Works matching AU Aly, Sharif S.

Results: 47

Antimicrobial drug use and its association with antimicrobial resistance in fecal commensals from cows on California dairies.

Published in:

Frontiers in Veterinary Science, 2025, p. 1, doi. 10.3389/fvets.2024.1504640

By:

Abdelfattah, Essam M.;
Ekong, Pius S.;
Okello, Emmanuel;
Chamchoy, Tapakorn;
Karle, Betsy M.;
Black, Randi A.;
ElAshmawy, Wagdy;
Sheedy, David;
Williams, Deniece R.;
Lehenbauer, Terry W.;
Byrne, Barbara A.;
Aly, Sharif S.

Publication type:

Article

A nested compartmental model to assess the efficacy of paratuberculosis control measures on U.S. dairy farms.

Published in:

PLoS ONE, 2018, v. 13, n. 10, p. 1, doi. 10.1371/journal.pone.0203190

By:

Konboon, Malinee;
Bani-Yaghoub, Majid;
Pithua, Patrick O.;
Rhee, Noah;
Aly, Sharif S.

Publication type:

Article

Components of a risk assessment tool for prevention and control of bovine respiratory disease in preweaned dairy calves.

Published in:

Animal Health Research Reviews, 2020, v. 21, n. 2, p. 153, doi. 10.1017/S1466252320000201

By:

Aly, Sharif S.;
Karle, Betsy M.;
Williams, Deniece R.;
Maier, Gabriele U.;
Dubrovsky, Sasha

Publication type:

Article

Agreement between bovine respiratory disease scoring systems for pre-weaned dairy calves.

Published in:

Animal Health Research Reviews, 2014, v. 15, n. 2, p. 148, doi. 10.1017/S1466252314000164

By:

Aly, Sharif S.;
Love, William J.;
Williams, Deniece R.;
Lehenbauer, Terry W.;
Van Eenennaam, Alison;
Drake, Christiana;
Kass, Philip H.;
Farver, Thomas B.

Publication type:

Article

Antimicrobial Susceptibility in Respiratory Pathogens and Farm and Animal Variables in Weaned California Dairy Heifers: Logistic Regression and Bayesian Network Analyses.

Published in:

Antibiotics (2079-6382), 2024, v. 13, n. 1, p. 50, doi. 10.3390/antibiotics13010050

By:

Morgan Bustamante, Brittany L.;
Chigerwe, Munashe;
Martínez-López, Beatriz;
Aly, Sharif S.;
McArthur, Gary;
ElAshmawy, Wagdy R.;
Fritz, Heather;
Williams, Deniece R.;
Wenz, John;
Depenbrock, Sarah

Publication type:

Article

Effect of Group Housing of Preweaned Dairy Calves: Health and Fecal Commensal Antimicrobial Resistance Outcomes.

Published in:

Antibiotics (2079-6382), 2023, v. 12, n. 6, p. 1019, doi. 10.3390/antibiotics12061019

By:

Breen, Martin J.;
Williams, Deniece R.;
Abdelfattah, Essam M.;
Karle, Betsy M.;
Byrne, Barbara A.;
Lehenbauer, Terry W.;
Aly, Sharif S.

Publication type:

Article

Effectiveness of Intramammary Antibiotics, Internal Teat Sealants, or Both at Dry-Off in Dairy Cows: Clinical Mastitis and Culling Outcomes.

Published in:

Antibiotics (2079-6382), 2022, v. 11, n. 7, p. 954, doi. 10.3390/antibiotics11070954

By:

Aly, Sharif S.;
Okello, Emmanuel;
ElAshmawy, Wagdy R.;
Williams, Deniece R.;
Anderson, Randall J.;
Rossitto, Paul;
Tonooka, Karen;
Glenn, Kathy;
Karle, Betsy;
Lehenbauer, Terry W.

Publication type:

Article

Factors Associated with Antimicrobial Stewardship Practices on California Dairies: One Year Post Senate Bill 27.

