Works matching AU Aravind, L.

Results: 161

Leveraging pigeon-inspired optimizer with deep learning model on website phishing detection and classification for secure web mining.

Published in:

International Journal of Innovative Research & Scientific Studies, 2025, v. 8, n. 2, p. 3703, doi. 10.53894/ijirss.v8i2.6100

By:

Jaiganesh, S.;
Aravind Babu, L. R.

Publication type:

Article

Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 7, p. 725, doi. 10.1038/nsmb.1619

By:

Velikovsky, C. Alejandro;
Lu Deng;
Tasumi, Satoshi;
Iyer, Lakshminarayan M.;
Kerzic, Melissa C.;
Aravind, L.;
Pancer, Zeev;
Mariuzza, Roy A.

Publication type:

Article

Bacterial GRAS domain proteins throw new light on gibberellic acid response mechanisms.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2407, doi. 10.1093/bioinformatics/bts464

By:

Zhang, Dapeng;
Iyer, Lakshminarayan M.;
Aravind, L.

Publication type:

Article

UMA and MABP domains throw light on receptor endocytosis and selection of endosomal cargoes.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. 1477, doi. 10.1093/bioinformatics/btq235

By:

De Souza, Robson F.;
Aravind, L.

Publication type:

Article

CYSTM, a novel cysteine-rich transmembrane module with a role in stress tolerance across eukaryotes.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 149, doi. 10.1093/bioinformatics/btp647

By:

Venancio, Thiago M.;
Aravind, L.

Publication type:

Article

AMIN domains have a predicted role in localization of diverse periplasmic protein complexes.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2423, doi. 10.1093/bioinformatics/btn449

By:

Robson Francisco de Souza;
Vivek Anantharaman;
Sandro JosÃ© de Souza;
L. Aravind;
Frederico J. Gueiros-Filho

Publication type:

Article

BEN: a novel domain in chromatin factors and DNA viral proteins.

Published in:

Bioinformatics, 2008, v. 24, n. 4, p. 458, doi. 10.1093/bioinformatics/btn007

By:

Saraswathi Abhiman;
Lakshminarayan M. Iyer;
L. Aravind

Publication type:

Article

The DOMON domains are involved in heme and sugar recognition.

Published in:

Bioinformatics, 2007, v. 23, n. 20, p. 2660, doi. 10.1093/bioinformatics/btm411

By:

Iyer, Lakshminarayan M.;
Anantharaman, Vivek;
Aravind, L.

Publication type:

Article

The ASCH superfamily: novel domains with a fold related to the PUA domain and a potential role in RNA metabolism.

Published in:

Bioinformatics, 2006, v. 22, n. 3, p. 257

By:

L. Aravind

Publication type:

Article

Loss of the Spinocerebellar Ataxia type 3 disease protein ATXN3 alters transcription of multiple signal transduction pathways.

Published in:

PLoS ONE, 2018, v. 13, n. 9, p. 1, doi. 10.1371/journal.pone.0204438

By:

Zeng, Li;
Zhang, Dapeng;
McLoughlin, Hayley S.;
Zalon, Annie J.;
Aravind, L.;
Paulson, Henry L.

Publication type:

Article

TCRβ-expressing macrophages induced by a pathogenic murine malaria correlate with parasite burden and enhanced phagocytic activity.

Published in:

PLoS ONE, 2018, v. 13, n. 7, p. 1, doi. 10.1371/journal.pone.0201043

By:

Oakley, Miranda S.;
Chorazeczewski, Joanna K.;
Aleshnick, Maya;
Anantharaman, Vivek;
Majam, Victoria;
Chawla, Bhavna;
Myers, Timothy G.;
Su, Qin;
Okoth, Winter A.;
Takeda, Kazuyo;
Akue, Adovi;
KuKuruga, Mark;
Aravind, L.;
Kumar, Sanjai

Publication type:

Article

Novel conserved domains in proteins with predicted roles in eukaryotic cell-cycle regulation, decapping and RNA stability.

