Works by Ali, Shahin

Results: 37

Proteomic approach for evaluating cryoprotectant formulations for enhanced post-cryopreservation recovery of yeast.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-00534-0

By:

Ramasamy, Thiruganesh;
Tevatia, Rahul;
Ali, Shahin;
Muhle, Anthony;
Knight-Connoni, Victoria;
Chakraborty, Nilay

Publication type:

Article

Cacao pod transcriptome profiling of seven genotypes identifies features associated with post-penetration resistance to Phytophthora palmivora.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-54355-8

By:

Baruah, Indrani K.;
Shao, Jonathan;
Ali, Shahin S.;
Schmidt, Martha E.;
Meinhardt, Lyndel W.;
Bailey, Bryan A.;
Cohen, Stephen P.

Publication type:

Article

Mitochondrial Genomics of Six Cacao Pathogens From the Basidiomycete Family Marasmiaceae.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.752094

By:

Ali, Shahin S.;
Amoako-Attah, Ishmael;
Shao, Jonathan;
Kumi-Asare, Eric;
Meinhardt, Lyndel W.;
Bailey, Bryan A.

Publication type:

Article

Fungal-mediated consolidated bioprocessing: the potential of Fusarium oxysporum for the lignocellulosic ethanol industry.

Published in:

AMB Express, 2016, v. 6, n. 1, p. 1, doi. 10.1186/s13568-016-0185-0

By:

Ali, Shahin;
Nugent, Brian;
Mullins, Ewen;
Doohan, Fiona

Publication type:

Article

SNP markers associated with resistance to frosty pod and black pod rot diseases in an F1 population of Theobroma cacao L.

Published in:

Tree Genetics & Genomes, 2021, v. 17, n. 3, p. 1, doi. 10.1007/s11295-021-01507-w

By:

Gutiérrez, Osman A.;
Puig, Alina S.;
Phillips-Mora, Wilbert;
Bailey, Bryan A.;
Ali, Shahin S.;
Mockaitis, Keithanne;
Schnell, Raymond J.;
Livingstone, Donald;
Mustiga, Guiliana;
Royaert, Stefan;
Motamayor, Juan Carlos

Publication type:

Article

Not just a sprain: 4 foot and ankle injuries you may be missing.

Published in:

2012

By:

Hall S;
Lundeen G;
Shahin A;
Hall, Scott;
Lundeen, Greg;
Shahin, Ali

Publication type:

journal article

Not just a sprain: 4 foot and ankle injuries you may be missing.

Published in:

Journal of Family Practice, 2012, v. 61, n. 4, p. 198

By:

Hall, Scott;
Lundeen, Greg;
Shahin, Ali

Publication type:

Article

Changes in Gene Expression in Leaves of Cacao Genotypes Resistant and Susceptible to Phytophthora palmivora Infection.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2021.780805

By:

Baruah, Indrani K.;
Ali, Shahin S.;
Shao, Jonathan;
Lary, David;
Bailey, Bryan A.

Publication type:

Article

Automated Detection and Characterization of Colon Cancer with Deep Convolutional Neural Networks.

Published in:

Journal of Healthcare Engineering, 2022, p. 1, doi. 10.1155/2022/5269913

By:

Hasan, Md Imran;
Ali, Md Shahin;
Rahman, Md Habibur;
Islam, Md Khairul

Publication type:

Article

Automated Detection and Characterization of Colon Cancer with Deep Convolutional Neural Networks.

Published in:

Journal of Healthcare Engineering, 2022, p. 1, doi. 10.1155/2022/5269913

By:

Hasan, Imran;
Ali, Shahin;
Rahman, Habibur;
Islam, Khairul

Publication type:

Article

Simple and accurate model of diffuse reflectance for two-layer medium mimics brain tissues based on diffusion approximation.

Published in:

Journal of Optics (09728821), 2024, v. 53, n. 3, p. 1779, doi. 10.1007/s12596-023-01463-9

By:

Shahin, Ali

Publication type:

Article

Phytophthora megakarya and Phytophthora palmivora, Closely Related Causal Agents of Cacao Black Pod Rot, Underwent Increases in Genome Sizes and Gene Numbers by Different Mechanisms.

