Works by Alberts, Rudi

Results: 23

ZDOG: zooming in on dominating genes with mutations in cancer pathways.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3326-z

By:

Alberts, Rudi;
Chen, Jinyu;
Zhang, Louxin

Publication type:

Article

Bioinformatics tools and database resources for systems genetics analysis in mice—a short review and an evaluation of future needs.

Published in:

Briefings in Bioinformatics, 2012, v. 13, n. 2, p. 135, doi. 10.1093/bib/bbr026

By:

Durrant, Caroline;
Swertz, Morris A.;
Alberts, Rudi;
Arends, Danny;
Möller, Steffen;
Mott, Richard;
Prins, Pjotr;
van der Velde, K. Joeri;
Jansen, Ritsert C.;
Schughart, Klaus

Publication type:

Article

Combining microarrays and genetic analysis.

Published in:

Briefings in Bioinformatics, 2005, v. 6, n. 2, p. 135, doi. 10.1093/bib/6.2.135

By:

Alberts, Rudi;
Jingyuan Fu;
Swertz, Morris A.;
Lubbers, L. Alrik;
Albers, Casper J.;
Jansen, Ritsert C.

Publication type:

Article

High frequency of bedaquiline resistance in programmatically treated drug-resistant TB patients with sustained culture-positivity in Cape Town, South Africa.

Published in:

International Journal of Mycobacteriology, 2021, v. 10, p. 9, doi. 10.4103/2212-5531.307132

By:

Derendinger, Brigitta;
Dippenaar, Anzaan;
de Vos, Margaretha;
Alberts, Rudi;
Sirgel, Frederick;
Dolby, Tania;
Spies, Claudia;
Rigouts, Leen;
Metcalfe, John;
Engelthaler, David;
Warren, Rob;
Cox, Helen;
Theron, Grant

Publication type:

Article

ATR-FTIR spectroscopy reveals genomic loci regulating the tissue response in high fat diet fed BXD recombinant inbred mouse strains.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-386

By:

Dogan, Ayca;
Lasch, Peter;
Neuschl, Christina;
Millrose, Marion K.;
Alberts, Rudi;
Schughart, Klaus;
Naumann, Dieter;
Brockmann, Gudrun A.

Publication type:

Article

Distinct gene loci control the host response to influenza H1N1 virus infection in a time-dependent manner.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 411, doi. 10.1186/1471-2164-13-411

By:

Nedelko, Tatiana;
Kollmus, Heike;
Klawonn, Frank;
Spijker, Sabine;
Lu Lu;
He�man, Manuela;
Alberts, Rudi;
Williams, Robert W.;
Schughart, Klaus

Publication type:

Article

Pooled Resequencing of 122 Ulcerative Colitis Genes in a Large Dutch Cohort Suggests Population-Specific Associations of Rare Variants in MUC2.

Published in:

PLoS ONE, 2016, v. 11, n. 8, p. 1, doi. 10.1371/journal.pone.0159609

By:

Visschedijk, Marijn C.;
Alberts, Rudi;
Mucha, Soren;
Deelen, Patrick;
de Jong, Dirk J.;
Pierik, Marieke;
Spekhorst, Lieke M.;
Imhann, Floris;
van der Meulen-de Jong, Andrea E.;
van der Woude, C. Janneke;
van Bodegraven, Adriaan A.;
Oldenburg, Bas;
Löwenberg, Mark;
Dijkstra, Gerard;
Ellinghaus, David;
Schreiber, Stefan;
Wijmenga, Cisca;
null, null;
Rivas, Manuel A.;
Franke, Andre

Publication type:

Article

Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'.

