Works by Allain, Frédéric H-T

Results: 64

A highly sensitive protein-RNA cross-linking mass spectrometry workflow with enhanced structural modeling potential Open Access.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 11, p. 1, doi. 10.1093/nar/gkaf523

By:

Sarnowski, Chris P;
Knörlein, Anna;
de Vries, Tebbe;
Götze, Michael;
Beusch, Irene;
Aebersold, Ruedi;
Allain, Frédéric H-T;
Hall, Jonathan;
Leitner, Alexander

Publication type:

Article

Structural basis for −10 promoter element melting by environmentally induced sigma factors.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 3, p. 269, doi. 10.1038/nsmb.2777

By:

Campagne, Sébastien;
Marsh, May E;
Capitani, Guido;
Vorholt, Julia A;
Allain, Frédéric H-T

Publication type:

Article

Molecular basis of UG-rich RNA recognition by the human splicing factor TDP-43.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 12, p. 1443, doi. 10.1038/nsmb.2698

By:

Lukavsky, Peter J;
Daujotyte, Dalia;
Tollervey, James R;
Ule, Jernej;
Stuani, Cristiana;
Buratti, Emanuele;
Baralle, Francisco E;
Damberger, Fred F;
Allain, Frédéric H-T

Publication type:

Article

Structural basis of pre-let-7 miRNA recognition by the zinc knuckles of pluripotency factor Lin28.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 1, p. 84, doi. 10.1038/nsmb.2202

By:

Loughlin, Fionna E;
Gebert, Luca F R;
Towbin, Harry;
Brunschweiger, Andreas;
Hall, Jonathan;
Allain, Frédéric H-T

Publication type:

Article

Molecular basis of purine-rich RNA recognition by the human SR-like protein Tra2-β1.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 4, p. 443, doi. 10.1038/nsmb.2001

By:

Cléry, Antoine;
Jayne, Sandrine;
Benderska, Natalya;
Dominguez, Cyril;
Stamm, Stefan;
Allain, Frédéric H.-T.

Publication type:

Article

Structural basis of G-tract recognition and encaging by hnRNP F quasi-RRMs.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 7, p. 853, doi. 10.1038/nsmb.1814

By:

Dominguez, Cyril;
Fisette, Jean-François;
Chabot, Benoit;
Allain, Frédéric H.-T.

Publication type:

Article

Molecular basis of messenger RNA recognition by the specific bacterial repressing clamp RsmA/CsrA.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 9, p. 807, doi. 10.1038/nsmb1285

By:

Schubert, Mario;
Lapouge, Karine;
Duss, Olivier;
Oberstrass, Florian C.;
Jelesarov, Ilian;
Haas, Dieter;
Allain, Frédéric H.-T.

Publication type:

Article

Shape-specific recognition in the structure of the Vts1p SAM domain with RNA.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 2, p. 160, doi. 10.1038/nsmb1038

By:

Oberstrass, Florian C.;
Lee, Albert;
Stefl, Richard;
Janis, Michael;
Chanfreau, Guillaume;
Allain, Frédéric H. -T.

Publication type:

Article

Phosphoglucan Phosphatase Like Sex Four2 Dephosphorylates Starch at the C3-Position in Arabidopsis.

Published in:

Plant Cell, 2011, v. 23, n. 11, p. 4096, doi. 10.1105/tpc.111.092155

By:

Santelia, Diana;
Kötting, Oliver;
Seung, David;
Schubert, Mario;
Thalmann, Matthias;
Bischof, Sylvain;
Meekins, David A.;
Lutz, Andy;
Patron, Nicola;
Gentry, Matthew S.;
Allain, Frédéric H.-T.;
Zeeman, Samuel C.

Publication type:

Article

Plasticity of the β-Trefoil Protein Fold in the Recognition and Control of Invertebrate Predators and Parasites by a Fungal Defence System.

Published in:

PLoS Pathogens, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.ppat.1002706

By:

Schubert, Mario;
Bleuler-Martinez, Silvia;
Butschi, Alex;
Wälti, Martin A.;
Egloff, Pascal;
Stutz, Katrin;
Shi Yan;
Wilson, Iain B. H.;
Hengartner, Michael O.;
Aebi, Markus;
Allain, Frédéric H.-T.;
Künzler, Markus

Publication type:

Article

A Secondary Structural Element in a Wide Range of Fucosylated Glycoepitopes.