Published in:

Genome Biology & Evolution, 2017, v. 9, n. 3, p. 536, doi. 10.1093/gbe/evx021

By:

Ali, Shahin S.;
Shao, Jonathan;
Lary, David J.;
Kronmiller, Brent A.;
Danyu Shen;
Strem, Mary D.;
Amoako-Attah, Ishmael;
Akrofi, Andrew Yaw;
Begoude, B. A. Didier;
Hoopen, G. Martijn ten;
Coulibaly, Klotioloma;
Kebe, Boubacar Ismaël;
Melnick, Rachel L.;
Guiltinan, Mark J.;
Tyler, Brett M.;
Meinhardt, Lyndel W.;
Bailey, Bryan A.

Publication type:

Article

Global transcript and phenotypic analysis of yeast cells expressing Ssa1, Ssa2, Ssa3 or Ssa4 as sole source of cytosolic Hsp70-Ssa chaperone activity.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-194

By:

Hasin, Naushaba;
Cusack, Sarah A.;
Ali, Shahin S.;
Fitzpatrick, David A.;
Jones, Gary W.

Publication type:

Article

Synthesis and characterization of a chitosan/gelatin transparent film crosslinked with a combination of EDC/NHS for corneal epithelial cell culture scaffold with potential application in cornea implantation.

Published in:

International Journal of Polymeric Materials & Polymeric Biomaterials, 2022, v. 71, n. 8, p. 568, doi. 10.1080/00914037.2020.1865349

By:

Shahin, Ali;
Ramazani S.A, Ahmad;
Mehraji, Sima;
Eslami, Hamed

Publication type:

Article

An Enhanced Technique of COVID-19 Detection and Classification Using Deep Convolutional Neural Network from Chest X-Ray and CT Images.

Published in:

BioMed Research International, 2023, p. 1, doi. 10.1155/2023/6341259

By:

Islam, Md Khairul;
Rahman, Md Mahbubur;
Ali, Md Shahin;
Miah, Md Sipon;
Rahman, Md Habibur

Publication type:

Article

A Novel Approach for Best Parameters Selection and Feature Engineering to Analyze and Detect Diabetes: Machine Learning Insights.

Published in:

BioMed Research International, 2023, p. 1, doi. 10.1155/2023/8583210

By:

Ali, Md Shahin;
Islam, Md Khairul;
Das, A. Arjan;
Duranta, D. U. S.;
Haque, Mst. Farija;
Rahman, Md Habibur

Publication type:

Article

Optical properties in the visible range of two different India ink used as biological phantoms.

Published in:

European Physical Journal - Applied Physics, 2021, v. 93, n. 1, p. 1, doi. 10.1051/epjap/2020200234

By:

Shahin, Ali;
Bachir, Wesam;
El-Daher, Moustafa Sayem

Publication type:

Article

Non‐contact vital signs monitoring in broiler chickens.

Published in:

Journal of Engineering, 2023, v. 2023, n. 11, p. 1, doi. 10.1049/tje2.12320

By:

Hossain, Md. Shafkat;
Pramanik, Sourav Kumar;
Rahman, Atikur;
Ali, Shahin;
Islam, Shekh Md Mahmudul

Publication type:

Article

Comparative study between superficial and deep cephalic vein of mature brachiocephalic arteriovenous fistula regarding easy needling and complications.

Published in:

Egyptian Journal of Surgery, 2022, v. 41, n. 4, p. 1546, doi. 10.4103/ejs.ejs_255_22

By:

Ali Shahin, Nashwan A. H.;
Kamel Boles, Refaat R.;
Mahmoud Abd Elbary, Mostafa S.;
AboElNeel, Hamdy A.

Publication type:

Article

Polystyrene Microsphere Optical Properties by Kubelka–Munk and Diffusion Approximation with a Single Integrating Sphere System: A Comparative Study.

Published in:

Journal of Spectroscopy, 2019, p. 1, doi. 10.1155/2019/3406319

By:

Shahin, Ali;
Bachir, Wesam;
Sayem El-Daher, Moustafa

Publication type:

Article

Identification of Fusarium oxysporum Genes Associated with Lignocellulose Bioconversion Competency.

