Works by Antes, Iris

Results: 38

Key Features Relevant to Select Antigens and TCR From the MHC-Mismatched Repertoire to Treat Cancer.

Published in:

Frontiers in Immunology, 2019, p. N.PAG, doi. 10.3389/fimmu.2019.01485

By:

Audehm, Stefan;
Glaser, Manuel;
Pecoraro, Matteo;
Bräunlein, Eva;
Mall, Sabine;
Klar, Richard;
Effenberger, Manuel;
Albers, Julian;
Bianchi, Henrique de Oliveira;
Peper, Janet;
Yusufi, Nahid;
Busch, Dirk H.;
Stevanović, Stefan;
Mann, Matthias;
Antes, Iris;
Krackhardt, Angela M.

Publication type:

Article

Predicting the bioactive conformations of macrocycles: a molecular dynamics-based docking procedure with DynaDock.

Published in:

Journal of Molecular Modeling, 2019, v. 25, n. 7, p. N.PAG, doi. 10.1007/s00894-019-4077-5

By:

Ugur, Ilke;
Schroft, Maja;
Marion, Antoine;
Glaser, Manuel;
Antes, Iris

Publication type:

Article

DynaDom: structure-based prediction of T cell receptor inter-domain and T cell receptor-peptide-MHC (class I) association angles.

Published in:

BMC Structural Biology, 2017, p. 1, doi. 10.1186/s12900-016-0071-7

By:

Hoffmann, Thomas;
Marion, Antoine;
Antes, Iris

Publication type:

Article

Distinct conformational and energetic features define the specific recognition of (di)aromatic peptide motifs by PEX14.

Published in:

Biological Chemistry, 2023, v. 404, n. 2/3, p. 179, doi. 10.1515/hsz-2022-0177

By:

Gopalswamy, Mohanraj;
Zheng, Chen;
Gaussmann, Stefan;
Kooshapur, Hamed;
Hambruch, Eva;
Schliebs, Wolfgang;
Erdmann, Ralf;
Antes, Iris;
Sattler, Michael

Publication type:

Article

The effect of motional averaging on the calculation of NMR-derived structural properties.

Published in:

Proteins, 1999, v. 36, n. 4, p. 542, doi. 10.1002/(SICI)1097-0134(19990901)36:4<542::AID-PROT17>3.0.CO;2-M

By:

Daura, Xavier;
Antes, Iris;
van Gunsteren, Wilfred F.;
Thiel, Walter;
Mark, Alan E.

Publication type:

Article

Quantitative Analysis of the Association Angle between T-cell Receptor Vα/Vβ Domains Reveals Important Features for Epitope Recognition.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 7, p. 1, doi. 10.1371/journal.pcbi.1004244

By:

Hoffmann, Thomas;
Krackhardt, Angela M.;
Antes, Iris

Publication type:

Article

Identification of CYP106A2 as a Regioselective Allylic Bacterial Diterpene Hydroxylase.

Published in:

ChemBioChem, 2011, v. 12, n. 4, p. 576, doi. 10.1002/cbic.201000404

By:

Bleif, Sabrina;
Hannemann, Frank;
Lisurek, Michael;
von Kries, Jens Peter;
Zapp, Josef;
Dietzen, Matthias;
Antes, Iris;
Bernhardt, Rita

Publication type:

Article

Theoretical and Experimental Evaluation of a CYP106A2 Low Homology Model and Production of Mutants with Changed Activity and Selectivity of Hydroxylation.

Published in:

ChemBioChem, 2008, v. 9, n. 9, p. 1439, doi. 10.1002/cbic.200700670

By:

Lisurek, Michael;
Simgen, Birgit;
Antes, Iris;
Bernhardt, Rita

Publication type:

Article

Structural and functional analysis of a novel mutation of CYP21B in a heterozygote carrier of 21-hydroxylase deficiency.

Published in:

Human Genetics, 2005, v. 117, n. 6, p. 558, doi. 10.1007/s00439-005-1339-3

By:

Bojunga, Jörg;
Welsch, Christoph;
Antes, Iris;
Albrecht, Mario;
Lengauer, Thomas;
Zeuzem, Stefan

Publication type:

Article

Natural-Product-Inspired Aminoepoxybenzoquinones Kill Members of the Gram-Negative Pathogen Salmonella by Attenuating Cellular Stress Response.

