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Fusing microarray experiments with multivariate regression.
- Published in:
- Bioinformatics, 2005, v. 21, p. ii137, doi. 10.1093/bioinformatics/bti1123
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- Publication type:
- Article
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis.
- Published in:
- Bioinformatics, 2005, v. 21, n. 16, p. 3439, doi. 10.1093/bioinformatics/bti525
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- Publication type:
- Article
An open letter to the scientific journals.
- Published in:
- Bioinformatics, 2002, v. 18, n. 11, p. 1409, doi. 10.1093/bioinformatics/18.11.1409
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- Publication type:
- Article
Correlating gene promoters and expression in gene disruption experiments.
- Published in:
- Bioinformatics, 2002, v. 18, p. S172, doi. 10.1093/bioinformatics/18.suppl_2.S172
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- Publication type:
- Article
ON THE IMPORTANCE OF STANDARDISATION IN LIFE SCIENCES.
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- Bioinformatics, 2001, v. 17, n. 2, p. 113, doi. 10.1093/bioinformatics/17.2.113
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- Publication type:
- Article
Benchmarking strategies for cross-species integration of single-cell RNA sequencing data.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-41855-w
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- Publication type:
- Article
Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum.
- Published in:
- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-52
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- Publication type:
- Article
Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction.
- Published in:
- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S8-S2
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- Publication type:
- Article
Top-down standards will not serve systems biology.
- Published in:
- 2006
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- Publication type:
- Letter
Reuse of public genome-wide gene expression data.
- Published in:
- Nature Reviews Genetics, 2013, v. 14, n. 2, p. 89, doi. 10.1038/nrg3394
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- Publication type:
- Article
Standards for systems biology.
- Published in:
- Nature Reviews Genetics, 2006, v. 7, n. 8, p. 593, doi. 10.1038/nrg1922
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- Publication type:
- Article
Blood transcriptome profile induced by an efficacious vaccine formulated with salivary antigens from cattle ticks.
- Published in:
- NPJ Vaccines, 2019, v. 4, n. 1, p. 1, doi. 10.1038/s41541-019-0145-1
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- Publication type:
- Article
Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow.
- Published in:
- Nature Communications, 2016, v. 7, n. 6, p. 11778, doi. 10.1038/ncomms11778
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- Publication type:
- Article
The IronChip evaluation package: a package ofperl modules for robust analysis of custommicroarrays.
- Published in:
- 2010
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- Publication type:
- Product Review
Probabilistic retrieval and visualization of biologically relevant microarray experiments.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S13-P1
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- Publication type:
- Article
Visualization of large microarray experiments with space maps.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S13-O7
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- Publication type:
- Article
Using Deep Learning to Extrapolate Protein Expression Measurements.
- Published in:
- Proteomics, 2020, v. 20, n. 21/22, p. 1, doi. 10.1002/pmic.202000009
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- Publication type:
- Article
Dysregulation at multiple points of the kynurenine pathway is a ubiquitous feature of renal cancer: implications for tumour immune evasion.
- Published in:
- 2020
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- Publication type:
- journal article
Pol III binding in six mammals shows conservation among amino acid isotypes despite divergence among tRNA genes.
- Published in:
- Nature Genetics, 2011, v. 43, n. 10, p. 948, doi. 10.1038/ng.906
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- Publication type:
- Article
Periodic gene expression program of the fission yeast cell cycle.
- Published in:
- Nature Genetics, 2004, v. 36, n. 8, p. 809, doi. 10.1038/ng1377
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- Publication type:
- Article
The Fission Yeast Homeodomain Protein Yox1p Binds to MBF and Confines MBF-Dependent Cell-Cycle Transcription to G1-S via Negative Feedback.
- Published in:
- PLoS Genetics, 2009, v. 5, n. 8, p. 1, doi. 10.1371/journal.pgen.1000626
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- Publication type:
- Article
INTRODUCTION.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2009, v. 7, n. 2, p. v, doi. 10.1142/S0219720009004096
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- Publication type:
- Article
The BREW workshop series: a stimulating experience in PhD education.
- Published in:
- Briefings in Bioinformatics, 2008, v. 9, n. 3, p. 250, doi. 10.1093/bib/bbn002
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- Publication type:
- Article
Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories.
- Published in:
- Nature Biotechnology, 2013, v. 31, n. 11, p. 1015, doi. 10.1038/nbt.2702
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- Publication type:
- Article
A global map of human gene expression.
- Published in:
- Nature Biotechnology, 2010, v. 28, n. 4, p. 322, doi. 10.1038/nbt0410-322
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- Publication type:
- Article
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project.