Published in:

Antibiotics (2079-6382), 2022, v. 11, n. 2, p. 165, doi. 10.3390/antibiotics11020165

By:

Abdelfattah, Essam M.;
Ekong, Pius S.;
Okello, Emmanuel;
Williams, Deniece R.;
Karle, Betsy M.;
Lehenbauer, Terry W.;
Aly, Sharif S.

Publication type:

Article

Antibiotic Resistance Genes and Associated Phenotypes in Escherichia coli and Enterococcus from Cattle at Different Production Stages on a Dairy Farm in Central California.

Published in:

Antibiotics (2079-6382), 2021, v. 10, n. 9, p. 1042, doi. 10.3390/antibiotics10091042

By:

Jeamsripong, Saharuetai;
Li, Xunde;
Aly, Sharif S.;
Su, Zhengchang;
Pereira, Richard V.;
Atwill, Edward R.

Publication type:

Article

Determination of neonatal serum immunoglobulin G concentrations associated with mortality during the first 4 months of life in dairy heifer calves.

Published in:

Journal of Dairy Research, 2015, v. 82, n. 4, p. 400, doi. 10.1017/S0022029915000503

By:

Chigerwe, Munashe;
Hagey, Jill V;
Aly, Sharif S

Publication type:

Article

Impact of zinc supplementation on phenotypic antimicrobial resistance of fecal commensal bacteria from pre-weaned dairy calves.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-54738-x

By:

Lee, Katie Y.;
Atwill, Edward R.;
Li, Xunde;
Feldmann, Hillary R.;
Williams, Deniece R.;
Weimer, Bart C.;
Aly, Sharif S.

Publication type:

Article

Impact of zinc supplementation on phenotypic antimicrobial resistance of fecal commensal bacteria from pre-weaned dairy calves.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-54738-x

By:

Lee, Katie Y.;
Atwill, Edward R.;
Li, Xunde;
Feldmann, Hillary R.;
Williams, Deniece R.;
Weimer, Bart C.;
Aly, Sharif S.

Publication type:

Article

Unveiling the microbiome during post-partum uterine infection: a deep shotgun sequencing approach to characterize the dairy cow uterine microbiome.

Published in:

Animal Microbiome, 2023, v. 5, n. 1, p. 1, doi. 10.1186/s42523-023-00281-5

By:

Basbas, Carl;
Garzon, Adriana;
Schlesener, Cory;
van Heule, Machteld;
Profeta, Rodrigo;
Weimer, Bart C.;
Silva-del-Rio, Noelia;
Byrne, Barbara A.;
Karle, Betsy;
Aly, Sharif S.;
Lima, Fabio S.;
Pereira, Richard V.

Publication type:

Article

Quantification of antibiotic resistance genes and mobile genetic in dairy manure.

Published in:

PeerJ, 2021, p. 1, doi. 10.7717/peerj.12408

By:

Yi Wang;
Pandey, Pramod;
Chiu, Colleen;
Jeannotte, Richard;
Kuppu, Sundaram;
Zhang, Ruihong;
Pereira, Richard;
Weimer, Bart C.;
Nitin, Nitin;
Aly, Sharif S.

Publication type:

Article

Development of a multiplex qPCR assay for the simultaneous detection of Mycoplasma bovis, Mycoplasma species, and Acholeplasma laidlawii in milk.

Published in:

PeerJ, 2021, p. 1, doi. 10.7717/peerj.11881

By:

Chauhan, Kanika;
Aly, Sharif S.;
Lehenbauer, Terry W.;
Tonooka, Karen H.;
Glenn, Kathy;
Rossitto, Paul;
Marco, Maria L.

Publication type:

Article

Dairy management practices associated with multi-drug resistant fecal commensals and Salmonella in cull cows: a machine learning approach.

Published in:

PeerJ, 2021, p. 1, doi. 10.7717/peerj.11732

By:

Pandit, Pranav S.;
Williams, Deniece R.;
Rossitto, Paul;
Adaska, John M.;
Pereira, Richard;
Lehenbauer, Terry W.;
Byrne, Barbara A.;
Xunde Li;
Atwill, Edward R.;
Aly, Sharif S.

