Works matching AU Amaro, Rommie E.


Results: 50
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    Simulation-driven design of stabilized SARS-CoV-2 spike S2 immunogens.

    Published in:
    Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-50976-9
    By:
    • Nuqui, Xandra;
    • Casalino, Lorenzo;
    • Zhou, Ling;
    • Shehata, Mohamed;
    • Wang, Albert;
    • Tse, Alexandra L.;
    • Ojha, Anupam A.;
    • Kearns, Fiona L.;
    • Rosenfeld, Mia A.;
    • Miller, Emily Happy;
    • Acreman, Cory M.;
    • Ahn, Surl-Hee;
    • Chandran, Kartik;
    • McLellan, Jason S.;
    • Amaro, Rommie E.
    Publication type:
    Article
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    Structural Characterization of a Minimal Antibody against Human APOBEC3B.

    Published in:
    Viruses (1999-4915), 2021, v. 13, n. 4, p. 663, doi. 10.3390/v13040663
    By:
    • Tang, Heng;
    • Demir, Özlem;
    • Kurniawan, Fredy;
    • Brown, William L.;
    • Shi, Ke;
    • Moeller, Nicholas H.;
    • Carpenter, Michael A.;
    • Belica, Christopher;
    • Orellana, Kayo;
    • Du, Guocheng;
    • LeBeau, Aaron M.;
    • Amaro, Rommie E.;
    • Harris, Reuben S.;
    • Aihara, Hideki;
    • Chelico, Linda
    Publication type:
    Article
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    D3R Grand Challenge 3: blind prediction of protein-ligand poses and affinity rankings.

    Published in:
    Journal of Computer-Aided Molecular Design, 2019, v. 33, n. 1, p. 1, doi. 10.1007/s10822-018-0180-4
    By:
    • Gaieb, Zied;
    • Parks, Conor D.;
    • Chiu, Michael;
    • Yang, Huanwang;
    • Shao, Chenghua;
    • Walters, W. Patrick;
    • Lambert, Millard H.;
    • Nevins, Neysa;
    • Bembenek, Scott D.;
    • Ameriks, Michael K.;
    • Mirzadegan, Tara;
    • Burley, Stephen K.;
    • Amaro, Rommie E.;
    • Gilson, Michael K.
    Publication type:
    Article
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    Glycoproteomic landscape and structural dynamics of TIM family immune checkpoints enabled by mucinase SmE.

    Published in:
    Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-41756-y
    By:
    • Chongsaritsinsuk, Joann;
    • Steigmeyer, Alexandra D.;
    • Mahoney, Keira E.;
    • Rosenfeld, Mia A.;
    • Lucas, Taryn M.;
    • Smith, Courtney M.;
    • Li, Alice;
    • Ince, Deniz;
    • Kearns, Fiona L.;
    • Battison, Alexandria S.;
    • Hollenhorst, Marie A.;
    • Judy Shon, D.;
    • Tiemeyer, Katherine H.;
    • Attah, Victor;
    • Kwon, Catherine;
    • Bertozzi, Carolyn R.;
    • Ferracane, Michael J.;
    • Lemmon, Mark A.;
    • Amaro, Rommie E.;
    • Malaker, Stacy A.
    Publication type:
    Article
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    Pyrimidine Triones as Potential Activators of p53 Mutants.

    Published in:
    Biomolecules (2218-273X), 2024, v. 14, n. 8, p. 967, doi. 10.3390/biom14080967
    By:
    • Fallatah, Maryam M. Jebril;
    • Demir, Özlem;
    • Law, Fiona;
    • Lauinger, Linda;
    • Baronio, Roberta;
    • Hall, Linda;
    • Bournique, Elodie;
    • Srivastava, Ambuj;
    • Metzen, Landon Tyler;
    • Norman, Zane;
    • Buisson, Rémi;
    • Amaro, Rommie E.;
    • Kaiser, Peter
    Publication type:
    Article
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    Distinct pathways for evolution of enhanced receptor binding and cell entry in SARS-like bat coronaviruses.

    Published in:
    PLoS Pathogens, 2024, v. 20, n. 11, p. 1, doi. 10.1371/journal.ppat.1012704
    By:
    • Tse, Alexandra L.;
    • Acreman, Cory M.;
    • Ricardo-Lax, Inna;
    • Berrigan, Jacob;
    • Lasso, Gorka;
    • Balogun, Toheeb;
    • Kearns, Fiona L.;
    • Casalino, Lorenzo;
    • McClain, Georgia L.;
    • Chandran, Amartya Mudry;
    • Lemeunier, Charlotte;
    • Amaro, Rommie E.;
    • Rice, Charles M.;
    • Jangra, Rohit K.;
    • McLellan, Jason S.;
    • Chandran, Kartik;
    • Miller, Emily Happy
    Publication type:
    Article
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    Benchmarking ensemble docking methods in D3R Grand Challenge 4.