Published in:

Nature Genetics, 2005, v. 37, n. 3, p. 225, doi. 10.1038/ng1497

By:

Bystrykh, Leonid;
Weersing, Ellen;
Dontje, Bert;
Sutton, Sue;
Pletcher, Mathew T;
Wiltshire, Tim;
Su, Andrew I;
Vellenga, Edo;
Wang, Jintao;
Manly, Kenneth F;
Lu, Lu;
Chesler, Elissa J;
Alberts, Rudi;
Jansen, Ritsert C;
Williams, Robert W;
Cooke, Michael P;
de Haan, Gerald

Publication type:

Article

A Statistical Multiprobe Model for Analyzing cis and trans Genes in Genetical Genomics Experiments With Short-Oligonucleotide Arrays.

Published in:

Genetics, 2005, v. 171, n. 3, p. 1437, doi. 10.1534/genetics.105.045930

By:

Alberts, Rudi;
Terpstra, Peter;
Bystrykh, Leonid V.;
de Haan, Gerald;
Jansen, Ritsert C.

Publication type:

Article

Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome.

Published in:

Science Translational Medicine, 2018, v. 10, n. 472, p. N.PAG, doi. 10.1126/scitranslmed.aap8914

By:

Vich Vila, Arnau;
Imhann, Floris;
Collij, Valerie;
Jankipersadsing, Soesma A.;
Gurry, Thomas;
Mujagic, Zlatan;
Kurilshikov, Alexander;
Bonder, Marc Jan;
Jiang, Xiaofang;
Tigchelaar, Ettje F.;
Dekens, Jackie;
Peters, Vera;
Voskuil, Michiel D.;
Visschedijk, Marijn C.;
van Dullemen, Hendrik M.;
Keszthelyi, Daniel;
Swertz, Morris A.;
Franke, Lude;
Alberts, Rudi;
Festen, Eleonora A. M.

Publication type:

Article

Genomic and Expression Analyses Identify a Disease-Modifying Variant for Fibrostenotic Crohn's Disease.

Published in:

Journal of Crohn's & Colitis, 2018, v. 12, n. 5, p. 582, doi. 10.1093/ecco-jcc/jjy001

By:

Visschedijk, Marijn C.;
Spekhorst, Lieke M.;
Shih-Chin Cheng;
van Loo, Ellen S.;
Jansen, B. H. Dianne;
Blokzijl, Tjasso;
Kil, Hyunsuk;
de Jong, Dirk J.;
Pierik, Marieke;
Maljaars, Jeroen P. W. J.;
van der Woude, C. Janneke;
van Bodegraven, Adriaan A.;
Oldenburg, Bas;
Löwenberg, Mark;
Nieuwenhuijs, Vincent B.;
Imhann, Floris;
van Sommeren, Suzanne;
Alberts, Rudi;
Xavier, Ramnik J.;
Dijkstra, Gerard

Publication type:

Article

Genome-wide analysis of the mouse lung transcriptome reveals novel molecular gene interaction networks and cell-specific expression signatures.

Published in:

2012

By:

Alberts, Rudi;
Lu Lu;
Williams, Robert W.;
Schughart, Klaus

Publication type:

Correction Notice

Genome-wide analysis of the mouse lung transcriptome reveals novel molecular gene interaction networks and cell-specific expression signatures.

Published in:

2011

By:

Alberts, Rudi;
Lu Lu;
Williams, Robert W.;
Schughart, Klaus;
Lu, Lu

Publication type:

journal article

affyGG: computational protocols for genetical genomics with Affymetrix arrays.

Published in:

Bioinformatics, 2008, v. 24, n. 3, p. 433, doi. 10.1093/bioinformatics/btm614

By:

Rudi Alberts;
Gonzalo Vera;
Ritsert C. Jansen

Publication type:

Article

Annexin-A1 deficiency attenuates stress-induced tumor growth via fatty acid metabolism in mice: an Integrated multiple omics analysis on the stress-microbiome-metabolite-epigenetic-oncology (SMMEO) axis.

