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Evaluation of antimicrobial resistance and risk factors for recovery of intrauterine Escherichia coli from cows with metritis on California commercial dairy farms.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-18347-w
By:
- Basbas, Carl;
- Garzon, Adriana;
- Silva-del-Rio, Noelia;
- Byrne, Barbara A.;
- Karle, Betsy;
- Aly, Sharif S.;
- Champagne, John D.;
- Williams, Deniece R.;
- Lima, Fabio S.;
- Machado, Vinicius S.;
- Pereira, Richard V.
Publication type:
Article
Whole genome sequence analysis reveals high genomic diversity and potential host-driven adaptations among multidrug-resistant Escherichia coli from pre-weaned dairy calves.
Published in:
Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1420300
By:
- Lee, Katie Y.;
- Schlesener, Cory L.;
- Aly, Sharif S.;
- Huang, Bihua C.;
- Xunde Li;
- Atwill, Edward R.;
- Weimer, Bart C.
Publication type:
Article
Investigation of Anaplasma marginale Seroprevalence in a Traditionally Managed Large California Beef Herd.
Published in:
Veterinary Medicine International, 2016, p. 1, doi. 10.1155/2016/6186078
By:
- Tucker, Thomas R.;
- Aly, Sharif S.;
- Maas, John;
- Davy, Josh S.;
- Foley, Janet E.
Publication type:
Article
Effect of Three Colostrum Diets on Passive Transfer of Immunity and Preweaning Health in Calves on a California Dairy following Colostrum Management Training.
Published in:
Veterinary Medicine International, 2014, p. 1, doi. 10.1155/2014/698741
By:
- Williams, Deniece R.;
- Pithua, Patrick;
- Garcia, Angel;
- Champagne, John;
- Haines, Deborah M.;
- Aly, Sharif S.
Publication type:
Article
Components of a risk assessment tool for prevention and control of bovine respiratory disease in preweaned dairy calves.
Published in:
Animal Health Research Reviews, 2020, v. 21, n. 2, p. 153, doi. 10.1017/S1466252320000201
By:
- Aly, Sharif S.;
- Karle, Betsy M.;
- Williams, Deniece R.;
- Maier, Gabriele U.;
- Dubrovsky, Sasha
Publication type:
Article
Agreement between bovine respiratory disease scoring systems for pre-weaned dairy calves.
Published in:
Animal Health Research Reviews, 2014, v. 15, n. 2, p. 148, doi. 10.1017/S1466252314000164
By:
- Aly, Sharif S.;
- Love, William J.;
- Williams, Deniece R.;
- Lehenbauer, Terry W.;
- Van Eenennaam, Alison;
- Drake, Christiana;
- Kass, Philip H.;
- Farver, Thomas B.
Publication type:
Article
Antimicrobial Susceptibility in Respiratory Pathogens and Farm and Animal Variables in Weaned California Dairy Heifers: Logistic Regression and Bayesian Network Analyses.
Published in:
Antibiotics (2079-6382), 2024, v. 13, n. 1, p. 50, doi. 10.3390/antibiotics13010050
By:
- Morgan Bustamante, Brittany L.;
- Chigerwe, Munashe;
- Martínez-López, Beatriz;
- Aly, Sharif S.;
- McArthur, Gary;
- ElAshmawy, Wagdy R.;
- Fritz, Heather;
- Williams, Deniece R.;
- Wenz, John;
- Depenbrock, Sarah
Publication type:
Article
Effect of Group Housing of Preweaned Dairy Calves: Health and Fecal Commensal Antimicrobial Resistance Outcomes.
Published in:
Antibiotics (2079-6382), 2023, v. 12, n. 6, p. 1019, doi. 10.3390/antibiotics12061019
By:
- Breen, Martin J.;
- Williams, Deniece R.;
- Abdelfattah, Essam M.;
- Karle, Betsy M.;
- Byrne, Barbara A.;
- Lehenbauer, Terry W.;
- Aly, Sharif S.