Publication type:

Article

2018 Survey of factors associated with antimicrobial drug use and stewardship practices in adult cows on conventional California dairies: immediate post-Senate Bill 27 impact.

Published in:

PeerJ, 2021, p. 1, doi. 10.7717/peerj.11596

By:

Ekong, Pius S.;
Abdelfattah, Essam M.;
Okello, Emmanuel;
Williams, Deniece R.;
Lehenbauer, Terry W.;
Karle, Betsy M.;
Rowe, Joan D.;
Aly, Sharif S.

Publication type:

Article

2018 Survey of antimicrobial drug use and stewardship practices in adult cows on California dairies: post-Senate Bill 27.

Published in:

PeerJ, 2021, p. 1, doi. 10.7717/peerj.11515

By:

Ekong, Pius S.;
Abdelfattah, Essam M.;
Okello, Emmanuel;
Williams, Deniece R.;
Lehenbauer, Terry W.;
Karle, Betsy M.;
Rowe, Joan D.;
Marshall, Edith S.;
Aly, Sharif S.

Publication type:

Article

Epidemiology of antimicrobial resistance (AMR) on California dairies: descriptive and cluster analyses of AMR phenotype of fecal commensal bacteria isolated from adult cows.

Published in:

PeerJ, 2021, p. 1, doi. 10.7717/peerj.11108

By:

Abdelfattah, Essam M.;
Ekong, Pius S.;
Okello, Emmanuel;
Chamchoy, Tapakorn;
Karle, Betsy M.;
Black, Randi A.;
Sheedy, David;
ElAshmawy, Wagdy R.;
Williams, Deniece R.;
Califano, Daniela;
Durán Tovar, Luis Fernando;
Ongom, Jonathan;
Lehenbauer, Terry W.;
Byrne, Barbara A.;
Aly, Sharif S.

Publication type:

Article

Bayesian estimation of diagnostic accuracy of fecal culture and PCR-based tests for the detection of Salmonella enterica in California cull dairy cattle.

Published in:

PeerJ, 2020, p. 1, doi. 10.7717/peerj.8310

By:

Adaska, John M.;
Ekong, Pius S.;
Clothier, Kristin A.;
Williams, Deniece R.;
Rossitto, Paul V.;
Lehenbauer, Terry W.;
Atwill, Edward R.;
Xunde Li;
Aly, Sharif S.

Publication type:

Article

Environmental sampling to assess the bioburden of Mycobacterium avium subspecies paratuberculosis in drylot pens on California dairies.

Published in:

PeerJ, 2019, p. 1, doi. 10.7717/peerj.8081

By:

Chamchoy, Tapakorn;
Williams, Deneice R.;
Adaska, John M.;
Anderson, Randall J.;
Aly, Sharif S.

Publication type:

Article

Molecular epidemiology of coagulase-negative Staphylococcus species isolated at different lactation stages from dairy cattle in the United States.

Published in:

PeerJ, 2019, p. 1, doi. 10.7717/peerj.6749

By:

Jenkins, Stephen N.;
Okello, Emmanuel;
Rossitto, Paul V.;
Lehenbauer, Terry W.;
Champagne, John;
Penedo, Maria C. T.;
Arruda, Andréia G.;
Godden, Sandra;
Rapnicki, Paul;
Gorden, Patrick J.;
Timms, Leo L.;
Aly, Sharif S.

Publication type:

Article

Association between herd management practices and antimicrobial resistance in Salmonella spp. from cull dairy cattle in Central California.

Published in:

PeerJ, 2019, p. 1, doi. 10.7717/peerj.6546

By:

Pereira, Richard;
Williams, Deniece R.;
Rossitto, Paul;
Adaska, John;
Okello, Emmanuel;
Champagne, John;
Lehenbauer, Terry W.;
Xunde Li;
Chase, Jennifer;
Nguyen, Tran;
Pires, Alda F. A.;
Atwill, Edward R.;
Aly, Sharif S.

