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The Parkinson's phenome—traits associated with Parkinson's disease in a broadly phenotyped cohort.
Published in:
NPJ Parkinson's Disease, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1038/s41531-019-0077-5
By:
- Heilbron, Karl;
- Noyce, Alastair J.;
- Fontanillas, Pierre;
- Alipanahi, Babak;
- Nalls, Mike A.;
- Cannon, Paul
Publication type:
Article
The genetic architecture of pneumonia susceptibility implicates mucin biology and a relationship with psychiatric illness.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31473-3
By:
- Reay, William R.;
- Geaghan, Michael P.;
- 23andMe Research Team;
- Agee, Michelle;
- Alipanahi, Babak;
- Bell, Robert K.;
- Bryc, Katarzyna;
- Elson, Sarah L.;
- Fontanillas, Pierre;
- Furlotte, Nicholas A.;
- Hicks, Barry;
- Hinds, David A.;
- Huber, Karen E.;
- Jewett, Ethan M.;
- Jiang, Yunxuan;
- Kleinman, Aaron;
- Lin, Keng-Han;
- Litterman, Nadia K.;
- McCreight, Jey C.;
- McIntyre, Matthew H.
Publication type:
Article
Fox Insight collects online, longitudinal patient-reported outcomes and genetic data on Parkinson's disease.
Published in:
Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0401-2
By:
- Smolensky, Luba;
- Amondikar, Ninad;
- Crawford, Karen;
- Neu, Scott;
- Kopil, Catherine M.;
- Daeschler, Margaret;
- Riley, Lindsey;
- 23andMe Research Team;
- Agee, Michelle;
- Alipanahi, Babak;
- Auton, Adam;
- Bell, Robert K.;
- Bryc, Katarzyna;
- Cannon, Paul;
- Clarke, Sarah;
- Elson, Sarah L.;
- Fonseca, Peter;
- Fontanillas, Pierre;
- Furlotte, Nicholas A.;
- Hicks, Barry
Publication type:
Article
Genome-wide association studies of antidepressant class response and treatment-resistant depression.
Published in:
Translational Psychiatry, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41398-020-01035-6
By:
- Li, Qingqin S.;
- Tian, Chao;
- Hinds, David;
- 23andMe Research Team;
- Agee, Michelle;
- Alipanahi, Babak;
- Auton, Adam;
- Bell, Robert K.;
- Bryc, Katarzyna;
- Elson, Sarah L.;
- Fontanillas, Pierre;
- Furlotte, Nicholas A.;
- Huber, Karen E.;
- Kleinman, Aaron;
- Litterman, Nadia K.;
- McIntyre, Matthew H.;
- Mountain, Joanna L.;
- Noblin, Elizabeth S.;
- Northover, Carrie A. M.;
- Pitts, Steven J.
Publication type:
Article
DeepNull models non-linear covariate effects to improve phenotypic prediction and association power.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-021-27930-0
By:
- McCaw, Zachary R.;
- Colthurst, Thomas;
- Yun, Taedong;
- Furlotte, Nicholas A.;
- Carroll, Andrew;
- Alipanahi, Babak;
- McLean, Cory Y.;
- Hormozdiari, Farhad
Publication type:
Article
Incorporating functional priors improves polygenic prediction accuracy in UK Biobank and 23andMe data sets.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25171-9
By:
- Márquez-Luna, Carla;
- Gazal, Steven;
- Loh, Po-Ru;
- Kim, Samuel S.;
- Furlotte, Nicholas;
- Auton, Adam;
- 23andMe Research Team;
- Agee, Michelle;
- Alipanahi, Babak;
- Bell, Robert K.;
- Bryc, Katarzyna;
- Elson, Sarah L.;
- Fontanillas, Pierre;
- Hinds, David A.;
- McCreight, Jey C.;
- Huber, Karen E.;
- Kleinman, Aaron;
- Litterman, Nadia K.;
- McIntyre, Matthew H.;
- Mountain, Joanna L.
Publication type:
Article
Author Correction: Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.
Published in:
2021
By:
- Howard, David M.;
- Adams, Mark J.;
- Shirali, Masoud;
- Clarke, Toni-Kim;
- Marioni, Riccardo E.;
- Davies, Gail;
- Coleman, Jonathan R. I.;
- Alloza, Clara;
- Shen, Xueyi;
- Barbu, Miruna C.;
- Wigmore, Eleanor M.;
- Gibson, Jude;
- 23andMe Research Team;
- Agee, Michelle;
- Alipanahi, Babak;
- Auton, Adam;
- Bell, Robert K.;
- Bryc, Katarzyna;
- Elson, Sarah L.;
- Fontanillas, Pierre
Publication type:
Correction Notice
Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning.
Published in:
Nature Biotechnology, 2015, v. 33, n. 8, p. 831, doi. 10.1038/nbt.3300
By:
- Alipanahi, Babak;
- Delong, Andrew;
- Weirauch, Matthew T;
- Frey, Brendan J
Publication type:
Article
Network cleanup.
