adam P.;
- Aitchison, John D.;
- Adams, Michael W. W.;
- Baliga, Nitin S.
Publication type:
Article
HIV Promoter Integration Site Primarily Modulates Transcriptional Burst Size Rather Than Frequency.
Published in:
PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000952
By:
- Skupsky, Ron;
- Burnett, John C.;
- Foley, Jonathan E.;
- Schaffer, David V.;
- Arkin, Adam P.
Publication type:
Article
Computational Models of HIV-1 Resistance to Gene Therapy Elucidate Therapy Design Principles.
Published in:
PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000883
By:
- Aviran, Sharon;
- Shah, Priya S.;
- Schaffer, David V.;
- Arkin, Adam P.
Publication type:
Article
Detailed Simulations of Cell Biology with Smoldyn 2.1.
Published in:
PLoS Computational Biology, 2010, v. 6, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000705
By:
- Andrews, Steven S.;
- Addy, Nathan J.;
- Brent, Roger;
- Arkin, Adam P.
Publication type:
Article
A Dual Receptor Crosstalk Model of G-Protein-Coupled Signal Transduction.
Published in:
PLoS Computational Biology, 2008, v. 4, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000185
By:
- Flaherty, Patrick;
- Radhakrishnan, Mala L.;
- Tuan Dinh;
- Rebres, Robert A.;
- Roach, Tamara I.;
- Jordan, Michael I.;
- Arkin, Adam P.
Publication type:
Article
Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes.
Published in:
PLoS Computational Biology, 2007, v. 3, n. 9, p. 1739, doi. 10.1371/journal.pcbi.0030175
By:
- Price, Morgan N.;
- Dehal, Paramvir S.;
- Arkin, Adam P.
Publication type:
Article
Dissimilatory Metabolism of Nitrogen Oxides in Bacteria: Comparative Reconstruction of Transcriptional Networks.
Published in:
PLoS Computational Biology, 2005, v. 1, n. 5, p. 415, doi. 10.1371/journal.pcbi.0010055
By:
- Rodionov, Dmitry A.;
- Dubchak, Inna L.;
- Arkin, Adam P.;
- Alm, Eric J.;
- Gelfand, Mikhail S.;
- Miyano, Satoru
Publication type:
Article
Design and Diversity in Bacterial Chemotaxis: A Comparative Study in Escherichia coli and Bacillus subtilis.
Published in:
PLoS Biology, 2004, v. 2, n. 2, p. 1, doi. 10.1371/journal.pbio.0020049
By:
- Rao, Christopher V;
- Kirby, John R;
- Arkin, Adam P
Publication type:
Article
Design and Diversity in Bacterial Chemotaxis: A Comparative Study in Escherichia coli and Bacillus subtilis.
Published in:
PLoS Biology, 2004, v. 2, n. 2, p. 0239, doi. 10.1371/journal.pbio.0020049
By:
- Rao, Christopher V.;
- Kirby, John R.;
- Arkin, Adam P.
Publication type:
Article
Comparative metagenomics reveals impact of contaminants on groundwater microbiomes.
Published in:
Frontiers in Microbiology, 2015, v. 6, p. 1, doi. 10.3389/fmicb.2015.01205
By:
- Hemme, Christopher L.;
- Qichao Tu;
- Zhou Shi;
- Yujia Qin;
- Weimin Gao;
- Ye Deng;
- Van Nostrand, Joy D.;
- Liyou Wu;
- Zhili He;
- Chain, Patrick S. G.;
- Tringe, Susannah G.;
- Fields, Matthew W.;
- Rubin, Edward M.;
- Tiedje, James M.;
- Hazen, Terry C.;
- Arkin, Adam P.;
- Jizhong Zhou;
- Van Der Meer, Jan Roelof;
- Prithiviraj, Bharath;
- Drewniak, Lukasz
Publication type:
Article
The genetic basis of energy conservation in the sulfate-reducing bacterium Desulfovibrio alaskensis G20.