Published in:

Chemistry - A European Journal, 2017, v. 23, n. 48, p. 11598, doi. 10.1002/chem.201701866

By:

Aeschbacher, Thomas;
Zierke, Mirko;
Smieško, Martin;
Collot, Mayeul;
Mallet, Jean ‐ Maurice;
Ernst, Beat;
Allain, Frédéric H. ‐ T.;
Schubert, Mario

Publication type:

Article

Nucleotide-amino acid π-stacking interactions initiate photo cross-linking in RNA-protein complexes.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30284-w

By:

Knörlein, Anna;
Sarnowski, Chris P.;
de Vries, Tebbe;
Stoltz, Moritz;
Götze, Michael;
Aebersold, Ruedi;
Allain, Frédéric H.-T.;
Leitner, Alexander;
Hall, Jonathan

Publication type:

Article

Exon‐independent recruitment of SRSF1 is mediated by U1 snRNP stem‐loop 3.

Published in:

EMBO Journal, 2022, v. 41, n. 1, p. 1, doi. 10.15252/embj.2021107640

By:

Jobbins, Andrew M;
Campagne, Sébastien;
Weinmeister, Robert;
Lucas, Christian M;
Gosliga, Alison R;
Clery, Antoine;
Chen, Li;
Eperon, Lucy P;
Hodson, Mark J;
Hudson, Andrew J;
Allain, Frédéric H T;
Eperon, Ian C

Publication type:

Article

Segmental isotope labelling and solid-state NMR of a 12 × 59 kDa motor protein: identification of structural variability.

Published in:

Journal of Biomolecular NMR, 2018, v. 71, n. 4, p. 237, doi. 10.1007/s10858-018-0196-z

By:

Wiegand, Thomas;
Cadalbert, Riccardo;
von Schroetter, Christine;
Allain, Frédéric H.-T.;
Meier, Beat H.

Publication type:

Article

Gac/Rsm signal transduction pathway of γ-proteobacteria: from RNA recognition to regulation of social behaviour.

Published in:

Molecular Microbiology, 2008, v. 67, n. 2, p. 241, doi. 10.1111/j.1365-2958.2007.06042.x

By:

Lapouge, Karine;
Schubert, Mario;
Allain, Frédéric H.-T.;
Haas, Dieter

Publication type:

Article

The solution structure of Dead End bound to AU-rich RNA reveals an unusual mode of tandem RRM-RNA recognition required for mRNA regulation.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33552-x

By:

Duszczyk, Malgorzata M.;
Wischnewski, Harry;
Kazeeva, Tamara;
Arora, Rajika;
Loughlin, Fionna E.;
von Schroetter, Christine;
Pradère, Ugo;
Hall, Jonathan;
Ciaudo, Constance;
Allain, Frédéric H.-T.

Publication type:

Article

Back Cover: Elongated Bacterial Pili as a Versatile Alignment Medium for NMR Spectroscopy (Angew. Chem. Int. Ed. 37/2023).

Published in:

Angewandte Chemie International Edition, 2023, v. 62, n. 37, p. 1, doi. 10.1002/anie.202308984

By:

Nouri, Sirine;
Boudet, Julien;
Dreher‐Teo, Hiang;
Allain, Frédéric H.‐T.;
Glockshuber, Rudi;
Salmon, Loïc;
Giese, Christoph

Publication type:

Article

Elongated Bacterial Pili as a Versatile Alignment Medium for NMR Spectroscopy.

Published in:

Angewandte Chemie International Edition, 2023, v. 62, n. 37, p. 1, doi. 10.1002/anie.202305120

By:

Nouri, Sirine;
Boudet, Julien;
Dreher‐Teo, Hiang;
Allain, Frédéric H.‐T.;
Glockshuber, Rudi;
Salmon, Loïc;
Giese, Christoph

Publication type:

Article

Rücktitelbild: Elongated Bacterial Pili as a Versatile Alignment Medium for NMR Spectroscopy (Angew. Chem. 37/2023).

Published in:

Angewandte Chemie, 2023, v. 135, n. 37, p. 1, doi. 10.1002/ange.202308984

By:

Nouri, Sirine;
Boudet, Julien;
Dreher‐Teo, Hiang;
Allain, Frédéric H.‐T.;
Glockshuber, Rudi;
Salmon, Loïc;
Giese, Christoph

Publication type:

Article

Elongated Bacterial Pili as a Versatile Alignment Medium for NMR Spectroscopy.