Published in:

BMC Genomics, 2004, v. 5, p. 45, doi. 10.1186/1471-2164-5-45

By:

Anantharaman, Vivek;
Aravind, L.

Publication type:

Article

Application of comparative genomics in the identification and analysis of novel families of membrane-associated receptors in bacteria.

Published in:

BMC Genomics, 2003, v. 4, p. 34, doi. 10.1186/1471-2164-4-34

By:

Anantharaman, Vivek;
Aravind, L.

Publication type:

Article

The catalytic domains of thiamine triphosphatase and CyaB-like adenylyl cyclase define a novel superfamily of domains that bind organic phosphates.

Published in:

BMC Genomics, 2002, v. 3, p. 33, doi. 10.1186/1471-2164-3-33

By:

Iyer, Lakshminarayan M.;
Aravind, L.

Publication type:

Article

Ancient conserved domains shared by animal soluble guanylyl cyclases and bacterial signaling proteins.

Published in:

BMC Genomics, 2003, v. 4, p. 5, doi. 10.1186/1471-2164-4-5

By:

Iyer, Lakshminarayan M.;
Anantharaman, Vivek;
Aravind, L.

Publication type:

Article

Classification and evolutionary history of the single-strand annealing proteins, RecT, Redβ, ERF and RAD52.

Published in:

BMC Genomics, 2002, v. 3, p. 8, doi. 10.1186/1471-2164-3-8

By:

Iyer, Lakshminarayan M.;
Koonin, Eugene V.;
Aravind, L.

Publication type:

Article

MEDS and PocR are novel domains with a predicted role in sensing simple hydrocarbon derivatives in prokaryotic signal transduction systems.

Published in:

Bioinformatics, 2005, v. 21, n. 12, p. 2805

By:

L. Aravind

Publication type:

Article

IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices.

Published in:

Bioinformatics, 1999, v. 15, n. 12, p. 1000, doi. 10.1093/bioinformatics/15.12.1000

By:

A.Schäffer, Alejandro;
I.Wolf, Yuri;
P.Ponting, Chris;
V.Koonin, Eugene;
Aravind, L.;
F.Altschul, Stephen

Publication type:

Article

Themis is a member of a new metazoan gene family and is required for the completion of thymocyte positive selection.

Published in:

2010

By:

Johnson, Andy L;
Aravind, L;
Shulzhenko, Natalia;
Morgun, Andre;
Choi, See-Young;
Crockford, Tanya L;
Lambe, Teresa;
Domaschenz, Heather;
Kucharska, Edyta M;
Zheng, Lixin;
Vinuesa, Carola G;
Lenardo, Michael J;
Goodnow, Christopher C;
Cornall, Richard J;
Schwartz, Ronald H

Publication type:

Correction Notice

Themis is a member of a new metazoan gene family and is required for the completion of thymocyte positive selection.

Published in:

Nature Immunology, 2009, v. 10, n. 8, p. 831, doi. 10.1038/ni.1769

By:

Johnson, Andy L.;
Aravind, L.;
Shulzhenko, Natalia;
Morgun, Andre;
See-Young Choi;
Crockford, Tanya L.;
Lambe, Teresa;
Domaschenz, Heather;
Kucharska, Edyta M.;
Zheng, Lixin;
Vinuesa, Carola G.;
Lenardo, Michael J.;
Goodnow, Christopher C.;
Cornall, Richard J.;
Schwartz, Ronald H.

Publication type:

Article

Evolution and diversification of lamprey antigen receptors: evidence for involvement of an AID-APOBEC family cytosine deaminase.