Publication type:

Article

Investigation of Anaplasma marginale Seroprevalence in a Traditionally Managed Large California Beef Herd.

Published in:

Veterinary Medicine International, 2016, p. 1, doi. 10.1155/2016/6186078

By:

Tucker, Thomas R.;
Aly, Sharif S.;
Maas, John;
Davy, Josh S.;
Foley, Janet E.

Publication type:

Article

Effect of Three Colostrum Diets on Passive Transfer of Immunity and Preweaning Health in Calves on a California Dairy following Colostrum Management Training.

Published in:

Veterinary Medicine International, 2014, p. 1, doi. 10.1155/2014/698741

By:

Williams, Deniece R.;
Pithua, Patrick;
Garcia, Angel;
Champagne, John;
Haines, Deborah M.;
Aly, Sharif S.

Publication type:

Article

Estimating the Rates of Acquisition and loss of Resistance of Enterobacteriaceae to Antimicrobial Drugs in Pre-Weaned Dairy Calves.

Published in:

2021

By:

Cella, Elisa;
Okello, Emmanuel;
Rossitto, Paul V.;
Cenci-Goga, Beniamino T.;
Grispoldi, Luca;
Williams, Deniece R.;
Sheedy, David B.;
Pereira, Richard;
Karle, Betsy M.;
Lehenbauer, Terry W.;
Aly, Sharif S.

Publication type:

Abstract

2019 Survey of Antimicrobial Drug Use and Stewardship Practices in Adult Cows on California Dairies: Post Senate Bill 27.

Published in:

Microorganisms, 2021, v. 9, n. 7, p. 1507, doi. 10.3390/microorganisms9071507

By:

Abdelfattah, Essam M.;
Ekong, Pius S.;
Okello, Emmanuel;
Williams, Deniece R.;
Karle, Betsy M.;
Rowe, Joan D.;
Marshall, Edith S.;
Lehenbauer, Terry W.;
Aly, Sharif S.

Publication type:

Article

Effect of Antimicrobial Treatment on the Dynamics of Ceftiofur Resistance in Enterobacteriaceae from Adult California Dairy Cows.

Published in:

Microorganisms, 2021, v. 9, n. 4, p. 828, doi. 10.3390/microorganisms9040828

By:

Sheedy, David B.;
Okello, Emmanuel;
Williams, Deniece R.;
Precht, Katie;
Cella, Elisa;
Lehenbauer, Terry W.;
Aly, Sharif S.

Publication type:

Article

Modeling highly pathogenic avian influenza transmission in wild birds and poultry in West Bengal, India.

Published in:

Scientific Reports, 2013, p. 1, doi. 10.1038/srep02175

By:

Pandit, Pranav S.;
Bunn, David A.;
Pande, Satish A.;
Aly, Sharif S.

Publication type:

Article

Whole genome sequence analysis reveals high genomic diversity and potential host-driven adaptations among multidrug-resistant Escherichia coli from pre-weaned dairy calves.

Published in:

Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1420300

By:

Lee, Katie Y.;
Schlesener, Cory L.;
Aly, Sharif S.;
Huang, Bihua C.;
Xunde Li;
Atwill, Edward R.;
Weimer, Bart C.

Publication type:

Article

Correction: Risk factors affecting dairy cattle protective grouping behavior, commonly known as bunching, against Stomoxys calcitrans (L.) on California dairies.

Published in:

2020

By:

El Ashmawy, Wagdy R.;
Williams, Deniece R.;
Gerry, Alec C.;
Champagne, John D.;
Lehenbauer, Terry W.;
Aly, Sharif S.

Publication type:

Correction Notice

Risk factors affecting dairy cattle protective grouping behavior, commonly known as bunching, against Stomoxys calcitrans (L.) on California dairies.

Published in:

PLoS ONE, 2019, v. 14, n. 11, p. 1, doi. 10.1371/journal.pone.0224987

By:

El Ashmawy, Wagdy R.;
Williams, Deniece R.;
Gerry, Alec C.;
Champagne, John D.;
Lehenbauer, Terry W.;
Aly, Sharif S.