Published in:

Angewandte Chemie, 2023, v. 135, n. 37, p. 1, doi. 10.1002/ange.202305120

By:

Nouri, Sirine;
Boudet, Julien;
Dreher‐Teo, Hiang;
Allain, Frédéric H.‐T.;
Glockshuber, Rudi;
Salmon, Loïc;
Giese, Christoph

Publication type:

Article

The testis-specific human protein RBMY recognizes RNA through a novel mode of interaction.

Published in:

EMBO Reports, 2007, v. 8, n. 4, p. 372, doi. 10.1038/sj.embor.7400910

By:

Skrisovska, Lenka;
Bourgeois, Cyril F;
Stefl, Richard;
Grellscheid, Sushma-Nagaraja;
Kister, Liliane;
Wenter, Philipp;
Elliott, David J;
Stevenin, James;
Allain, Frédéric H-T

Publication type:

Article

Structure of SRSF1 RRM1 bound to RNA reveals an unexpected bimodal mode of interaction and explains its involvement in SMN1 exon7 splicing.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-20481-w

By:

Cléry, Antoine;
Krepl, Miroslav;
Nguyen, Cristina K. X.;
Moursy, Ahmed;
Jorjani, Hadi;
Katsantoni, Maria;
Okoniewski, Michal;
Mittal, Nitish;
Zavolan, Mihaela;
Sponer, Jiri;
Allain, Frédéric H.-T.

Publication type:

Article

Aberrant interaction of FUS with the U1 snRNA provides a molecular mechanism of FUS induced amyotrophic lateral sclerosis.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-20191-3

By:

Jutzi, Daniel;
Campagne, Sébastien;
Schmidt, Ralf;
Reber, Stefan;
Mechtersheimer, Jonas;
Gypas, Foivos;
Schweingruber, Christoph;
Colombo, Martino;
von Schroetter, Christine;
Loughlin, Fionna E.;
Devoy, Anny;
Hedlund, Eva;
Zavolan, Mihaela;
Allain, Frédéric H.-T.;
Ruepp, Marc-David

Publication type:

Article

Structural basis of the RNA-binding specificity of human U1A protein.

Published in:

EMBO Journal, 1997, v. 16, n. 18, p. 5764, doi. 10.1093/emboj/16.18.5764

By:

Allain, Frédéric H.-T.;
Howe, Peter W. A.;
Neuhaus, David;
Varani, Gabriele

Publication type:

Article

How a rotavirus hijacks the human protein synthesis machinery.

Published in:

Nature Structural Biology, 2002, v. 9, n. 3, p. 158, doi. 10.1038/nsb0302-158

By:

Varani, Gabriele;
Allain, Frédéric H.-T.

Publication type:

Article

Solution structure of the loop B domain from the hairpin ribozyme.

Published in:

Nature Structural Biology, 1999, v. 6, n. 3, p. 212

By:

Butcher, Samuel E.;
Allain, Frédéric H.-T.;
Feigon, Juli

Publication type:

Article

A distinct structural region of the prokaryotic ubiquitin-like protein (Pup) is recognized by the N-terminal domain of the proteasomal ATPase Mpa

Published in:

FEBS Letters, 2009, v. 583, n. 19, p. 3151, doi. 10.1016/j.febslet.2009.09.020

By:

Sutter, Markus;
Striebel, Frank;
Damberger, Fred F.;
Allain, Frédéric H.-T.;
Weber-Ban, Eilika

Publication type:

Article

RNA‐PROTACs: Degraders of RNA‐Binding Proteins.

Published in:

Angewandte Chemie, 2021, v. 133, n. 6, p. 3200, doi. 10.1002/ange.202012330

By:

Ghidini, Alice;
Cléry, Antoine;
Halloy, François;
Allain, Frédéric H. T.;
Hall, Jonathan

Publication type:

Article

N-terminal domain of polypyrimidine-tract binding protein is a dynamic folding platform for adaptive RNA recognition.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10683, doi. 10.1093/nar/gkae713

By:

Damberger, Fred F;
Krepl, Miroslav;
Arora, Rajika;
Beusch, Irene;
Maris, Christophe;
Dorn, Georg;
Šponer, Jiří;
Ravindranathan, Sapna;
Allain, Frédéric H-T

Publication type:

Article

The diversity of splicing modifiers acting on A<sub>-1</sub> bulged 5′-splice sites reveals rules for rational drug design.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 8, p. 4124, doi. 10.1093/nar/gkae201