Published in:

Nature Immunology, 2007, v. 8, n. 6, p. 647, doi. 10.1038/ni1463

By:

Rogozin, Igor B;
Iyer, Lakshminarayan M;
Liang, Lizhi;
Glazko, Galina V;
Liston, Victoria G;
Pavlov, Youri I;
Aravind, L;
Pancer, Zeev

Publication type:

Article

Bacterial death and TRADD-N domains help define novel apoptosis and immunity mechanisms shared by prokaryotes and metazoans.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.70394

By:

Kaur, Gurmeet;
Iyer, Lakshminarayan M.;
Burroughs, A. Maxwell;
Aravind, L.

Publication type:

Article

Reformulation of an extant ATPase active site to mimic ancestral GTPase activity reveals a nucleotide base requirement for function.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.65845

By:

Updegrove, Taylor B.;
Harke, Jailynn;
Anantharaman, Vivek;
Jin Yang;
Gopalan, Nikhil;
Di Wu;
Piszczek, Grzegorz;
Stevenson, David M.;
Amador-Noguez, Daniel;
Wang, Jue D.;
Aravind, L.;
Ramamurthi, Kumaran S.

Publication type:

Article

The two faces of short-range evolutionary dynamics of regulatory modes in bacterial transcriptional regulatory networks.

Published in:

BioEssays, 2007, v. 29, n. 7, p. 625, doi. 10.1002/bies.20600

By:

Balaji, S.;
Aravind, L.

Publication type:

Article

Pathogenic Roles of CD14, Galectin-3, and OX40 during Experimental Cerebral Malaria in Mice.

Published in:

PLoS ONE, 2009, v. 4, n. 8, p. 1, doi. 10.1371/journal.pone.0006793

By:

Oakley, Miranda S.;
Majam, Victoria;
Mahajan, Babita;
Gerald, Noel;
Anantharaman, Vivek;
Ward, Jerrold M.;
Faucette, Lawrence J.;
McCutchan, Thomas F.;
Hong Zheng;
Terabe, Masaki;
Berzofsky, Jay A.;
Aravind, L.;
Kumar, Sanjai

Publication type:

Article

B. subtilis MutS2 splits stalled ribosomes into subunits without mRNA cleavage.

Published in:

EMBO Journal, 2024, v. 43, n. 4, p. 484, doi. 10.1038/s44318-023-00010-3

By:

Park, Esther N;
Mackens-Kiani, Timur;
Berhane, Rebekah;
Esser, Hanna;
Erdenebat, Chimeg;
Burroughs, A Maxwell;
Berninghausen, Otto;
Aravind, L;
Beckmann, Roland;
Green, Rachel;
Buskirk, Allen R

Publication type:

Article

Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 294, doi. 10.1038/msb.2009.52

By:

Jothi, Raja;
Balaji, S;
Wuster, Arthur;
Grochow, Joshua A;
Gsponer, Jörg;
Przytycka, Teresa M;
Aravind, L;
Babu, M Madan

Publication type:

Article

DeepECGNet: A Novel Architecture for Aortic Stenosis Detection using optimized Temporal Convolutional Network (TCN) with Attention Mechanism.

Published in:

Frontiers in Health Informatics, 2024, v. 13, n. 3, p. 1501

By:

Raj V., Francis Densil;
L. R., Aravind Babu;
S., Sivakannan

Publication type:

Article

Global transcriptional effects of PEG-IFN-α and ribavirin on peripheral blood cells obtained from patients with chronic hepatitis C

Published in:

Hepatology Research, 2006, v. 36, n. 4, p. 277, doi. 10.1016/j.hepres.2006.08.007

By:

Balan, Vijayan;
Aravind, L.;
Grill, Diane E.;
Therneau, Terry M.;
Sulkowski, Mark S.;
Nelson, David R.;
Praestgaard, Jens;
Rosati, Marianne;
Birse, Charles E.;
Moore, Paul A.;
Mani Subramanian, G.