Published in:
Nature Biotechnology, 2013, v. 31, n. 8, p. 714, doi. 10.1038/nbt.2657
By:
- Alipanahi, Babak;
- Frey, Brendan J
Publication type:
Article
Brain-expressed exons under purifying selection are enriched for de novo mutations in autism spectrum disorder.
Published in:
Nature Genetics, 2014, v. 46, n. 7, p. 742, doi. 10.1038/ng.2980
By:
- Uddin, Mohammed;
- Tammimies, Kristiina;
- Pellecchia, Giovanna;
- Alipanahi, Babak;
- Hu, Pingzhao;
- Wang, Zhuozhi;
- Pinto, Dalila;
- Lau, Lynette;
- Nalpathamkalam, Thomas;
- Marshall, Christian R;
- Blencowe, Benjamin J;
- Frey, Brendan J;
- Merico, Daniele;
- Yuen, Ryan K C;
- Scherer, Stephen W
Publication type:
Article
Does conservation account for splicing patterns?
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3121-4
By:
- Wainberg, Michael;
- Alipanahi, Babak;
- Frey, Brendan
Publication type:
Article
Correspondence between cerebral glucose metabolism and BOLD reveals relative power and cost in human brain.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08546-x
By:
- Shokri-Kojori, Ehsan;
- Tomasi, Dardo;
- Alipanahi, Babak;
- Wiers, Corinde E.;
- Wang, Gene-Jack;
- Volkow, Nora D.
Publication type:
Article
Author Correction: Genome-wide association study of knee pain identifies associations with GDF5 and COL27A1 in UK Biobank.
Published in:
2020
By:
- Meng, Weihua;
- Adams, Mark J.;
- Palmer, Colin N. A.;
- The 23andMe Research Team;
- Agee, Michelle;
- Alipanahi, Babak;
- Bell, Robert K.;
- Bryc, Katarzyna;
- Elson, Sarah L.;
- Fontanillas, Pierre;
- Furlotte, Nicholas A.;
- Hicks, Barry;
- Hinds, David A.;
- Huber, Karen E.;
- Jewett, Ethan M.;
- Jiang, Yunxuan;
- Kleinman, Aaron;
- Lin, Keng-Han;
- Litterman, Nadia K.;
- McCreight, Jennifer C.
Publication type:
Correction Notice
Whole-Genome Sequencing Suggests Schizophrenia Risk Mechanisms in Humans with 22q11.2 Deletion Syndrome.
Published in:
G3: Genes | Genomes | Genetics, 2015, v. 5, n. 11, p. 2453, doi. 10.1534/g3.115.021345
By:
- Merico, Daniele;
- Zarrei, Mehdi;
- Costain, Gregory;
- Ogura, Lucas;
- Alipanahi, Babak;
- Gazzellone, Matthew J.;
- Butcher, Nancy J.;
- Thiruvahindrapuram, Bhooma;
- Nalpathamkalam, Thomas;
- Chow, Eva W. C.;
- Andrade, Danielle M.;
- Frey, Brendan J.;
- Marshall, Christian R.;
- Scherer, Stephen W.;
- Bassett, Anne S.
Publication type:
Article
Protein Structure Idealization: How accurately is it possible to model protein structures with dihedral angles?
Published in:
Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-5
By:
- Xuefeng Cui;
- Shuai Cheng Li;
- Dongbo Bu;
- Alipanahi, Babak;
- Ming Li
Publication type:
Article
Genomewide Association Studies of LRRK2 Modifiers of Parkinson's Disease.
Published in:
2021
By:
- Lai, Dongbing;
- Alipanahi, Babak;
- Fontanillas, Pierre;
- Schwantes‐An, Tae‐Hwi;
- Aasly, Jan;
- Alcalay, Roy N.;
- Beecham, Gary W.;
- Berg, Daniela;
- Bressman, Susan;
- Brice, Alexis;
- Brockman, Kathrin;
- Clark, Lorraine;
- Cookson, Mark;
- Das, Sayantan;
- Van Deerlin, Vivianna;
- Follett, Jordan;
- Farrer, Matthew J.;
- Trinh, Joanne;
- Gasser, Thomas;
- Goldwurm, Stefano
Publication type:
journal article
Correction to: Overlapping genetic architecture between Parkinson disease and melanoma.
Published in:
2020
By:
- Dube, Umber;
- Ibanez, Laura;
- Budde, John P.;
- Benitez, Bruno A.;
- Davis, Albert A.;
- Harari, Oscar;
- Iles, Mark M.;
- Law, Matthew H.;
- Brown, Kevin M.;
- 23andMe Research Team;
- Agee, Michelle;
- Alipanahi, Babak;
- Auton, Adam;
- Bell, Robert K.;
- Bryc, Katarzyna;
- Elson, Sarah L.;
- Fontanillas, Pierre;
- Furlotte, Nicholas A.;
- Hinds, David A.;
- Huber, Karen E.
Publication type:
Correction Notice
Overlapping genetic architecture between Parkinson disease and melanoma.