By:

Malard, Florian;
Wolter, Antje C;
Marquevielle, Julien;
Morvan, Estelle;
Ecoutin, Agathe;
Rüdisser, Simon H;
Allain, Frédéric H T;
Campagne, Sebastien

Publication type:

Article

An in vitro reconstituted U1 snRNP allows the study of the disordered regions of the particle and the interactions with proteins and ligands.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. e63, doi. 10.1093/nar/gkab135

By:

Campagne, Sébastien;
de Vries, Tebbe;
Malard, Florian;
Afanasyev, Pavel;
Dorn, Georg;
Dedic, Emil;
Kohlbrecher, Joachim;
Boehringer, Daniel;
Cléry, Antoine;
Allain, Frédéric H-T

Publication type:

Article

A transient α-helix in the N-terminal RNA recognition motif of polypyrimidine tract binding protein senses RNA secondary structure.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 8, p. 4521, doi. 10.1093/nar/gkaa155

By:

Maris, Christophe;
Jayne, Sandrine;
Damberger, Fred F.;
Beusch, Irene;
Dorn, Georg;
Ravindranathan, Sapna;
Allain, Frédéric H-T

Publication type:

Article

SAM68 interaction with U1A modulates U1 snRNP recruitment and regulates mTor pre-mRNA splicing.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 8, p. 4181, doi. 10.1093/nar/gkz099

By:

Subramania, Suryasree;
Gagné, Laurence M;
Campagne, Sébastien;
Fort, Victoire;
O'Sullivan, Julia;
Mocaer, Karel;
Feldmüller, Miki;
Masson, Jean-Yves;
Allain, Frédéric H T;
Hussein, Samer M;
Huot, Marc-Étienne

Publication type:

Article

Aromatic side-chain conformational switch on the surface of the RNA Recognition Motif enables RNA discrimination.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00631-3

By:

dit Konté, Nana Diarra;
Krepl, Miroslav;
Damberger, Fred F.;
Ripin, Nina;
Duss, Olivier;
Šponer, Jiří;
Allain, Frédéric H.-T.

Publication type:

Article

Functional and dynamic polymerization of the ALSlinked protein TDP-43 antagonizes its pathologic aggregation.

Published in:

Nature Communications, 2017, v. 8, n. 6, p. 1, doi. 10.1038/s41467-017-00062-0

By:

Afroz, Tariq;
Hock, Eva-Maria;
Ernst, Patrick;
Foglieni, Chiara;
Jambeau, Melanie;
Gilhespy, Larissa A. B.;
Laferriere, Florent;
Maniecka, Zuzanna;
Plückthun, Andreas;
Mittl, Peer;
Paganetti, Paolo;
Allain, Frédéric H. T.;
Polymenidou, Magdalini

Publication type:

Article

EPR-aided approach for solution structure determination of large RNAs or protein-RNA complexes.

Published in:

Nature Communications, 2014, v. 5, n. 5, p. 3669, doi. 10.1038/ncomms4669

By:

Duss, Olivier;
Yulikov, Maxim;
Jeschke, Gunnar;
Allain, Frédéric H.-T.

Publication type:

Article

The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression.

Published in:

FEBS Journal, 2005, v. 272, n. 9, p. 2118, doi. 10.1111/j.1742-4658.2005.04653.x

By:

Maris, Christophe;
Dominguez, Cyril;
Allain, Frédéric H.-T.

Publication type:

Article

RNA sequence- and shape-dependent recognition by proteins in the ribonucleoprotein particle.

Published in:

EMBO Reports, 2005, v. 6, n. 1, p. 33, doi. 10.1038/sj.embor.7400325

By:

Stefl, Richard;
Skrisovska, Lenka;
Allain, Frédéric H.-T.

Publication type:

Article

Distinct G protein-coupled receptor phosphorylation motifs modulate arrestin affinity and activation and global conformation.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-09204-y

By:

Mayer, Daniel;
Damberger, Fred F.;
Samarasimhareddy, Mamidi;
Feldmueller, Miki;
Vuckovic, Ziva;
Flock, Tilman;
Bauer, Brian;
Mutt, Eshita;
Zosel, Franziska;
Allain, Frédéric H. T.;
Standfuss, Jörg;
Schertler, Gebhard F. X.;
Deupi, Xavier;
Sommer, Martha E.;
Hurevich, Mattan;
Friedler, Assaf;
Veprintsev, Dmitry B.