- Published in:
- Nature Biotechnology, 2008, v. 26, n. 8, p. 889, doi. 10.1038/nbt.1411
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- Publication type:
- Article
Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE).
- Published in:
- Nature Biotechnology, 2008, v. 26, n. 3, p. 305, doi. 10.1038/nbt1391
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- Publication type:
- Article
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.
- Published in:
- Nature Biotechnology, 2007, v. 25, n. 10, p. 1127, doi. 10.1038/nbt1347
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- Publication type:
- Article
ArrayExpress service for reviewers/editors of DNA microarray papers.
- Published in:
- Nature Biotechnology, 2006, v. 24, n. 11, p. 1321, doi. 10.1038/nbt1106-1321
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- Publication type:
- Article
Wrestling with SUMO and bio-ontologies.
- Published in:
- 2006
- By:
- Publication type:
- Letter
Funding high-throughput data sharing.
- Published in:
- 2004
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- Publication type:
- Editorial
▪▪▪Report on EU–USA Workshop: How Systems Biology Can Advance Cancer Research (27 October 2008)
- Published in:
- 2009
- By:
- Publication type:
- Proceeding
PASSIM -- an open source software system for managing information in biomedical studies.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 1, doi. 10.1186/1471-2105-8-52
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- Publication type:
- Article
Prediction of Gene Expression in Embryonic Structures of Drosophila melanogaster.
- Published in:
- PLoS Computational Biology, 2007, v. 3, n. 7, p. e144, doi. 10.1371/journal.pcbi.0030144
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- Publication type:
- Article
Simulating structurally variable nuclear pore complexes for microscopy.
- Published in:
- Bioinformatics, 2023, v. 39, n. 10, p. 1, doi. 10.1093/bioinformatics/btad587
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- Publication type:
- Article
RNAget: an API to securely retrieve RNA quantifications.
- Published in:
- Bioinformatics, 2023, v. 39, n. 4, p. 1, doi. 10.1093/bioinformatics/btad126
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- Publication type:
- Article
RNA-Seq Gene Profiling - A Systematic Empirical Comparison.
- Published in:
- PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0107026
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- Publication type:
- Article
Tandem RNA Chimeras Contribute to Transcriptome Diversity in Human Population and Are Associated with Intronic Genetic Variants.
- Published in:
- PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0104567
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- Publication type:
- Article
Minimum information about a microarray experiment (MIAME)?toward standards for microarray data.
- Published in:
- Nature Genetics, 2001, v. 29, n. 4, p. 365, doi. 10.1038/ng1201-365
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- Publication type:
- Article
A public repository for DNA microarray-based gene expression data.
- Published in:
- 1999
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- Publication type:
- Abstract
Data mining and visualisation of microarray gene expression data.
- Published in:
- 1999
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- Publication type:
- Abstract
Discovery of putative transcription factor binding sites from microarray-based gene expression profiles.
- Published in:
- 1999
- By:
- Publication type:
- Abstract
Submission of Microarray Data to Public Repositories.
- Published in:
- PLoS Biology, 2004, v. 2, n. 9, p. 1276, doi. 10.1371/journal.pbio.0020317
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- Publication type:
- Article
Submission of Microarray Data to Public Repositories.
- Published in:
- PLoS Biology, 2004, v. 2, n. 8, p. 1, doi. 10.1371/journal.pbio.0020317
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- Publication type:
- Article
Gastric Microbiome Diversities in Gastric Cancer Patients from Europe and Asia Mimic the Human Population Structure and Are Partly Driven by Microbiome Quantitative Trait Loci.
- Published in:
- Microorganisms, 2020, v. 8, n. 8, p. 1196, doi. 10.3390/microorganisms8081196
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- Publication type:
- Article
A novel atlas of gene expression in human skeletal muscle reveals molecular changes associated with aging.
- Published in:
- Skeletal Muscle, 2015, v. 5, n. 1, p. 1, doi. 10.1186/s13395-015-0059-1
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- Publication type:
- Article
A novel atlas of gene expression in human skeletal muscle reveals molecular changes associated with aging.
- Published in:
- Skeletal Muscle, 2015, v. 5, p. 1, doi. 10.1186/s13395-015-0059-1
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- Publication type:
- Article
Dynamics of gene regulatory networks and their dependence on network topology and quantitative parameters – the case of phage λ.
- Published in:
- BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2909-z
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- Publication type:
- Article
One-stop shop for microarray data.
- Published in:
- Nature, 2000, v. 403, n. 6771, p. 699, doi. 10.1038/35001676
- By:
- Publication type:
- Article
Meta-analysis of COVID-19 single-cell studies confirms eight key immune responses.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-00121-z
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- Publication type:
- Article