Publication type:
Article
Effectiveness of Intramammary Antibiotics, Internal Teat Sealants, or Both at Dry-Off in Dairy Cows: Clinical Mastitis and Culling Outcomes.
Published in:
Antibiotics (2079-6382), 2022, v. 11, n. 7, p. 954, doi. 10.3390/antibiotics11070954
By:
- Aly, Sharif S.;
- Okello, Emmanuel;
- ElAshmawy, Wagdy R.;
- Williams, Deniece R.;
- Anderson, Randall J.;
- Rossitto, Paul;
- Tonooka, Karen;
- Glenn, Kathy;
- Karle, Betsy;
- Lehenbauer, Terry W.
Publication type:
Article
Factors Associated with Antimicrobial Stewardship Practices on California Dairies: One Year Post Senate Bill 27.
Published in:
Antibiotics (2079-6382), 2022, v. 11, n. 2, p. 165, doi. 10.3390/antibiotics11020165
By:
- Abdelfattah, Essam M.;
- Ekong, Pius S.;
- Okello, Emmanuel;
- Williams, Deniece R.;
- Karle, Betsy M.;
- Lehenbauer, Terry W.;
- Aly, Sharif S.
Publication type:
Article
Antibiotic Resistance Genes and Associated Phenotypes in Escherichia coli and Enterococcus from Cattle at Different Production Stages on a Dairy Farm in Central California.
Published in:
Antibiotics (2079-6382), 2021, v. 10, n. 9, p. 1042, doi. 10.3390/antibiotics10091042
By:
- Jeamsripong, Saharuetai;
- Li, Xunde;
- Aly, Sharif S.;
- Su, Zhengchang;
- Pereira, Richard V.;
- Atwill, Edward R.
Publication type:
Article
A randomized controlled trial on preweaning morbidity, growth and mortality in Holstein heifers fed a lacteal-derived colostrum replacer or pooled maternal colostrum.
Published in:
BMC Veterinary Research, 2013, v. 9, n. 1, p. 1, doi. 10.1186/1746-6148-9-168
By:
- Aly, Sharif S;
- Pithua, Patrick;
- Champagne, John D;
- Haines, Deborah M
Publication type:
Article
Stable fly activity is associated with dairy management practices and seasonal weather conditions.
Published in:
PLoS ONE, 2021, v. 16, n. 7, p. 1, doi. 10.1371/journal.pone.0253946
By:
- ElAshmawy, Wagdy R.;
- Abdelfattah, Essam M.;
- Williams, Deniece R.;
- Gerry, Alec C.;
- Rossow, Heidi A.;
- Lehenbauer, Terry W.;
- Aly, Sharif S.
Publication type:
Article
Estimating the Rates of Acquisition and loss of Resistance of Enterobacteriaceae to Antimicrobial Drugs in Pre-Weaned Dairy Calves.
Published in:
2021
By:
- Cella, Elisa;
- Okello, Emmanuel;
- Rossitto, Paul V.;
- Cenci-Goga, Beniamino T.;
- Grispoldi, Luca;
- Williams, Deniece R.;
- Sheedy, David B.;
- Pereira, Richard;
- Karle, Betsy M.;
- Lehenbauer, Terry W.;
- Aly, Sharif S.
Publication type:
Abstract
2019 Survey of Antimicrobial Drug Use and Stewardship Practices in Adult Cows on California Dairies: Post Senate Bill 27.
Published in:
Microorganisms, 2021, v. 9, n. 7, p. 1507, doi. 10.3390/microorganisms9071507
By:
- Abdelfattah, Essam M.;
- Ekong, Pius S.;
- Okello, Emmanuel;
- Williams, Deniece R.;
- Karle, Betsy M.;
- Rowe, Joan D.;
- Marshall, Edith S.;
- Lehenbauer, Terry W.;
- Aly, Sharif S.
