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Anomalous networks under the multispecies coalescent: theory and prevalence.
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- Journal of Mathematical Biology, 2024, v. 88, n. 3, p. 1, doi. 10.1007/s00285-024-02050-7
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- Article
Ecophysiological adaptations shape distributions of closely related trees along a climatic moisture gradient.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42352-w
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- Article
Summary Tests of Introgression Are Highly Sensitive to Rate Variation Across Lineages.
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- Systematic Biology, 2023, v. 72, n. 6, p. 1357, doi. 10.1093/sysbio/syad056
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- Article
PhyloCoalSimulations: A Simulator for Network Multispecies Coalescent Models, Including a New Extension for the Inheritance of Gene Flow.
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- Systematic Biology, 2023, v. 72, n. 5, p. 1171, doi. 10.1093/sysbio/syad030
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- Article
Phylotranscriptomic Analyses of Mycoheterotrophic Monocots Show a Continuum of Convergent Evolutionary Changes in Expressed Nuclear Genes From Three Independent Nonphotosynthetic Lineages.
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- Genome Biology & Evolution, 2023, v. 15, n. 1, p. 1, doi. 10.1093/gbe/evac183
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Identifiability of local and global features of phylogenetic networks from average distances.
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- Journal of Mathematical Biology, 2023, v. 86, n. 1, p. 1, doi. 10.1007/s00285-022-01847-8
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Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes.
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- Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.876779
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- Article
KIMGENS: a novel method to estimate kinship in organisms with mixed haploid diploid genetic systems robust to population structure.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3044, doi. 10.1093/bioinformatics/btac293
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- Article
Evidence for hawkmoth pollination in the chiropterophilous African baobab (Adansonia digitata).
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- Biotropica, 2022, v. 54, n. 1, p. 113, doi. 10.1111/btp.13033
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- Article
Assessing the fit of the multi-species network coalescent to multi-locus data.
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- Bioinformatics, 2021, v. 37, n. 5, p. 634, doi. 10.1093/bioinformatics/btaa863
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- Article
Reticulate Evolution Helps Explain Apparent Homoplasy in Floral Biology and Pollination in Baobabs (Adansonia; Bombacoideae; Malvaceae).
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- Systematic Biology, 2020, v. 69, n. 3, p. 462, doi. 10.1093/sysbio/syz073
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- Article
Phylogenetic Trees and Networks Can Serve as Powerful and Complementary Approaches for Analysis of Genomic Data.
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- Systematic Biology, 2020, v. 69, n. 3, p. 593, doi. 10.1093/sysbio/syz056
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- Article
Correction: Using HSV-1 Genome Phylogenetics to Track Past Human Migrations.
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- PLoS ONE, 2019, v. 14, n. 5, p. 1, doi. 10.1371/journal.pone.0217890
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- Article
A Malvaceae mystery: A mallow maelstrom of genome multiplications and maybe misleading methods?
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- Journal of Integrative Plant Biology, 2019, v. 61, n. 1, p. 12, doi. 10.1111/jipb.12746
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- Article
Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi‐gene analyses, and a functional model for the origin of monocots.
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- American Journal of Botany, 2018, v. 105, n. 11, p. 1888, doi. 10.1002/ajb2.1178
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- Article
Phylogenetic Comparative Methods on Phylogenetic Networks with Reticulations.
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- Systematic Biology, 2018, v. 67, n. 5, p. 800, doi. 10.1093/sysbio/syy033
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Inference of Adaptive Shifts for Multivariate Correlated Traits.
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- Systematic Biology, 2018, v. 67, n. 4, p. 662, doi. 10.1093/sysbio/syy005
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- Article
Phase transition on the convergence rate of parameter estimation under an Ornstein-Uhlenbeck diffusion on a tree.
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- Journal of Mathematical Biology, 2017, v. 74, n. 1/2, p. 355, doi. 10.1007/s00285-016-1029-x
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- Article
Rphylopars: fast multivariate phylogenetic comparative methods for missing data and within-species variation.
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- Methods in Ecology & Evolution, 2017, v. 8, n. 1, p. 22, doi. 10.1111/2041-210X.12612
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- Article
Inconsistency of Species Tree Methods under Gene Flow.
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- Systematic Biology, 2016, v. 65, n. 5, p. 843, doi. 10.1093/sysbio/syw030
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Fast and accurate detection of evolutionary shifts in Ornstein-Uhlenbeck models.
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- Methods in Ecology & Evolution, 2016, v. 7, n. 7, p. 811, doi. 10.1111/2041-210X.12534
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Statistical evidence for common ancestry: Application to primates.
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- Evolution, 2016, v. 70, n. 6, p. 1354, doi. 10.1111/evo.12934
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Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data.
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- Genome Biology & Evolution, 2016, v. 8, n. 4, p. 1023, doi. 10.1093/gbe/evw058
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- Article
Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting.