Published in:

BioEnergy Research, 2014, v. 7, n. 1, p. 110, doi. 10.1007/s12155-013-9353-0

By:

Ali, Shahin;
Khan, Mojibur;
Mullins, Ewen;
Doohan, Fiona

Publication type:

Article

Genome and transcriptome analysis of the latent pathogen Lasiodiplodia theobromae, an emerging threat to the cacao industry.

Published in:

Genome, 2020, v. 63, n. 1, p. 37, doi. 10.1139/gen-2019-0112

By:

Ali, Shahin S.;
Asman, Asman;
Shao, Jonathan;
Balidion, Johnny F.;
Strem, Mary D.;
Puig, Alina S.;
Meinhardt, Lyndel W.;
Bailey, Bryan A.

Publication type:

Article

Combination of RNAseq and SNP nanofluidic array reveals the center of genetic diversity of cacao pathogen Moniliophthora roreri in the upper Magdalena Valley of Colombia and its clonality.

Published in:

Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00850

By:

Ali, Shahin S.;
Shao, Jonathan;
Strem, Mary D.;
Phillips-Mora, Wilberth;
Dapeng Zhang;
Meinhardt, Lyndel W.;
Bailey, Bryan A.;
Guimaraes, Luciana Lopes;
Rodrigues, Anderson Messias

Publication type:

Article

Clonal reproduction of Moniliophthora roreri and the emergence of unique lineages with distinct genomes during range expansion.

Published in:

G3: Genes | Genomes | Genetics, 2023, v. 13, n. 9, p. 1, doi. 10.1093/g3journal/jkad125

By:

Minio, Andrea;
Figueroa-Balderas, Rosa;
Cohen, Stephen P.;
Ali, Shahin S.;
Carriel, Denny;
Britto, Dahyana;
Stack, Conrad;
Baruah, Indrani K.;
Marelli, Jean-Philippe;
Cantu, Dario;
Bailey, Bryan A.

Publication type:

Article

Independent Whole-Genome Duplications Define the Architecture of the Genomes of the Devastating West African Cacao Black Pod Pathogen Phytophthora megakarya and Its Close Relative Phytophthora palmivora.

Published in:

G3: Genes | Genomes | Genetics, 2020, v. 10, n. 7, p. 2241, doi. 10.1534/g3.120.401014

By:

Morales-Cruz, Abraham;
Ali, Shahin S.;
Minio, Andrea;
Figueroa-Balderas, Rosa;
García, Jadran F.;
Takao Kasuga;
Puig, Alina S.;
Marelli, Jean-Philippe;
Bailey, Bryan A.;
Cantu, Dario

Publication type:

Article

A Major Facilitator Superfamily Peptide Transporter From Fusarium oxysporum Influences Bioethanol Production From Lignocellulosic Material.

Published in:

Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00295

By:

Nugent, Brian;
Ali, Shahin S.;
Mullins, Ewen;
Doohan, Fiona M.

Publication type:

Article

Survival capacity of cacao top grafted with scions infected by vascular streak dieback pathogen: potential source of the disease long-distance spread.

Published in:

Archives of Phytopathology & Plant Protection, 2019, v. 52, n. 13/14, p. 1095, doi. 10.1080/03235408.2019.1688447

By:

Asman, Asman;
Rosmana, Ade;
Amin, Nur;
Bailey, Bryan A.;
Ali, Shahin S.

Publication type:

Article

Moniliophthora roreri, causal agent of cacao frosty pod rot.

Published in:

Molecular Plant Pathology, 2018, v. 19, n. 7, p. 1580, doi. 10.1111/mpp.12648

By:

Bailey, Bryan A.;
Evans, Harry C.;
Phillips‐Mora, Wilbert;
Ali, Shahin S.;
Meinhardt, Lyndel W.

Publication type:

Article

Differential gene expression by Moniliophthora roreri while overcoming cacao tolerance in the field.