Published in:

Angewandte Chemie International Edition, 2016, v. 55, n. 47, p. 14852, doi. 10.1002/anie.201607338

By:

Mandl, Franziska A.;
Kirsch, Volker C.;
Ugur, Ilke;
Kunold, Elena;
Vomacka, Jan;
Fetzer, Christian;
Schneider, Sabine;
Richter, Klaus;
Fuchs, Thilo M.;
Antes, Iris;
Sieber, Stephan A.

Publication type:

Article

A Small Molecule Inhibits Protein Disulfide Isomerase and Triggers the Chemosensitization of Cancer Cells.

Published in:

Angewandte Chemie International Edition, 2014, v. 53, n. 47, p. 12960, doi. 10.1002/anie.201406577

By:

Eirich, Jürgen;
Braig, Simone;
Schyschka, Liliana;
Servatius, Phil;
Hoffmann, Judith;
Hecht, Sabrina;
Fulda, Simone;
Zahler, Stefan;
Antes, Iris;
Kazmaier, Uli;
Sieber, Stephan A.;
Vollmar, Angelika M.

Publication type:

Article

Parameterization of the Hamiltonian Dielectric Solvent (HADES) Reaction-Field Method for the Solvation Free Energies of Amino Acid Side-Chain Analogs.

Published in:

ChemPhysChem, 2015, v. 16, n. 8, p. 1739, doi. 10.1002/cphc.201402861

By:

Zachmann, Martin;
Mathias, Gerald;
Antes, Iris

Publication type:

Article

Cover Feature: Structure‐Guided Modulation of the Catalytic Properties of [2Fe−2S]‐Dependent Dehydratases (ChemBioChem 10/2022).

Published in:

ChemBioChem, 2022, v. 23, n. 10, p. 1, doi. 10.1002/cbic.202200187

By:

Melse, Okke;
Sutiono, Samuel;
Haslbeck, Magdalena;
Schenk, Gerhard;
Antes, Iris;
Sieber, Volker

Publication type:

Article

Structure‐Guided Modulation of the Catalytic Properties of [2Fe−2S]‐Dependent Dehydratases.

Published in:

ChemBioChem, 2022, v. 23, n. 10, p. 1, doi. 10.1002/cbic.202200088

By:

Melse, Okke;
Sutiono, Samuel;
Haslbeck, Magdalena;
Schenk, Gerhard;
Antes, Iris;
Sieber, Volker

Publication type:

Article

Acyldepsipeptide Probes Facilitate Specific Detection of Caseinolytic Protease P Independent of Its Oligomeric and Activity State.

Published in:

ChemBioChem, 2020, v. 21, n. 1/2, p. 235, doi. 10.1002/cbic.201900477

By:

Eyermann, Barbara;
Meixner, Maximilian;
Brötz‐Oesterhelt, Heike;
Antes, Iris;
Sieber, Stephan A.

Publication type:

Article

Broad spectrum antibiotic-degrading metallo-β-lactamases are phylogenetically diverse.

Published in:

2020

By:

Pedroso, Marcelo Monteiro;
Waite, David W.;
Melse, Okke;
Wilson, Liam;
Mitić, Nataša;
McGeary, Ross P.;
Antes, Iris;
Guddat, Luke W.;
Hugenholtz, Philip;
Schenk, Gerhard

Publication type:

Letter

Ca<sup>2+</sup> binding induced sequential allosteric activation of sortase A: An example for ion-triggered conformational selection.

Published in:

PLoS ONE, 2018, v. 13, n. 10, p. 1, doi. 10.1371/journal.pone.0205057

By:

Ugur, Ilke;
Schatte, Martin;
Marion, Antoine;
Glaser, Manuel;
Boenitz-Dulat, Mara;
Antes, Iris

Publication type:

Article

Amythiamicin D and Related Thiopeptides as Inhibitors of the Bacterial Elongation Factor EF-Tu: Modification of the Amino Acid at Carbon Atom C2 of Ring C Dramatically Influences Activity.

Published in:

ChemMedChem, 2013, v. 8, n. 12, p. 1954, doi. 10.1002/cmdc.201300323

By:

Gross, Stefan;
Nguyen, Fabian;
Bierschenk, Matthias;
Sohmen, Daniel;
Menzel, Thomas;
Antes, Iris;
Wilson, Daniel N.;
Bach, Thorsten

Publication type:

Article

Regulation of the hepatitis C virus RNA replicase by endogenous lipid peroxidation.