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- PLoS Genetics, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pgen.1005896
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- Article
Exploring Tree-Like and Non-Tree-Like Patterns Using Genome Sequences: An Example Using the Inbreeding Plant Species Arabidopsis thaliana (L.) Heynh.
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- Systematic Biology, 2015, v. 64, n. 5, p. 809, doi. 10.1093/sysbio/syv039
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- Article
Bayesian species delimitation combining multiple genes and traits in a unified framework.
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- Evolution, 2015, v. 69, n. 2, p. 492, doi. 10.1111/evo.12582
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Intrinsic inference difficulties for trait evolution with Ornstein-Uhlenbeck models.
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- Methods in Ecology & Evolution, 2014, v. 5, n. 11, p. 1133, doi. 10.1111/2041-210X.12285
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- Article
A Linear-Time Algorithm for Gaussian and Non-Gaussian Trait Evolution Models.
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- Systematic Biology, 2014, v. 63, n. 3, p. 397, doi. 10.1093/sysbio/syu005
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- Article
Detecting and Locating Whole Genome Duplications on a Phylogeny: A Probabilistic Approach.
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- Molecular Biology & Evolution, 2014, v. 31, n. 3, p. 750, doi. 10.1093/molbev/mst263
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- Article
THE EVOLUTION OF HYBRID INCOMPATIBILITIES ALONG A PHYLOGENY.
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- Evolution, 2013, v. 67, n. 10, p. 2905, doi. 10.1111/evo.12173
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- Article
Using HSV-1 Genome Phylogenetics to Track Past Human Migrations.
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- PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0076267
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- Article
LOCATING EVOLUTIONARY PRECURSORS ON A PHYLOGENETIC TREE.
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- Evolution, 2012, v. 66, n. 12, p. 3918, doi. 10.1111/j.1558-5646.2012.01720.x
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- Article
Mapping Quantitative Trait Loci onto a Phylogenetic Tree.
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- Genetics, 2012, v. 192, n. 1, p. 267, doi. 10.1534/genetics.112.142448
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- Article
Comparing Two Bayesian Methods for Gene Tree/Species Tree Reconstruction: Simulations with Incomplete Lineage Sorting and Horizontal Gene Transfer.
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- Systematic Biology, 2011, v. 60, n. 3, p. 261, doi. 10.1093/sysbio/syr003
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Detecting Phylogenetic Breakpoints and Discordance from Genome-Wide Alignments for Species Tree Reconstruction.
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- Genome Biology & Evolution, 2011, v. 2011, n. 13, p. 246
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BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis.
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- Bioinformatics, 2010, v. 26, n. 22, p. 2910, doi. 10.1093/bioinformatics/btq539
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Fine-Scale Phylogenetic Discordance across the House Mouse Genome.
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- PLoS Genetics, 2009, v. 5, n. 11, p. 1, doi. 10.1371/journal.pgen.1000729
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MACROEVOLUTIONARY TESTS OF POLLINATION SYNDROMES: A REPLY TO FENSTER ET AL.
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- Evolution, 2009, v. 63, n. 10, p. 2763, doi. 10.1111/j.1558-5646.2009.00732.x
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- Article
Groves of Phylogenetic Trees.
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- Annals of Combinatorics, 2009, v. 13, n. 2, p. 139, doi. 10.1007/s00026-009-0017-x
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A Bayesian Perspective on a Non-parsimonious Parsimony Model.
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- Systematic Biology, 2008, v. 57, n. 3, p. 406, doi. 10.1080/10635150802166046
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- Article
THE ROLE OF POLLINATOR SHIFTS IN THE FLORAL DIVERSIFICATION OF IOCHROMA (SOLANACEAE).
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- Evolution, 2008, v. 62, n. 4, p. 793, doi. 10.1111/j.1558-5646.2008.00327.x
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- Article
IDENTIFIABILITY OF A MARKOVIAN MODEL OF MOLECULAR EVOLUTION WITH GAMMA-DISTRIBUTED RATES.
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- Advances in Applied Probability, 2008, v. 40, n. 1, p. 229, doi. 10.1239/aap/1208358894
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TESTING FOR DIFFERENT RATES OF CONTINUOUS TRAIT EVOLUTION USING LIKELIHOOD.
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- Evolution, 2006, v. 60, n. 5, p. 922, doi. 10.1554/05-130.1
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- Article
Covarion Structure in Plastid Genome Evolution: A New Statistical Test.
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- Molecular Biology & Evolution, 2005, v. 22, n. 4, p. 914, doi. 10.1093/molbev/msi076
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- Article
Population pharmacokinetics/pharmacodynamics relationships of an anticancer drug.
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- Statistics in Medicine, 2003, v. 22, n. 6, p. 833, doi. 10.1002/sim.1448
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On logarithmic Sobolev inequalities for continuous time random walks on graphs.
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- Probability Theory & Related Fields, 2000, v. 116, n. 4
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- Article