Published in:
Acta Neuropathologica, 2020, v. 139, n. 2, p. 347, doi. 10.1007/s00401-019-02110-z
By:
- Dube, Umber;
- Ibanez, Laura;
- Budde, John P.;
- Benitez, Bruno A.;
- Davis, Albert A.;
- Harari, Oscar;
- Iles, Mark M.;
- Law, Matthew H.;
- Brown, Kevin M.;
- 23andMe Research Team;
- Agee, Michelle;
- Alipanahi, Babak;
- Auton, Adam;
- Bell, Robert K.;
- Bryc, Katarzyna;
- Elson, Sarah L.;
- Fontanillas, Pierre;
- Furlotte, Nicholas A.;
- Hinds, David A.;
- Huber, Karen E.
Publication type:
Article
MBNL proteins repress ES-cell-specific alternative splicing and reprogramming.
Published in:
Nature, 2013, v. 498, n. 7453, p. 241, doi. 10.1038/nature12270
By:
- Han, Hong;
- Irimia, Manuel;
- Ross, P. Joel;
- Sung, Hoon-Ki;
- Alipanahi, Babak;
- David, Laurent;
- Golipour, Azadeh;
- Gabut, Mathieu;
- Michael, Iacovos P.;
- Nachman, Emil N.;
- Wang, Eric;
- Trcka, Dan;
- Thompson, Tadeo;
- O'Hanlon, Dave;
- Slobodeniuc, Valentina;
- Barbosa-Morais, Nuno L.;
- Burge, Christopher B.;
- Moffat, Jason;
- Frey, Brendan J.;
- Nagy, Andras
Publication type:
Article
Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03819-3
By:
- Howard, David M.;
- Adams, Mark J.;
- Shirali, Masoud;
- Clarke, Toni-Kim;
- Marioni, Riccardo E.;
- Davies, Gail;
- Coleman, Jonathan R. I.;
- Alloza, Clara;
- Shen, Xueyi;
- Barbu, Miruna C.;
- Wigmore, Eleanor M.;
- Gibson, Jude;
- Agee, Michelle;
- Alipanahi, Babak;
- Auton, Adam;
- Bell, Robert K.;
- Bryc, Katarzyna;
- Elson, Sarah L.;
- Fontanillas, Pierre;
- Furlotte, Nicholas A.
Publication type:
Article
Underspecification Presents Challenges for Credibility in Modern Machine Learning.
Published in:
Journal of Machine Learning Research, 2022, v. 23, p. 1
By:
- D'Amour, Alexander;
- Heller, Katherine;
- Moldovan, Dan;
- Adlam, Ben;
- Alipanahi, Babak;
- Beutel, Alex;
- Chen, Christina;
- Deaton, Jonathan;
- Eisenstein, Jacob;
- Hoffman, Matthew D.;
- Hormozdiari, Farhad;
- Houlsby, Neil;
- Shaobo Hou;
- Jerfel, Ghassen;
- Karthikesalingam, Alan;
- Lucic, Mario;
- Yian Ma;
- McLean, Cory;
- Mincu, Diana;
- Mitani, Akinori
Publication type:
Article
ERROR TOLERANT NMR BACKBONE RESONANCE ASSIGNMENT AND AUTOMATED STRUCTURE GENERATION.
Published in:
Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 1, p. 15, doi. 10.1142/S0219720011005276
By:
- ALIPANAHI, BABAK;
- GAO, XIN;
- KARAKOC, EMRE;
- Li, SHUAI CHENG;
- BALBACH, FRANK;
- FENG, GUANGYU;
- DONALDSON, LOGAN;
- LI, MING
Publication type:
Article
PROTEIN SECONDARY STRUCTURE PREDICTION USING NMR CHEMICAL SHIFT DATA.
Published in:
Journal of Bioinformatics & Computational Biology, 2010, v. 8, n. 5, p. 867, doi. 10.1142/S0219720010004987
By:
- YUZHONG ZHAO;
- ALIPANAHI, BABAK;
- SHUAI CHENG LI;
- MING LI
Publication type:
Article
PICKY: a novel SVD-based NMR spectra peak picking method.
Published in:
Bioinformatics, 2009, v. 25, n. 12, p. i268, doi. 10.1093/bioinformatics/btp225
By:
- Babak Alipanahi;
- Xin Gao;
- Emre Karakoc;
- Logan Donaldson;
- Ming Li
Publication type:
Article
Disease risk scores for skin cancers.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-20246-5
By:
- Fontanillas, Pierre;
- Alipanahi, Babak;
- Furlotte, Nicholas A.;
- Johnson, Michaela;
- Wilson, Catherine H.;
- 23andMe Research Team;
- Agee, Michelle;
- Bell, Robert K.;
- Bryc, Katarzyna;
- Elson, Sarah L.;
- Hinds, David A.;
- Huber, Karen E.;
- Kleinman, Aaron;
- Litterman, Nadia K.;
- McCreight, Jennifer C.;
- McIntyre, Matthew H.;
- Mountain, Joanna L.;
- Noblin, Elizabeth S.;
- Northover, Carrie A. M.;
- Sathirapongsasuti, J. Fah
Publication type:
Article

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