Published in:

Nature Medicine, 2014, v. 20, n. 8, p. 927, doi. 10.1038/nm.3610

By:

Yamane, Daisuke;
McGivern, David R;
Wauthier, Eliane;
Yi, MinKyung;
Madden, Victoria J;
Welsch, Christoph;
Antes, Iris;
Wen, Yahong;
Chugh, Pauline E;
McGee, Charles E;
Widman, Douglas G;
Misumi, Ichiro;
Bandyopadhyay, Sibali;
Kim, Seungtaek;
Shimakami, Tetsuro;
Oikawa, Tsunekazu;
Whitmire, Jason K;
Heise, Mark T;
Dittmer, Dirk P;
Kao, C Cheng

Publication type:

Article

Naturstoffbasierte Aminoepoxybenzochinone inhibieren das Wachstum verschiedener Serovare des Gram-negativen Krankheitserregers Salmonella durch Abschwächen der bakteriellen Stressabwehr.

Published in:

Angewandte Chemie, 2016, v. 128, n. 47, p. 15074, doi. 10.1002/ange.201607338

By:

Mandl, Franziska A.;
Kirsch, Volker C.;
Ugur, Ilke;
Kunold, Elena;
Vomacka, Jan;
Fetzer, Christian;
Schneider, Sabine;
Richter, Klaus;
Fuchs, Thilo M.;
Antes, Iris;
Sieber, Stephan A.

Publication type:

Article

Eine niedermolekulare Verbindung inhibiert die Proteindisulfidisomerase und sensibilisiert Krebszellen für die Chemotherapie.

Published in:

Angewandte Chemie, 2014, v. 126, n. 47, p. 13174, doi. 10.1002/ange.201406577

By:

Eirich, Jürgen;
Braig, Simone;
Schyschka, Liliana;
Servatius, Phil;
Hoffmann, Judith;
Hecht, Sabrina;
Fulda, Simone;
Zahler, Stefan;
Antes, Iris;
Kazmaier, Uli;
Sieber, Stephan A.;
Vollmar, Angelika M.

Publication type:

Article

Actin stabilizing compounds show specific biological effects due to their binding mode.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-46282-w

By:

Wang, Shuaijun;
Crevenna, Alvaro H.;
Ugur, Ilke;
Marion, Antoine;
Antes, Iris;
Kazmaier, Uli;
Hoyer, Maria;
Lamb, Don C.;
Gegenfurtner, Florian;
Kliesmete, Zane;
Ziegenhain, Christoph;
Enard, Wolfgang;
Vollmar, Angelika;
Zahler, Stefan

Publication type:

Article

MoFvAb: Modeling the Fv region of antibodies.

Published in:

mAbs (1942-0862), 2015, v. 7, n. 5, p. 838, doi. 10.1080/19420862.2015.1068492

By:

Bujotzek, Alexander;
Fuchs, Angelika;
Qu, Changtao;
Benz, Jörg;
Klostermann, Stefan;
Antes, Iris;
Georges, Guy

Publication type:

Article

SenseNet, a tool for analysis of protein structure networks obtained from molecular dynamics simulations.

Published in:

PLoS ONE, 2022, v. 17, n. 3, p. 1, doi. 10.1371/journal.pone.0265194

By:

Schneider, Markus;
Antes, Iris

Publication type:

Article

Predicting MHC class I epitopes in large datasets.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 90, doi. 10.1186/1471-2105-11-90

By:

Roomp, Kirsten;
Antes, Iris;
Lengauer, Thomas

Publication type:

Article

Molecular dynamics simulations of photoactive yellow protein (PYP) in three states of its photocycle: a comparison with X-ray and NMR data and analysis of the effects of Glu46 deprotonation and mutation.

Published in:

European Biophysics Journal, 2002, v. 31, n. 7, p. 504, doi. 10.1007/s00249-002-0243-1

By:

Antes, Iris;
Thiel, Walter;
van Gunsteren, Wilfred F.

Publication type:

Article

1,5-Disubstituted 1,2,3-Triazole-Containing Peptidotriazolamers: Design Principles for a Class of Versatile Peptidomimetics.

Published in:

Chemistry - A European Journal, 2018, v. 24, n. 4, p. 953, doi. 10.1002/chem.201704583

By:

Kracker, Oliver;
Gjra, Jerzy;
Krzciuk-Gula, Joanna;
Marion, Antoine;
Neumann, Beate;
Stammler, Hans-Georg;
Nieß, Anke;
Antes, Iris;
Latajka, Rafał;
Sewald, Norbert

Publication type:

Article

Recognition of 5-Hydroxymethylcytosine by the Uhrf1 SRA Domain.