Publication type:
Article
Effect of Antimicrobial Treatment on the Dynamics of Ceftiofur Resistance in Enterobacteriaceae from Adult California Dairy Cows.
Published in:
Microorganisms, 2021, v. 9, n. 4, p. 828, doi. 10.3390/microorganisms9040828
By:
- Sheedy, David B.;
- Okello, Emmanuel;
- Williams, Deniece R.;
- Precht, Katie;
- Cella, Elisa;
- Lehenbauer, Terry W.;
- Aly, Sharif S.
Publication type:
Article
Determination of neonatal serum immunoglobulin G concentrations associated with mortality during the first 4 months of life in dairy heifer calves.
Published in:
Journal of Dairy Research, 2015, v. 82, n. 4, p. 400, doi. 10.1017/S0022029915000503
By:
- Chigerwe, Munashe;
- Hagey, Jill V;
- Aly, Sharif S
Publication type:
Article
Whole-Genome Sequencing and Concordance Between Antimicrobial Susceptibility Genotypes and Phenotypes of Bacterial Isolates Associated with Bovine Respiratory Disease.
Published in:
G3: Genes | Genomes | Genetics, 2017, v. 7, n. 9, p. 3059, doi. 10.1534/g3.117.1137
By:
- Owen, Joseph R.;
- Noyes, Noelle;
- Young, Amy E.;
- Prince, Daniel J.;
- Blanchard, Patricia C.;
- Lehenbauer, Terry W.;
- Aly, Sharif S.;
- Davis, Jessica H.;
- O'Rourke, Sean M.;
- Abdo, Zaid;
- Belk, Keith;
- Miller, Michael R.;
- Morley, Paul;
- Van Eenennaam, Alison L.
Publication type:
Article
Correction: Risk factors affecting dairy cattle protective grouping behavior, commonly known as bunching, against Stomoxys calcitrans (L.) on California dairies.
Published in:
2020
By:
- El Ashmawy, Wagdy R.;
- Williams, Deniece R.;
- Gerry, Alec C.;
- Champagne, John D.;
- Lehenbauer, Terry W.;
- Aly, Sharif S.
Publication type:
Correction Notice
Risk factors affecting dairy cattle protective grouping behavior, commonly known as bunching, against Stomoxys calcitrans (L.) on California dairies.
Published in:
PLoS ONE, 2019, v. 14, n. 11, p. 1, doi. 10.1371/journal.pone.0224987
By:
- El Ashmawy, Wagdy R.;
- Williams, Deniece R.;
- Gerry, Alec C.;
- Champagne, John D.;
- Lehenbauer, Terry W.;
- Aly, Sharif S.
Publication type:
Article
Association of plasma haptoglobin concentration and other biomarkers with bovine respiratory disease status in pre-weaned dairy calves.
Published in:
Journal of Veterinary Diagnostic Investigation, 2019, v. 31, n. 1, p. 40, doi. 10.1177/1040638718807242
By:
- Moisá, Sonia J.;
- Aly, Sharif S.;
- Lehenbauer, Terry W.;
- Love, William J.;
- Rossitto, Paul V.;
- Van Eenennaam, Alison L.;
- Trombetta, Sophia C.;
- Bortoluzzi, Eduarda M.;
- Hulbert, Lindsey E.
Publication type:
Article
Cecal infarction in neonatal calves.
Published in:
Journal of Veterinary Diagnostic Investigation, 2017, v. 29, n. 2, p. 242, doi. 10.1177/1040638716688046
By:
- Adaska, John M.;
- Moeller, Robert B.;
- Blanchard, Patricia C.;
- Aly, Sharif S.
Publication type:
Article
Sensitivity and specificity of on-farm scoring systems and nasal culture to detect bovine respiratory disease complex in preweaned dairy calves.
Published in:
Journal of Veterinary Diagnostic Investigation, 2016, v. 28, n. 2, p. 119, doi. 10.1177/1040638715626204
By:
- Love, William J.;
- Lehenbauer, Terry W.;
- Van Eenennaam, Alison L.;
- Drake, Christiana M.;
- Kass, Philip H.;
- Farver, Thomas B.;
- Aly, Sharif S.