    Published in:
    Journal of Computer-Aided Molecular Design, 2022, v. 36, n. 2, p. 87, doi. 10.1007/s10822-021-00433-2
    By:
    • Gan, Jessie Low;
    • Kumar, Dhruv;
    • Chen, Cynthia;
    • Taylor, Bryn C.;
    • Jagger, Benjamin R.;
    • Amaro, Rommie E.;
    • Lee, Christopher T.
    Publication type:
    Article
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    D3R grand challenge 4: blind prediction of protein–ligand poses, affinity rankings, and relative binding free energies.

    Published in:
    Journal of Computer-Aided Molecular Design, 2020, v. 34, n. 2, p. 99, doi. 10.1007/s10822-020-00289-y
    By:
    • Parks, Conor D.;
    • Gaieb, Zied;
    • Chiu, Michael;
    • Yang, Huanwang;
    • Shao, Chenghua;
    • Walters, W. Patrick;
    • Jansen, Johanna M.;
    • McGaughey, Georgia;
    • Lewis, Richard A.;
    • Bembenek, Scott D.;
    • Ameriks, Michael K.;
    • Mirzadegan, Tara;
    • Burley, Stephen K.;
    • Amaro, Rommie E.;
    • Gilson, Michael K.
    Publication type:
    Article
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    Incorporation of sensing modalities into de novo designed fluorescence-activating proteins.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-18911-w
    By:
    • Klima, Jason C.;
    • Doyle, Lindsey A.;
    • Lee, Justin Daho;
    • Rappleye, Michael;
    • Gagnon, Lauren A.;
    • Lee, Min Yen;
    • Barros, Emilia P.;
    • Vorobieva, Anastassia A.;
    • Dou, Jiayi;
    • Bremner, Samantha;
    • Quon, Jacob S.;
    • Chow, Cameron M.;
    • Carter, Lauren;
    • Mack, David L.;
    • Amaro, Rommie E.;
    • Vaughan, Joshua C.;
    • Berndt, Andre;
    • Stoddard, Barry L.;
    • Baker, David
    Publication type:
    Article
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    Comparative chemical genomics reveal that the spiroindolone antimalarial KAE609 (Cipargamin) is a P-type ATPase inhibitor.

    Published in:
    Scientific Reports, 2016, p. 27806, doi. 10.1038/srep27806
    By:
    • Goldgof, Gregory M.;
    • Durrant, Jacob D.;
    • Ottilie, Sabine;
    • Vigil, Edgar;
    • Allen, Kenneth E.;
    • Gunawan, Felicia;
    • Kostylev, Maxim;
    • Henderson, Kiersten A.;
    • Yang, Jennifer;
    • Schenken, Jake;
    • LaMonte, Gregory M.;
    • Manary, Micah J.;
    • Murao, Ayako;
    • Nachon, Marie;
    • Stanhope, Rebecca;
    • Prescott, Maximo;
    • McNamara, Case W.;
    • Slayman, Carolyn W.;
    • Amaro, Rommie E.;
    • Suzuki, Yo
    Publication type:
    Article
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    Comparative chemical genomics reveal that the spiroindolone antimalarial KAE609 (Cipargamin) is a P-type ATPase inhibitor.

    Published in:
    Scientific Reports, 2016, v. 6, n. 1, p. 1, doi. 10.1038/srep27806
    By:
    • Goldgof, Gregory M.;
    • Durrant, Jacob D.;
    • Ottilie, Sabine;
    • Vigil, Edgar;
    • Allen, Kenneth E.;
    • Gunawan, Felicia;
    • Kostylev, Maxim;
    • Henderson, Kiersten A.;
    • Yang, Jennifer;
    • Schenken, Jake;
    • LaMonte, Gregory M.;
    • Manary, Micah J.;
    • Murao, Ayako;
    • Nachon, Marie;
    • Murray, Rebecca;
    • Prescott, Maximo;
    • McNamara, Case W.;
    • Slayman, Carolyn W.;
    • Amaro, Rommie E.;
    • Suzuki, Yo
    Publication type:
    Article
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