Published in:

Theranostics, 2022, v. 12, n. 8, p. 3794, doi. 10.7150/thno.68611

By:

Jianzhou Cui;
Sachaphibulkij, Karishma;
Wen Shiun Teo;
Hong Meng Lim;
Li Zou;
Choon Nam Ong;
Alberts, Rudi;
Jinmiao Chen;
Lim, Lina H. K.

Publication type:

Article

QTLminer: identifying genes regulating quantitative traits.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 516, doi. 10.1186/1471-2105-11-516

By:

Alberts, Rudi;
Schughart, Klaus

Publication type:

Article

A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.

Published in:

BMC Bioinformatics, 2007, v. 8, p. 132, doi. 10.1186/1471-2105-8-132

By:

Alberts, Rudi;
Terpstra, Peter;
Hardonk, Menno;
Bystrykh, Leonid V;
de Haan, Gerald;
Breitling, Rainer;
Nap, Jan-Peter;
Jansen, Ritsert C

Publication type:

Article

MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians.

Published in:

Bioinformatics, 2019, v. 35, n. 6, p. 1076, doi. 10.1093/bioinformatics/bty742

By:

Velde, K Joeri van der;
Imhann, Floris;
Charbon, Bart;
Pang, Chao;
Enckevort, David van;
Slofstra, Mariska;
Barbieri, Ruggero;
Alberts, Rudi;
Hendriksen, Dennis;
Kelpin, Fleur;
Haan, Mark de;
Boer, Tommy de;
Haakma, Sido;
Stroomberg, Connor;
Scholtens, Salome;
van de Geijn, Gert-Jan;
Festen, Eleonora A M;
Weersma, Rinse K;
Swertz, Morris A

Publication type:

Article

Towards the integration of mouse databases - definition and implementation of solutions to two use-cases in mouse functional genomics.

Published in:

BMC Research Notes, 2010, v. 3, p. 1, doi. 10.1186/1756-0500-3-16

By:

Gruenberger, Michael;
Alberts, Rudi;
Smedley, Damian;
Swertz, Morris;
Schofield, Paul;
Schughart, Klaus

Publication type:

Article

Systems Genetics of Liver Fibrosis: Identification of Fibrogenic and Expression Quantitative Trait Loci in the BXD Murine Reference Population.

Published in:

PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0089279

By:

Hall, Rabea A.;
Liebe, Roman;
Hochrath, Katrin;
Kazakov, Andrey;
Alberts, Rudi;
Laufs, Ulrich;
Böhm, Michael;
Fischer, Hans-Peter;
Williams, Robert W.;
Schughart, Klaus;
Weber, Susanne N.;
Lammert, Frank

Publication type:

Article

Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.

Published in:

Nature Genetics, 2015, v. 47, n. 9, p. 979, doi. 10.1038/ng.3359

By:

Shah, Tejas;
Barrett, Jeffrey C;
Daryani, Naser E;
B K, Thelma;
Orchard, Timothy R;
Ng, Siew C;
Weersma, Rinse K;
Jostins, Luke;
Vahedi, Homayon;
Juyal, Ramesh C;
Midha, Vandana;
Ripke, Stephan;
Daly, Mark J;
Alberts, Rudi;
Poustchi, Hossein;
Kim, Won Ho;
Kubo, Michiaki;
Juyal, Garima;
Newman, William G;
Franke, Andre

Publication type:

Article

Generation and analysis of ESTs from strawberry (Fragaria xananassa) fruits and evaluation of their utility in genetic and molecular studies.

Published in:

BMC Genomics, 2010, v. 11, p. 503, doi. 10.1186/1471-2164-11-503

By:

Michaelson, Jacob J.;
Alberts, Rudi;
Schughart, Klaus;
Beyer, Andreas

Publication type:

Article

Data-driven assessment of eQTL mapping methods.

Published in:

BMC Genomics, 2010, v. 11, p. 502, doi. 10.1186/1471-2164-11-502

By:

Michaelson, Jacob J.;
Alberts, Rudi;
Schughart, Klaus;
Beyer, Andreas

Publication type:

Article