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Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27479-y
By:
- Mesny, Fantin;
- Miyauchi, Shingo;
- Thiergart, Thorsten;
- Pickel, Brigitte;
- Atanasova, Lea;
- Karlsson, Magnus;
- Hüttel, Bruno;
- Barry, Kerrie W.;
- Haridas, Sajeet;
- Chen, Cindy;
- Bauer, Diane;
- Andreopoulos, William;
- Pangilinan, Jasmyn;
- LaButti, Kurt;
- Riley, Robert;
- Lipzen, Anna;
- Clum, Alicia;
- Drula, Elodie;
- Henrissat, Bernard;
- Kohler, Annegret
Publication type:
Article
The extracellular contractile injection system is enriched in environmental microbes and associates with numerous toxins.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23777-7
By:
- Geller, Alexander Martin;
- Pollin, Inbal;
- Zlotkin, David;
- Danov, Aleks;
- Nachmias, Nimrod;
- Andreopoulos, William B.;
- Shemesh, Keren;
- Levy, Asaf
Publication type:
Article
Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation.
Published in:
IMA Fungus, 2021, v. 12, n. 1, p. 1, doi. 10.1186/s43008-021-00072-0
By:
- Hagestad, Ole Christian;
- Hou, Lingwei;
- Andersen, Jeanette H.;
- Hansen, Espen H.;
- Altermark, Bjørn;
- Li, Chun;
- Kuhnert, Eric;
- Cox, Russell J.;
- Crous, Pedro W.;
- Spatafora, Joseph W.;
- Lail, Kathleen;
- Amirebrahimi, Mojgan;
- Lipzen, Anna;
- Pangilinan, Jasmyn;
- Andreopoulos, William;
- Hayes, Richard D.;
- Ng, Vivian;
- Grigoriev, Igor V.;
- Jackson, Stephen A.;
- Sutton, Thomas D. S.
Publication type:
Article
Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus.
Published in:
Molecular Biology & Evolution, 2023, v. 40, n. 3, p. 1, doi. 10.1093/molbev/msad045
By:
- Plett, Jonathan M;
- Miyauchi, Shingo;
- Morin, Emmanuelle;
- Plett, Krista;
- Wong-Bajracharya, Johanna;
- Pereira, Maira de Freitas;
- Kuo, Alan;
- Henrissat, Bernard;
- Drula, Elodie;
- Wojtalewicz, Dominika;
- Riley, Robert;
- Pangilinan, Jasmyn;
- Andreopoulos, William;
- LaButti, Kurt;
- Daum, Chris;
- Yoshinaga, Yuko;
- Fauchery, Laure;
- Ng, Vivian;
- Lipzen, Anna;
- Barry, Kerrie
Publication type:
Article
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Published in:
Frontiers in Bioengineering & Biotechnology, 2024, p. 1, doi. 10.3389/fbioe.2024.1356551
By:
- Czajka, Jeffrey J.;
- Yichao Han;
- Joonhoon Kim;
- Mondo, Stephen J.;
- Hofstad, Beth A.;
- Robles, AnaLaura;
- Haridas, Sajeet;
- Riley, Robert;
- LaButti, Kurt;
- Pangilinan, Jasmyn;
- Andreopoulos, William;
- Lipzen, Anna;
- Juying Yan;
- Mei Wang;
- Vivian Ng;
- Grigoriev, Igor V.;
- Spatafora, Joseph W.;
- Magnuson, Jon K.;
- Baker, Scott E.;
- Pomraning, Kyle R.
Publication type:
Article
Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk‐cap (Lactarius) mushrooms.
Published in:
New Phytologist, 2022, v. 235, n. 1, p. 306, doi. 10.1111/nph.18143
By:
- Lebreton, Annie;
- Tang, Nianwu;
- Kuo, Alan;
- LaButti, Kurt;
- Andreopoulos, William;
- Drula, Elodie;
- Miyauchi, Shingo;
- Barry, Kerrie;
- Clum, Alicia;
- Lipzen, Anna;
- Mousain, Daniel;
- Ng, Vivian;
- Wang, Ran;
- Dai, Yucheng;
- Henrissat, Bernard;
- Grigoriev, Igor V.;
- Guerin‐Laguette, Alexis;
- Yu, Fuqiang;
- Martin, Francis M.
Publication type:
Article
Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi.
Published in:
New Phytologist, 2022, v. 233, n. 5, p. 2294, doi. 10.1111/nph.17892
By:
- Looney, Brian;
- Miyauchi, Shingo;
- Morin, Emmanuelle;
- Drula, Elodie;
- Courty, Pierre Emmanuel;
- Kohler, Annegret;
- Kuo, Alan;
- LaButti, Kurt;
- Pangilinan, Jasmyn;
- Lipzen, Anna;
- Riley, Robert;
- Andreopoulos, William;
- He, Guifen;
- Johnson, Jenifer;
- Nolan, Matt;
- Tritt, Andrew;
- Barry, Kerrie W.;
- Grigoriev, Igor V.;
- Nagy, László G.;
- Hibbett, David
Publication type:
Article
Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi.
Published in:
New Phytologist, 2021, v. 230, n. 2, p. 774, doi. 10.1111/nph.17160
By:
- Lofgren, Lotus A.;
- Nguyen, Nhu H.;
- Vilgalys, Rytas;
- Ruytinx, Joske;
- Liao, Hui‐Ling;
- Branco, Sara;
- Kuo, Alan;
- LaButti, Kurt;
- Lipzen, Anna;
- Andreopoulos, William;
- Pangilinan, Jasmyn;
- Riley, Robert;
- Hundley, Hope;
- Na, Hyunsoo;
- Barry, Kerrie;
- Grigoriev, Igor V.;
- Stajich, Jason E.;
- Kennedy, Peter G.
Publication type:
Article
Deeplasmid: deep learning accurately separates plasmids from bacterial chromosomes.
Published in:
Nucleic Acids Research, 2022, v. 50, n. 3, p. e17, doi. 10.1093/nar/gkab1115
By:
- Andreopoulos, William B;
- Geller, Alexander M;
- Lucke, Miriam;
- Balewski, Jan;
- Clum, Alicia;
- Ivanova, Natalia N;
- Levy, Asaf
Publication type:
Article
Community Detection Using Deep Learning: Combining Variational Graph Autoencoders with Leiden and K-Truss Techniques.
Published in:
Information (2078-2489), 2024, v. 15, n. 9, p. 568, doi. 10.3390/info15090568
By:
- Patil, Jyotika Hariom;
- Potikas, Petros;
- Andreopoulos, William B.;
- Potika, Katerina
Publication type:
Article

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