Publication type:
Article
Jejunal hematoma in cattle: a retrospective case analysis.
Published in:
2014
By:
- Adaska, John M.;
- Aly, Sharif S.;
- Moeller, Robert B.;
- Blanchard, Patricia C.;
- Anderson, Mark;
- Kinde, Hailu;
- Uzal, Francisco
Publication type:
Case Study
Cost-effectiveness of diagnostic strategies to identify Mycobacterium avium subspecies paratuberculosis super-shedder cows in a large dairy herd using antibody enzyme-linked immunosorbent assays, quantitative real-time polymerase chain reaction, and ...
Published in:
Journal of Veterinary Diagnostic Investigation, 2012, v. 24, n. 5, p. 821, doi. 10.1177/1040638712452107
By:
- Aly, Sharif S.;
- Anderson, Randall J.;
- Whitlock, Robert H.;
- Fyock, Terry L.;
- McAdams, Susan C.;
- Byrem, Todd M.;
- Jiang, Jiming;
- Adaska, John M.;
- Gardner, Ian A.
Publication type:
Article
Correlation between Herrold egg yolk medium culture and real-time quantitative polymerase chain reaction results for Mycobacterium avium subspecies paratuberculosis in pooled fecal and environmental samples.
Published in:
Journal of Veterinary Diagnostic Investigation, 2010, v. 22, n. 5, p. 677, doi. 10.1177/104063871002200501
By:
- Aly, Sharif S.;
- Mangold, Beverly L.;
- Whitlock, Robert H.;
- Sweeney, Raymond W.;
- Anderson, Randall J.;
- Jiang, Jiming;
- Schukken, Ynte H.;
- Hovingh, Ernest;
- Wolfgang, David;
- Van Kessel, Jo Ann S.;
- Karns, Jeffrey S.;
- Lombard, Jason E.;
- Smith, Julia M.;
- Gardner, Ian A.
Publication type:
Article
Dynamic changes in fecal bacterial microbiota of dairy cattle across the production line.
Published in:
BMC Microbiology, 2022, v. 22, n. 1, p. 1, doi. 10.1186/s12866-022-02549-3
By:
- Zhao, Lei;
- Li, Xunde;
- Atwill, Edward R.;
- Aly, Sharif S.;
- Williams, Deniece R.;
- Su, Zhengchang
Publication type:
Article
Dynamic changes in fecal bacterial microbiota of dairy cattle across the production line.
Published in:
BMC Microbiology, 2022, v. 22, n. 1, p. 1, doi. 10.1186/s12866-022-02549-3
By:
- Zhao, Lei;
- Li, Xunde;
- Atwill, Edward R.;
- Aly, Sharif S.;
- Williams, Deniece R.;
- Su, Zhengchang
Publication type:
Article
Quantification of antibiotic resistance genes and mobile genetic in dairy manure.
Published in:
PeerJ, 2021, p. 1, doi. 10.7717/peerj.12408
By:
- Yi Wang;
- Pandey, Pramod;
- Chiu, Colleen;
- Jeannotte, Richard;
- Kuppu, Sundaram;
- Zhang, Ruihong;
- Pereira, Richard;
- Weimer, Bart C.;
- Nitin, Nitin;
- Aly, Sharif S.
Publication type:
Article
Development of a multiplex qPCR assay for the simultaneous detection of Mycoplasma bovis, Mycoplasma species, and Acholeplasma laidlawii in milk.
Published in:
PeerJ, 2021, p. 1, doi. 10.7717/peerj.11881
By:
- Chauhan, Kanika;
- Aly, Sharif S.;
- Lehenbauer, Terry W.;
- Tonooka, Karen H.;
- Glenn, Kathy;
- Rossitto, Paul;
- Marco, Maria L.