Publication type:

Article

Babesia microti : Pathogen Genomics, Genetic Variability, Immunodominant Antigens, and Pathogenesis.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.697669

By:

Puri, Ankit;
Bajpai, Surabhi;
Meredith, Scott;
Aravind, L.;
Krause, Peter J.;
Kumar, Sanjai

Publication type:

Article

Analysis of two domains with novel RNA-processing activities throws light on the complex evolution of ribosomal RNA biogenesis.

Published in:

Frontiers in Genetics, 2014, v. 5, p. 1, doi. 10.3389/fgene.2014.00424

By:

Burroughs, A. Maxwell;
Aravind, L.;
Emes, Richard D.;
Dlakic, Mensur

Publication type:

Article

Gene flow and biological conflict systems in the origin and evolution of eukaryotes.

Published in:

Frontiers in Cellular & Infection Microbiology, 2012, v. 2, p. 1, doi. 10.3389/fcimb.2012.00089

By:

Aravind, L.;
Anantharaman, Vivek;
Dapeng Zhang;
de Souza, Robson F.;
Iyer, Lakshminarayan M.

Publication type:

Article

Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage.

Published in:

Environmental Microbiology, 2000, v. 2, n. 5, p. 516

By:

Béjà, Oded;
Suzuki, Marcelino T.;
Koonin, Eugene V.;
Aravind, L.;
Hadd, Andrew;
Nguyen, Linh P.;
Villacorta, Rachel;
Amjadi, Mojgan;
Garrigues, Corey;
Jovanovich, Stevan B.;
Feldman, Robert A.;
DeLong, Edward F.

Publication type:

Article

An antisense RNA controls synthesis of an SOS-induced toxin evolved from an antitoxin.

Published in:

Molecular Microbiology, 2007, v. 64, n. 3, p. 738, doi. 10.1111/j.1365-2958.2007.05688.x

By:

Kawano, Mitsuoki;
Aravind, L.;
Storz, Gisela

Publication type:

Article

Multiple transporters associated with malaria parasite responses to chloroquine and quinine.

Published in:

Molecular Microbiology, 2003, v. 49, n. 4, p. 977, doi. 10.1046/j.1365-2958.2003.03627.x

By:

Mu, Jianbing;
Ferdig, Michael T.;
Feng, Xiaorong;
Joy, Deirdre A.;
Duan, Junhui;
Furuya, Tetsuya;
Subramanian, G.;
Aravind, L.;
Cooper, Roland A.;
Wootton, John C.;
Xiong, Momiao;
Su, Xin-zhuan

Publication type:

Article

New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing.

Published in:

Wiley Interdisciplinary Reviews: RNA, 2014, v. 5, n. 2, p. 141, doi. 10.1002/wrna.1210

By:

Burroughs, Alexander Maxwell;
Ando, Yoshinari;
Aravind, L

Publication type:

Article

Keystone Flap: Versatile Flap for Reconstruction of Limb Defects.

Published in:

Journal of Clinical & Diagnostic Research, 2015, v. 9, n. 3, p. 5, doi. 10.7860/JCDR/2015/12595.5631

By:

RAO, ARAVIND L.;
JANNA, RAKESH K.

Publication type:

Article

The Scaffolding Protein Synapse-Associated Protein 97 Is Required for Enhanced Signaling Through Isotype-Switched IgG Memory B Cell Receptors.

Published in:

Science Signaling, 2012, v. 5, n. 235, p. 1, doi. 10.1126/scisignal.2002820

By:

Wanli Liu;
Elizabeth Chen;
Xing Wang Zhao;
Zheng Peng Wan;
Yi Ren Gao;
Angel Davey;
Eric Huang;
Lijia Zhang;
Crocetti, Jillian;
Sandoval, Gabriel;
Joyce, M. Gordon;
Miceli, Carrie;
Lukszo, Jan;
Aravind, L.;
Swat, Wojciech;
Brzostowski, Joseph;
Pierce, Susan K.

Publication type:

Article

THE KNICKKOPF DOMON DOMAIN IS ESSENTIAL FOR CUTICLE DIFFERENTIATION IN Drosophila melanogaster.