Published in:
Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00577
By:
- Price, Morgan N.;
- Ray, Jayashree;
- Wetmore, Kelly M.;
- Kuehl, Jennifer V.;
- Bauer, Stefan;
- Deutschbauer, Adam M.;
- Arkin, Adam P.
Publication type:
Article
Dual-barcoded shotgun expression library sequencing for high-throughput characterization of functional traits in bacteria.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-018-08177-8
By:
- Mutalik, Vivek K.;
- Novichkov, Pavel S.;
- Price, Morgan N.;
- Owens, Trenton K.;
- Callaghan, Mark;
- Carim, Sean;
- Deutschbauer, Adam M.;
- Arkin, Adam P.
Publication type:
Article
In-field bioreactors demonstrate dynamic shifts in microbial communities in response to geochemical perturbations.
Published in:
PLoS ONE, 2020, v. 15, n. 9, p. 1, doi. 10.1371/journal.pone.0232437
By:
- Wilpiszeski, Regina L.;
- Gionfriddo, Caitlin M.;
- Wymore, Ann M.;
- Moon, Ji-Won;
- Lowe, Kenneth A.;
- Podar, Mircea;
- Rafie, Sa'ad;
- Fields, Matthew W.;
- Hazen, Terry C.;
- Ge, Xiaoxuan;
- Poole, Farris;
- Adams, Michael W. W.;
- Chakraborty, Romy;
- Fan, Yupeng;
- Van Nostrand, Joy D.;
- Zhou, Jizhong;
- Arkin, Adam P.;
- Elias, Dwayne A.
Publication type:
Article
BglBricks: A flexible standard for biological part assembly.
Published in:
Journal of Biological Engineering, 2010, v. 4, p. 1, doi. 10.1186/1754-1611-4-1
By:
- Anderson, J. Christopher;
- Dueber, John E.;
- Leguia, Mariana;
- Wu, Gabriel C.;
- Goler, Jonathan A.;
- Arkin, Adam P.;
- Keasling, Jay D.
Publication type:
Article
Snapshot of iron response in Shewanella oneidensis by gene network reconstruction.
Published in:
BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-131
By:
- Yunfeng Yang;
- Harris, Daniel P.;
- Feng Luo;
- Wenlu Xiong;
- Joachimiak, Marcin;
- Liyou Wu;
- Dehal, Paramvir;
- Jacobsen, Janet;
- Zamin Yang;
- Palumbo, Anthony V.;
- Arkin, Adam P.;
- Jizhong Zhou
Publication type:
Article
Novel insights into iron metabolism by integrating deletome and transcriptome analysis in an iron deficiency model of the yeast Saccharomyces cerevisiae.
Published in:
BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-130
By:
- Jo, William J.;
- Jeung Hyoun Kim;
- Oh, Eric;
- Jaramillo, Daniel;
- Holman, Patricia;
- Loguinov, Alex V.;
- Arkin, Adam P.;
- Nislow, Corey;
- Giaever, Guri;
- Vulpe, Chris D.
Publication type:
Article
The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism.
Published in:
BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1615-y
By:
- Birkel, Garrett W.;
- Ghosh, Amit;
- Kumar, Vinay S.;
- Weaver, Daniel;
- Ando, David;
- Backman, Tyler W. H.;
- Arkin, Adam P.;
- Keasling, Jay D.;
- Martín, Héctor García
Publication type:
Article
Evidence-Based Annotation of Gene Function in Shewanella oneidensis MR-1 Using Genome-Wide Fitness Profiling across 121 Conditions.
Published in:
PLoS Genetics, 2011, v. 7, n. 11, p. 1, doi. 10.1371/journal.pgen.1002385
By:
- Deutschbauer, Adam;
- Price, Morgan N.;
- Wetmore, Kelly M.;
- Wenjun Shao;
- Baumohl, Jason K.;
- Zhuchen Xu;
- Nguyen, Michelle;
- Tamse, Raquel;
- Davis, Ronald W.;
- Arkin, Adam P.
Publication type:
Article
Correction: The Life-Cycle of Operons.
Published in:
2006
By:
- Price, Morgan N.;
- Arkin, Adam P.;
- Alm, Eric J.
Publication type:
Correction Notice