Works by Alneberg, Johannes

Results: 14

DESMAN: a new tool for de novo extraction of strains from metagenomes.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1309-9

By:

Quince, Christopher;
Delmont, Tom O.;
Raguideau, Sébastien;
Alneberg, Johannes;
Darling, Aaron E.;
Collins, Gavin;
Eren, A. Murat

Publication type:

Article

Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes.

Published in:

Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-0856-x

By:

Alneberg, Johannes;
Bennke, Christin;
Beier, Sara;
Bunse, Carina;
Quince, Christopher;
Ininbergs, Karolina;
Riemann, Lasse;
Ekman, Martin;
Jürgens, Klaus;
Labrenz, Matthias;
Pinhassi, Jarone;
Andersson, Anders F.

Publication type:

Article

Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes.

Published in:

Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0550-0

By:

Alneberg, Johannes;
Karlsson, Christofer M. G.;
Divne, Anna-Maria;
Bergin, Claudia;
Homa, Felix;
Lindh, Markus V.;
Hugerth, Luisa W.;
Ettema, Thijs J. G.;
Bertilsson, Stefan;
Andersson, Anders F.;
Pinhassi, Jarone

Publication type:

Article

Machine Learning Predicts the Presence of 2,4,6-Trinitrotoluene in Sediments of a Baltic Sea Munitions Dumpsite Using Microbial Community Compositions.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.626048

By:

Janßen, René;
Beck, Aaron J.;
Werner, Johannes;
Dellwig, Olaf;
Alneberg, Johannes;
Kreikemeyer, Bernd;
Maser, Edmund;
Böttcher, Claus;
Achterberg, Eric P.;
Andersson, Anders F.;
Labrenz, Matthias

Publication type:

Article

Coupling biogeochemical process rates and metagenomic blueprints of coastal bacterial assemblages in the context of environmental change.

Published in:

Environmental Microbiology, 2018, v. 20, n. 8, p. 3083, doi. 10.1111/1462-2920.14371

By:

Markussen, Trine;
Happel, Elisabeth M.;
Teikari, Jonna E.;
Huchaiah, Vimala;
Alneberg, Johannes;
Andersson, Anders F.;
Sivonen, Kaarina;
Riemann, Lasse;
Middelboe, Mathias;
Kisand, Veljo

Publication type:

Article

Active anaerobic methane oxidation and sulfur disproportionation in the deep terrestrial subsurface.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2022, v. 16, n. 6, p. 1583, doi. 10.1038/s41396-022-01207-w

By:

Bell, Emma;
Lamminmäki, Tiina;
Alneberg, Johannes;
Qian, Chen;
Xiong, Weili;
Hettich, Robert L.;
Frutschi, Manon;
Bernier-Latmani, Rizlan

Publication type:

Article

Ecologically coherent population structure of uncultivated bacterioplankton.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2021, v. 15, n. 10, p. 3034, doi. 10.1038/s41396-021-00985-z

By:

Sjöqvist, Conny;
Delgado, Luis Fernando;
Alneberg, Johannes;
Andersson, Anders F.

Publication type:

Article

Active sulfur cycling in the terrestrial deep subsurface.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2020, v. 14, n. 5, p. 1260, doi. 10.1038/s41396-020-0602-x

By:

Bell, Emma;
Lamminmäki, Tiina;
Alneberg, Johannes;
Andersson, Anders F.;
Qian, Chen;
Xiong, Weili;
Hettich, Robert L.;
Frutschi, Manon;
Bernier-Latmani, Rizlan

Publication type:

Article

Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2017, v. 11, n. 11, p. 2538, doi. 10.1038/ismej.2017.108

By:

Svartström, Olov;
Alneberg, Johannes;
Terrapon, Nicolas;
Lombard, Vincent;
de Bruijn, Ino;
Malmsten, Jonas;
Dalin, Ann-Marie;
EL Muller, Emilie;
Shah, Pranjul;
Wilmes, Paul;
Henrissat, Bernard;
Aspeborg, Henrik;
Andersson, Anders F

Publication type:

Article

Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-29920-7

By:

Hu, Yue O. O.;
Ndegwa, Nelson;
Alneberg, Johannes;
Johansson, Sebastian;
Logue, Jürg Brendan;
Huss, Mikael;
Käller, Max;
Lundeberg, Joakim;
Fagerberg, Jens;
Andersson, Anders F.

Publication type:

Article

Metagenome-assembled genomes uncover a global brackish microbiome.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0834-7

By:

Hugerth, Luisa W.;
Larsson, John;
Alneberg, Johannes;
Lindh, Markus V.;
Legrand, Catherine;
Pinhassi, Jarone;
Andersson, Anders F.

Publication type:

Article

Binning metagenomic contigs by coverage and composition.

Published in:

Nature Methods, 2014, v. 11, n. 11, p. 1144, doi. 10.1038/nmeth.3103

By:

Alneberg, Johannes;
Bjarnason, Brynjar Smári;
de Bruijn, Ino;
Schirmer, Melanie;
Quick, Joshua;
Ijaz, Umer Z;
Lahti, Leo;
Loman, Nicholas J;
Andersson, Anders F;
Quince, Christopher

Publication type:

Article

Biogeochemical Cycling by a Low-Diversity Microbial Community in Deep Groundwater.

Published in:

Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02129

By:

Bell, Emma;
Lamminmäki, Tiina;
Alneberg, Johannes;
Andersson, Anders F.;
Qian, Chen;
Xiong, Weili;
Hettich, Robert L.;
Balmer, Louise;
Frutschi, Manon;
Sommer, Guillaume;
Bernier-Latmani, Rizlan

Publication type:

Article

The nf-core framework for community-curated bioinformatics pipelines.

Published in:

2020

By:

Ewels, Philip A.;
Peltzer, Alexander;
Fillinger, Sven;
Patel, Harshil;
Alneberg, Johannes;
Wilm, Andreas;
Garcia, Maxime Ulysse;
Di Tommaso, Paolo;
Nahnsen, Sven

Publication type:

Letter