Publication type:
Article
Dairy management practices associated with multi-drug resistant fecal commensals and Salmonella in cull cows: a machine learning approach.
Published in:
PeerJ, 2021, p. 1, doi. 10.7717/peerj.11732
By:
- Pandit, Pranav S.;
- Williams, Deniece R.;
- Rossitto, Paul;
- Adaska, John M.;
- Pereira, Richard;
- Lehenbauer, Terry W.;
- Byrne, Barbara A.;
- Xunde Li;
- Atwill, Edward R.;
- Aly, Sharif S.
Publication type:
Article
2018 Survey of factors associated with antimicrobial drug use and stewardship practices in adult cows on conventional California dairies: immediate post-Senate Bill 27 impact.
Published in:
PeerJ, 2021, p. 1, doi. 10.7717/peerj.11596
By:
- Ekong, Pius S.;
- Abdelfattah, Essam M.;
- Okello, Emmanuel;
- Williams, Deniece R.;
- Lehenbauer, Terry W.;
- Karle, Betsy M.;
- Rowe, Joan D.;
- Aly, Sharif S.
Publication type:
Article
2018 Survey of antimicrobial drug use and stewardship practices in adult cows on California dairies: post-Senate Bill 27.
Published in:
PeerJ, 2021, p. 1, doi. 10.7717/peerj.11515
By:
- Ekong, Pius S.;
- Abdelfattah, Essam M.;
- Okello, Emmanuel;
- Williams, Deniece R.;
- Lehenbauer, Terry W.;
- Karle, Betsy M.;
- Rowe, Joan D.;
- Marshall, Edith S.;
- Aly, Sharif S.
Publication type:
Article
Epidemiology of antimicrobial resistance (AMR) on California dairies: descriptive and cluster analyses of AMR phenotype of fecal commensal bacteria isolated from adult cows.
Published in:
PeerJ, 2021, p. 1, doi. 10.7717/peerj.11108
By:
- Abdelfattah, Essam M.;
- Ekong, Pius S.;
- Okello, Emmanuel;
- Chamchoy, Tapakorn;
- Karle, Betsy M.;
- Black, Randi A.;
- Sheedy, David;
- ElAshmawy, Wagdy R.;
- Williams, Deniece R.;
- Califano, Daniela;
- Durán Tovar, Luis Fernando;
- Ongom, Jonathan;
- Lehenbauer, Terry W.;
- Byrne, Barbara A.;
- Aly, Sharif S.
Publication type:
Article
Bayesian estimation of diagnostic accuracy of fecal culture and PCR-based tests for the detection of Salmonella enterica in California cull dairy cattle.
Published in:
PeerJ, 2020, p. 1, doi. 10.7717/peerj.8310
By:
- Adaska, John M.;
- Ekong, Pius S.;
- Clothier, Kristin A.;
- Williams, Deniece R.;
- Rossitto, Paul V.;
- Lehenbauer, Terry W.;
- Atwill, Edward R.;
- Xunde Li;
- Aly, Sharif S.
Publication type:
Article
Environmental sampling to assess the bioburden of Mycobacterium avium subspecies paratuberculosis in drylot pens on California dairies.
Published in:
PeerJ, 2019, p. 1, doi. 10.7717/peerj.8081
By:
- Chamchoy, Tapakorn;
- Williams, Deneice R.;
- Adaska, John M.;
- Anderson, Randall J.;
- Aly, Sharif S.
Publication type:
Article
Molecular epidemiology of coagulase-negative Staphylococcus species isolated at different lactation stages from dairy cattle in the United States.
Published in:
PeerJ, 2019, p. 1, doi. 10.7717/peerj.6749
By:
- Jenkins, Stephen N.;
- Okello, Emmanuel;
- Rossitto, Paul V.;
- Lehenbauer, Terry W.;
- Champagne, John;
- Penedo, Maria C. T.;
- Arruda, Andréia G.;
- Godden, Sandra;
- Rapnicki, Paul;
- Gorden, Patrick J.;
- Timms, Leo L.;
- Aly, Sharif S.