Publication type:

Article

RNA‐PROTACs: Degraders of RNA‐Binding Proteins.

Published in:

Angewandte Chemie International Edition, 2021, v. 60, n. 6, p. 3163, doi. 10.1002/anie.202012330

By:

Ghidini, Alice;
Cléry, Antoine;
Halloy, François;
Allain, Frédéric H. T.;
Hall, Jonathan

Publication type:

Article

Prokaryotic ubiquitin-like protein remains intrinsically disordered when covalently attached to proteasomal target proteins.

Published in:

BMC Structural Biology, 2017, p. 1, doi. 10.1186/s12900-017-0072-1

By:

Barandun, Jonas;
Damberger, Fred F.;
Delley, Cyrille L.;
Laederach, Juerg;
Allain, Frédéric H. T.;
Weber-Ban, Eilika

Publication type:

Article

RNA recognition by Npl3p reveals U2 snRNA-binding compatible with a chaperone role during splicing.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42962-4

By:

Moursy, Ahmed;
Cléry, Antoine;
Gerhardy, Stefan;
Betz, Katharina M.;
Rao, Sanjana;
Mazur, Jarosław;
Campagne, Sébastien;
Beusch, Irene;
Duszczyk, Malgorzata M.;
Robinson, Mark D.;
Panse, Vikram Govind;
Allain, Frédéric H.-T.

Publication type:

Article

Amino Acid-Selective Segmental Isotope Labeling of Multidomain Proteins for Structural Biology.

Published in:

ChemBioChem, 2013, v. 14, n. 4, p. 457, doi. 10.1002/cbic.201200732

By:

Michel, Erich;
Skrisovska, Lenka;
Wüthrich, Kurt;
Allain, Frédéric H.‐T.

Publication type:

Article

Molecular biology: RNA modification does a regulatory two-step.

Published in:

Nature, 2015, v. 518, n. 7540, p. 492, doi. 10.1038/518492a

By:

Theler, Dominik;
Allain, Frédéric H.-T.

Publication type:

Article

The 100-protein NMR spectra dataset: A resource for biomolecular NMR data analysis.

Published in:

Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-023-02879-5

By:

Klukowski, Piotr;
Damberger, Fred F.;
Allain, Frédéric H.-T.;
Iwai, Hideo;
Kadavath, Harindranath;
Ramelot, Theresa A.;
Montelione, Gaetano T.;
Riek, Roland;
Güntert, Peter

Publication type:

Article

Modularity and determinants of a (bi-) polarization control system from free-living and obligate intracellular bacteria.

Published in:

eLife, 2016, p. 1, doi. 10.7554/eLife.20640

By:

Bergé, Matthieu;
Campagne, Sébastien;
Mignolet, Johann;
Holden, Seamus;
Théraulaz, Laurence;
Manley, Suliana;
Allain, Frédéric H-T;
Viollier, Patrick H.

Publication type:

Article

Structural study of the Fox-1 RRM protein hydration reveals a role for key water molecules in RRM-RNA recognition.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 13, p. 8046, doi. 10.1093/nar/gkx418

By:

Krepl, Miroslav;
Blatter, Markus;
Cléry, Antoine;
Damberger, Fred F.;
Allain, Frédéric H. T.;
Sponer, Jiri

Publication type:

Article

Comparative analyses of the thermodynamic RNA binding signatures of different types of RNA recognition motifs.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 6037, doi. 10.1093/nar/gkx136

By:

Samatanga, Brighton;
Cléry, Antoine;
Barraud, Pierre;
Allain, Frédéric H.-T.;
Jelesarov, Ilian

Publication type:

Article

Solution structure of the YTH domain in complex with N6-methyladenosine RNA: a reader of methylated RNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 22, p. 13911, doi. 10.1093/nar/gku1116

By:

Theler, Dominik;
Dominguez, Cyril;
Blatter, Markus;
Boudet, Julien;
Allain, Frédéric H.-T.

Publication type:

Article

Structural and functional implications of the QUA2 domain on RNA recognition by GLD-1.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 8092, doi. 10.1093/nar/gku445

By:

Daubner, Gerrit M.;
Brümmer, Anneke;
Tocchini, Cristina;
Gerhardy, Stefan;
Ciosk, Rafal;
Zavolan, Mihaela;
Allain, Frédéric H.-T.

Publication type:

Article