Publication type:

Article

Effectiveness of zinc supplementation on diarrhea and average daily gain in pre-weaned dairy calves: A double-blind, block-randomized, placebo-controlled clinical trial.

Published in:

PLoS ONE, 2019, v. 14, n. 7, p. 1, doi. 10.1371/journal.pone.0219321

By:

Feldmann, Hillary R.;
Williams, Deniece R.;
Champagne, John D.;
Lehenbauer, Terry W.;
Aly, Sharif S.

Publication type:

Article

Dynamic changes in fecal bacterial microbiota of dairy cattle across the production line.

Published in:

BMC Microbiology, 2022, v. 22, n. 1, p. 1, doi. 10.1186/s12866-022-02549-3

By:

Zhao, Lei;
Li, Xunde;
Atwill, Edward R.;
Aly, Sharif S.;
Williams, Deniece R.;
Su, Zhengchang

Publication type:

Article

Dynamic changes in fecal bacterial microbiota of dairy cattle across the production line.

Published in:

BMC Microbiology, 2022, v. 22, n. 1, p. 1, doi. 10.1186/s12866-022-02549-3

By:

Zhao, Lei;
Li, Xunde;
Atwill, Edward R.;
Aly, Sharif S.;
Williams, Deniece R.;
Su, Zhengchang

Publication type:

Article

Management Practices of Bovine Mastitis and Milk Quality on Egyptian Dairies.

Published in:

Veterinary Sciences, 2023, v. 10, n. 10, p. 629, doi. 10.3390/vetsci10100629

By:

Farag, Heba S.;
Aly, Sharif S.;
Fahim, Karima M.;
Fayed, Adel A.;
Abdelfattah, Essam M.;
El-Sayed, Samah M.;
Hegazy, Yamen M.;
ElAshmawy, Wagdy R.

Publication type:

Article

Effectiveness of Intramammary Antibiotics, Internal Teat Sealants, or Both at Dry-Off in Dairy Cows: Milk Production and Somatic Cell Count Outcomes.

Published in:

Veterinary Sciences, 2022, v. 9, n. 10, p. N.PAG, doi. 10.3390/vetsci9100559

By:

ElAshmawy, Wagdy R.;
Okello, Emmanuel;
Williams, Deniece R.;
Anderson, Randall J.;
Karle, Betsy;
Lehenbauer, Terry W.;
Aly, Sharif S.

Publication type:

Article

Evaluation of antimicrobial resistance and risk factors for recovery of intrauterine Escherichia coli from cows with metritis on California commercial dairy farms.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-18347-w

By:

Basbas, Carl;
Garzon, Adriana;
Silva-del-Rio, Noelia;
Byrne, Barbara A.;
Karle, Betsy;
Aly, Sharif S.;
Champagne, John D.;
Williams, Deniece R.;
Lima, Fabio S.;
Machado, Vinicius S.;
Pereira, Richard V.

Publication type:

Article

Association of plasma haptoglobin concentration and other biomarkers with bovine respiratory disease status in pre-weaned dairy calves.

Published in:

Journal of Veterinary Diagnostic Investigation, 2019, v. 31, n. 1, p. 40, doi. 10.1177/1040638718807242

By:

Moisá, Sonia J.;
Aly, Sharif S.;
Lehenbauer, Terry W.;
Love, William J.;
Rossitto, Paul V.;
Van Eenennaam, Alison L.;
Trombetta, Sophia C.;
Bortoluzzi, Eduarda M.;
Hulbert, Lindsey E.

Publication type:

Article

Cecal infarction in neonatal calves.

Published in:

Journal of Veterinary Diagnostic Investigation, 2017, v. 29, n. 2, p. 242, doi. 10.1177/1040638716688046

By:

Adaska, John M.;
Moeller, Robert B.;
Blanchard, Patricia C.;
Aly, Sharif S.