Published in:

Archives of Insect Biochemistry & Physiology, 2014, v. 86, n. 2, p. 100, doi. 10.1002/arch.21165

By:

Shaik, Khaleelulla Saheb;
Wang, Yiwen;
Aravind, L.;
Moussian, Bernard

Publication type:

Article

The eukaryotic translation initiation regulator CDC123 defines a divergent clade of ATP-grasp enzymes with a predicted role in novel protein modifications.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0053-x

By:

Maxwell Burroughs, A.;
Zhang, Dapeng;
Aravind, L.

Publication type:

Article

Novel autoproteolytic and DNA-damage sensing components in the bacterial SOS response and oxidized methylcytosine-induced eukaryotic DNA demethylation systems.

Published in:

Biology Direct, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1745-6150-8-20

By:

Aravind, L.;
Anand, Swadha;
Iyer, Lakshminarayan M.

Publication type:

Article

Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing.

Published in:

Biology Direct, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1745-6150-8-15

By:

Anantharaman, Vivek;
Makarova, Kira S.;
Maxwell Burroughs, A.;
Koonin, Eugene V.;
Aravind, L.

Publication type:

Article

Two novel PIWI families: roles in inter-genomic conflicts in bacteria and Mediator-dependent modulation of transcription in eukaryotes.

Published in:

Biology Direct, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1745-6150-8-13

By:

Maxwell Burroughs, A.;
Iyer, Lakshminarayan M.;
Aravind, L.

Publication type:

Article

ALOG domains: provenance of plant homeotic and developmental regulators from the DNA-binding domain of a novel class of DIRS1-type retroposons.

Published in:

Biology Direct, 2012, v. 7, n. 1, p. 39, doi. 10.1186/1745-6150-7-39

By:

Iyer, Lakshminarayan M.;
Aravind, L.

Publication type:

Article

Live virus-free or die: coupling of antivirus immunity and programmed suicide or dormancy in prokaryotes.

Published in:

Biology Direct, 2012, v. 7, n. 1, p. 40, doi. 10.1186/1745-6150-7-40

By:

Makarova, Kira S.;
Anantharaman, Vivek;
Aravind, L.;
Koonin, Eugene V.

Publication type:

Article

Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics.

Published in:

Biology Direct, 2012, v. 7, n. 1, p. 18, doi. 10.1186/1745-6150-7-18

By:

Dapeng Zhang;
de Souza, Robson F.;
Anantharaman, Vivek;
Iyer, Lakshminarayan M.;
Aravind, L.;
A. M.;
F. E.;
I. Z.

Publication type:

Article

Predicted class-I aminoacyl tRNA synthetase-like proteins in non-ribosomal peptide synthesis.

Published in:

Biology Direct, 2010, v. 5, p. 48, doi. 10.1186/1745-6150-5-48

By:

Aravind, L.;
de Souza, Robson F.;
Iyer, Lakshminarayan M.

Publication type:

Article

Presence of a classical RRM-fold palm domain inThg1-type 3'- 5'nucleic acid polymerases and theorigin of the GGDEF and CRISPR polymerasedomains.

Published in:

Biology Direct, 2010, v. 5, p. 43, doi. 10.1186/1745-6150-5-43

By:

Anantharaman, Vivek;
Iyer, Lakshminarayan M.;
Aravind, L.

Publication type:

Article

OST-HTH: a novel predicted RNA-binding domain.

Published in:

Biology Direct, 2010, v. 5, p. 13, doi. 10.1186/1745-6150-5-13

By:

Anantharaman, Vivek;
Dapeng Zhang;
Aravind, L.

Publication type:

Article

Novel eukaryotic enzymes modifying cell-surface biopolymers.

Published in:

Biology Direct, 2010, v. 5, p. 1, doi. 10.1186/1745-6150-5-1

By:

Anantharaman, Vivek;
Aravind, L.

Publication type:

Article