Published in:

Molecular Plant Pathology, 2014, v. 15, n. 7, p. 711, doi. 10.1111/mpp.12134

By:

Bailey, Bryan A.;
Melnick, Rachel L.;
Strem, Mary D.;
Crozier, Jayne;
Shao, Jonathan;
Sicher, Richard;
Phillips‐Mora, Wilberth;
Ali, Shahin S.;
Zhang, Dapeng;
Meinhardt, Lyndel

Publication type:

Article

Successful pod infections by Moniliophthora roreri result in differential Theobroma cacao gene expression depending on the clone's level of tolerance.

Published in:

Molecular Plant Pathology, 2014, v. 15, n. 7, p. 698, doi. 10.1111/mpp.12126

By:

Ali, Shahin S.;
Melnick, Rachel L.;
Crozier, Jayne;
Phillips‐Mora, Wilberth;
Strem, Mary D.;
Shao, Jonathan;
Zhang, Dapeng;
Sicher, Richard;
Meinhardt, Lyndel;
Bailey, Bryan A.

Publication type:

Article

Insights from the Fungus Fusarium oxysporum Point to High Affinity Glucose Transporters as Targets for Enhancing Ethanol Production from Lignocellulose.

Published in:

PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0054701

By:

Ali, Shahin S.;
Nugent, Brian;
Mullins, Ewen;
Doohan, Fiona M.

Publication type:

Article

Efficient Deep Learning-Based Data-Centric Approach for Autism Spectrum Disorder Diagnosis from Facial Images Using Explainable AI.

Published in:

Technologies (2227-7080), 2023, v. 11, n. 5, p. 115, doi. 10.3390/technologies11050115

By:

Alam, Mohammad Shafiul;
Rashid, Muhammad Mahbubur;
Faizabadi, Ahmed Rimaz;
Mohd Zaki, Hasan Firdaus;
Alam, Tasfiq E.;
Ali, Md Shahin;
Gupta, Kishor Datta;
Ahsan, Md Manjurul

Publication type:

Article

Draft genome sequence of fastidious pathogen Ceratobasidium theobromae, which causes vascular-streak dieback in Theobroma cacao.

Published in:

Fungal Biology & Biotechnology, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40694-019-0077-6

By:

Ali, Shahin S.;
Asman, Asman;
Shao, Jonathan;
Firmansyah, Amanda P.;
Susilo, Agung W.;
Rosmana, Ade;
McMahon, Peter;
Junaid, Muhammad;
Guest, David;
Kheng, Tee Yei;
Meinhardt, Lyndel W.;
Bailey, Bryan A.

Publication type:

Article

Phytophthora megakarya and P. palmivora, Causal Agents of Black Pod Rot, Induce Similar Plant Defense Responses Late during Infection of Susceptible Cacao Pods.

Published in:

Frontiers in Plant Science, 2017, v. 8, p. 1, doi. 10.3389/fpls.2017.00169

By:

Ali, Shahin S.;
Shao, Jonathan;
Lary, David J.;
Strem, Mary D.;
Meinhardt, Lyndel W.;
Bailey, Bryan A.

Publication type:

Article

Pathogenicity of Lasiodiplodia theobromae isolated from cocoa dieback disease in South Sulawesi, Indonesia.

Published in:

Journal of Phytopathology, 2024, v. 172, n. 4, p. 1, doi. 10.1111/jph.13352

By:

Asman, Asman;
Rosmana, Ade;
Bailey, Bryan A.;
Ali, Shahin S.;
Iwanami, Toru;
Sjam, Sylvia;
Amin, Nur;
Kuswinanti, Tutik

Publication type:

Article

Plant disease resistance is augmented in uzu barley lines modified in the brassinosteroid receptor BRI1.

Published in:

BMC Plant Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/s12870-014-0227-1

By:

Ali, Shahin S.;
Gunupuru, Lokanadha R.;
Kumar, G. B. Sunil;
Khan, Mojibur;
Scofield, Steve;
Nicholson, Paul;
Doohan, Fiona M.

Publication type:

Article

Auxin as a player in the biocontrol of Fusarium head blight disease of barley and its potential as a disease control agent.

Published in:

BMC Plant Biology, 2012, v. 12, n. 1, p. 224, doi. 10.1186/1471-2229-12-224

By:

Petti, Carloalberto;
Reiber, Kathrin;
Ali, Shahin S;
Barney, Margaret;
Doohan, Fiona M

Publication type:

Article