Publication type:
Article
Association between herd management practices and antimicrobial resistance in Salmonella spp. from cull dairy cattle in Central California.
Published in:
PeerJ, 2019, p. 1, doi. 10.7717/peerj.6546
By:
- Pereira, Richard;
- Williams, Deniece R.;
- Rossitto, Paul;
- Adaska, John;
- Okello, Emmanuel;
- Champagne, John;
- Lehenbauer, Terry W.;
- Xunde Li;
- Chase, Jennifer;
- Nguyen, Tran;
- Pires, Alda F. A.;
- Atwill, Edward R.;
- Aly, Sharif S.
Publication type:
Article
Modeling highly pathogenic avian influenza transmission in wild birds and poultry in West Bengal, India.
Published in:
Scientific Reports, 2013, p. 1, doi. 10.1038/srep02175
By:
- Pandit, Pranav S.;
- Bunn, David A.;
- Pande, Satish A.;
- Aly, Sharif S.
Publication type:
Article
Effectiveness of zinc supplementation on diarrhea and average daily gain in pre-weaned dairy calves: A double-blind, block-randomized, placebo-controlled clinical trial.
Published in:
PLoS ONE, 2019, v. 14, n. 7, p. 1, doi. 10.1371/journal.pone.0219321
By:
- Feldmann, Hillary R.;
- Williams, Deniece R.;
- Champagne, John D.;
- Lehenbauer, Terry W.;
- Aly, Sharif S.
Publication type:
Article
A nested compartmental model to assess the efficacy of paratuberculosis control measures on U.S. dairy farms.
Published in:
PLoS ONE, 2018, v. 13, n. 10, p. 1, doi. 10.1371/journal.pone.0203190
By:
- Konboon, Malinee;
- Bani-Yaghoub, Majid;
- Pithua, Patrick O.;
- Rhee, Noah;
- Aly, Sharif S.
Publication type:
Article
Management Practices of Bovine Mastitis and Milk Quality on Egyptian Dairies.
Published in:
Veterinary Sciences, 2023, v. 10, n. 10, p. 629, doi. 10.3390/vetsci10100629
By:
- Farag, Heba S.;
- Aly, Sharif S.;
- Fahim, Karima M.;
- Fayed, Adel A.;
- Abdelfattah, Essam M.;
- El-Sayed, Samah M.;
- Hegazy, Yamen M.;
- ElAshmawy, Wagdy R.
Publication type:
Article
Effectiveness of Intramammary Antibiotics, Internal Teat Sealants, or Both at Dry-Off in Dairy Cows: Milk Production and Somatic Cell Count Outcomes.
Published in:
Veterinary Sciences, 2022, v. 9, n. 10, p. N.PAG, doi. 10.3390/vetsci9100559
By:
- ElAshmawy, Wagdy R.;
- Okello, Emmanuel;
- Williams, Deniece R.;
- Anderson, Randall J.;
- Karle, Betsy;
- Lehenbauer, Terry W.;
- Aly, Sharif S.
Publication type:
Article
Impact of zinc supplementation on phenotypic antimicrobial resistance of fecal commensal bacteria from pre-weaned dairy calves.
Published in:
Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-54738-x
By:
- Lee, Katie Y.;
- Atwill, Edward R.;
- Li, Xunde;
- Feldmann, Hillary R.;
- Williams, Deniece R.;
- Weimer, Bart C.;
- Aly, Sharif S.
Publication type:
Article
Impact of zinc supplementation on phenotypic antimicrobial resistance of fecal commensal bacteria from pre-weaned dairy calves.
Published in:
Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-54738-x
By:
- Lee, Katie Y.;
- Atwill, Edward R.;
- Li, Xunde;
- Feldmann, Hillary R.;
- Williams, Deniece R.;
- Weimer, Bart C.;
- Aly, Sharif S.
Publication type:
Article

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