Publication type:

Article

Sensitivity and specificity of on-farm scoring systems and nasal culture to detect bovine respiratory disease complex in preweaned dairy calves.

Published in:

Journal of Veterinary Diagnostic Investigation, 2016, v. 28, n. 2, p. 119, doi. 10.1177/1040638715626204

By:

Love, William J.;
Lehenbauer, Terry W.;
Van Eenennaam, Alison L.;
Drake, Christiana M.;
Kass, Philip H.;
Farver, Thomas B.;
Aly, Sharif S.

Publication type:

Article

Jejunal hematoma in cattle: a retrospective case analysis.

Published in:

2014

By:

Adaska, John M.;
Aly, Sharif S.;
Moeller, Robert B.;
Blanchard, Patricia C.;
Anderson, Mark;
Kinde, Hailu;
Uzal, Francisco

Publication type:

Case Study

Cost-effectiveness of diagnostic strategies to identify Mycobacterium avium subspecies paratuberculosis super-shedder cows in a large dairy herd using antibody enzyme-linked immunosorbent assays, quantitative real-time polymerase chain reaction, and ...

Published in:

Journal of Veterinary Diagnostic Investigation, 2012, v. 24, n. 5, p. 821, doi. 10.1177/1040638712452107

By:

Aly, Sharif S.;
Anderson, Randall J.;
Whitlock, Robert H.;
Fyock, Terry L.;
McAdams, Susan C.;
Byrem, Todd M.;
Jiang, Jiming;
Adaska, John M.;
Gardner, Ian A.

Publication type:

Article

Correlation between Herrold egg yolk medium culture and real-time quantitative polymerase chain reaction results for Mycobacterium avium subspecies paratuberculosis in pooled fecal and environmental samples.

Published in:

Journal of Veterinary Diagnostic Investigation, 2010, v. 22, n. 5, p. 677, doi. 10.1177/104063871002200501

By:

Aly, Sharif S.;
Mangold, Beverly L.;
Whitlock, Robert H.;
Sweeney, Raymond W.;
Anderson, Randall J.;
Jiang, Jiming;
Schukken, Ynte H.;
Hovingh, Ernest;
Wolfgang, David;
Van Kessel, Jo Ann S.;
Karns, Jeffrey S.;
Lombard, Jason E.;
Smith, Julia M.;
Gardner, Ian A.

Publication type:

Article

A randomized controlled trial on preweaning morbidity, growth and mortality in Holstein heifers fed a lacteal-derived colostrum replacer or pooled maternal colostrum.

Published in:

BMC Veterinary Research, 2013, v. 9, n. 1, p. 1, doi. 10.1186/1746-6148-9-168

By:

Aly, Sharif S;
Pithua, Patrick;
Champagne, John D;
Haines, Deborah M

Publication type:

Article

Whole-Genome Sequencing and Concordance Between Antimicrobial Susceptibility Genotypes and Phenotypes of Bacterial Isolates Associated with Bovine Respiratory Disease.

Published in:

G3: Genes | Genomes | Genetics, 2017, v. 7, n. 9, p. 3059, doi. 10.1534/g3.117.1137

By:

Owen, Joseph R.;
Noyes, Noelle;
Young, Amy E.;
Prince, Daniel J.;
Blanchard, Patricia C.;
Lehenbauer, Terry W.;
Aly, Sharif S.;
Davis, Jessica H.;
O'Rourke, Sean M.;
Abdo, Zaid;
Belk, Keith;
Miller, Michael R.;
Morley, Paul;
Van Eenennaam, Alison L.

Publication type:

Article

Stable fly activity is associated with dairy management practices and seasonal weather conditions.

Published in:

PLoS ONE, 2021, v. 16, n. 7, p. 1, doi. 10.1371/journal.pone.0253946

By:

ElAshmawy, Wagdy R.;
Abdelfattah, Essam M.;
Williams, Deniece R.;
Gerry, Alec C.;
Rossow, Heidi A.;
Lehenbauer, Terry W.;
Aly, Sharif S.

Publication type:

Article