Published in:

PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0021306

By:

Frauer, Carina;
Hoffmann, Thomas;
Bultmann, Sebastian;
Casa, Valentina;
Cardoso, M. Cristina;
Antes, Iris;
Leonhardt, Heinrich

Publication type:

Article

BiPPred: Combined sequence- and structure-based prediction of peptide binding to the Hsp70 chaperone BiP.

Published in:

Proteins, 2016, v. 84, n. 10, p. 1390, doi. 10.1002/prot.25084

By:

Schneider, Markus;
Rosam, Mathias;
Glaser, Manuel;
Patronov, Atanas;
Shah, Harpreet;
Back, Katrin Christiane;
Daake, Marina Angelika;
Buchner, Johannes;
Antes, Iris

Publication type:

Article

Prediction of VH-VL domain orientation for antibody variable domain modeling.

Published in:

Proteins, 2015, v. 83, n. 4, p. 681, doi. 10.1002/prot.24756

By:

Bujotzek, Alexander;
Dunbar, James;
Lipsmeier, Florian;
Schäfer, Wolfgang;
Antes, Iris;
Deane, Charlotte M.;
Georges, Guy

Publication type:

Article

DynaDock: A new molecular dynamics-based algorithm for protein-peptide docking including receptor flexibility.

Published in:

Proteins, 2010, v. 78, n. 5, p. 1084, doi. 10.1002/prot.22629

By:

Antes, Iris

Publication type:

Article

Docking and scoring with alternative side-chain conformations.

Published in:

Proteins, 2009, v. 74, n. 3, p. 712, doi. 10.1002/prot.22189

By:

Hartmann, Christoph;
Antes, Iris;
Lengauer, Thomas

Publication type:

Article

Systematic analysis of the binding behaviour of UHRF1 towards different methyl- and carboxylcytosine modification patterns at CpG dyads.

Published in:

PLoS ONE, 2020, v. 15, n. 2, p. 1, doi. 10.1371/journal.pone.0229144

By:

Schneider, Markus;
Trummer, Carina;
Stengl, Andreas;
Zhang, Peng;
Szwagierczak, Aleksandra;
Cardoso, M. Cristina;
Leonhardt, Heinrich;
Bauer, Christina;
Antes, Iris

Publication type:

Article

Benchmarking biomolecular force field‐based Zn<sup>2+</sup> for mono‐ and bimetallic ligand binding sites.

Published in:

Journal of Computational Chemistry, 2023, v. 44, n. 8, p. 912, doi. 10.1002/jcc.27052

By:

Melse, Okke;
Antes, Iris;
Kaila, Ville R. I.;
Zacharias, Martin

Publication type:

Article

Dimerization of the hepatitis C virus nonstructural protein 4B depends on the integrity of an aminoterminal basic leucine zipper.

Published in:

Protein Science: A Publication of the Protein Society, 2010, v. 19, n. 7, p. 1327, doi. 10.1002/pro.409

By:

Welker, Martin-Walter;
Welsch, Christoph;
Meyer, Aline;
Antes, Iris;
Albrecht, Mario;
Forestier, Nicole;
Kronenberger, Bernd;
Lengauer, Thomas;
Piiper, Albrecht;
Zeuzem, Stefan;
Sarrazin, Christoph

Publication type:

Article

IRECS: A new algorithm for the selection of most probable ensembles of side-chain conformations in protein models.

Published in:

Protein Science: A Publication of the Protein Society, 2007, v. 16, n. 7, p. 1294, doi. 10.1110/ps.062658307

By:

Hartmann, Christoph;
Antes, Iris;
Lengauer, Thomas

Publication type:

Article

Comparison of allosteric signaling in DnaK and BiP using mutual information between simulated residue conformations.

Published in:

Proteins, 2023, v. 91, n. 2, p. 237, doi. 10.1002/prot.26425

By:

Schneider, Markus;
Antes, Iris

Publication type:

Article

DynaBiS: A hierarchical sampling algorithm to identify flexible binding sites for large ligands and peptides.

Published in:

Proteins, 2022, v. 90, n. 1, p. 18, doi. 10.1002/prot.26182

By:

Melse, Okke;
Hecht, Sabrina;
Antes, Iris

Publication type:

Article