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Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures.
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- Nucleic Acids Research, 2017, v. 45, n. D1, p. D282, doi. 10.1093/nar/gkw962
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- Article
Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format.
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- Nucleic Acids Research, 2012, p. D453, doi. 10.1093/nar/gkr811
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- Article
Protein structure databases with new web services for structural biology and biomedical research.
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- Briefings in Bioinformatics, 2008, v. 9, n. 4, p. 276, doi. 10.1093/bib/bbn015
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- Article
Publication of nuclear magnetic resonance experimental data with semantic web technology and the application thereof to biomedical research of proteins.
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- Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0057-1
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- Article
Implementation of linked data in the life sciences at BioHackathon 2011.
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- Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/2041-1480-6-3
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- Article
Implementation of linked data in the life sciences at BioHackathon 2011.
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- Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 38, doi. 10.1186/2041-1480-6-3
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- Article
Specific Non-Local Interactions Are Not Necessary for Recovering Native Protein Dynamics.
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- PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0091347
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- Article
Composite Structural Motifs of Binding Sites for Delineating Biological Functions of Proteins.
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- PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0031437
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- Article
Nature of Protein Family Signatures: Insights from Singular Value Analysis of Position-Specific Scoring Matrices.
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- PLoS ONE, 2008, v. 3, n. 4, p. 1, doi. 10.1371/journal.pone.0001963
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- Article
Rigid-body motions of interacting proteins dominate multispecific binding of ubiquitin in a shape-dependent manner.
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- Proteins, 2014, v. 82, n. 1, p. 77, doi. 10.1002/prot.24371
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- Article
Predicting absolute contact numbers of native protein structure from amino acid sequence.
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- Proteins, 2005, v. 58, n. 1, p. 158, doi. 10.1002/prot.20300
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- Article
Cooperative approach for the protein fold recognition.
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- Proteins, 1999, v. 37, n. S3, p. 126, doi. 10.1002/(SICI)1097-0134(1999)37:3+<126::AID-PROT17>3.0.CO;2-8
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- Article
Comparison of energy components of proteins from thermophilic and mesophilic organisms.
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- European Biophysics Journal, 2001, v. 30, n. 5, p. 378, doi. 10.1007/s002490100161
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- Article
Physicochemical evaluation of protein folds predicted by threading.
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- European Biophysics Journal, 2001, v. 30, n. 1, p. 1, doi. 10.1007/s002490000111
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- Article
PDBj Mine: design and implementation of relational database interface for Protein Data Bank Japan.
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- Database: The Journal of Biological Databases & Curation, 2010, v. 2010, p. 1, doi. 10.1093/database/baq021
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- Article
Molmil: a molecular viewer for the PDB and beyond.
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- Journal of Cheminformatics, 2016, v. 8, p. 1, doi. 10.1186/s13321-016-0155-1
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- Article
Who Interprets the Data?
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- Seibutsu Butsuri, 2010, v. 50, n. 4, p. 166, doi. 10.2142/biophys.50.166
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- Article
Recoverable one-dimensional encoding of three-dimensional protein structures.
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- Bioinformatics, 2005, v. 21, n. 10, p. 2167, doi. 10.1093/bioinformatics/bti330
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- Article
Eigenvalue analysis of amino acid substitution matrices reveals a sharp transition of the mode of sequence conservation in proteins.
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- Bioinformatics, 2004, v. 20, n. 16, p. 2504, doi. 10.1093/bioinformatics/bth297
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- Article
Plasticity-led and mutation-led evolutions are different modes of the same developmental gene regulatory network.
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- PeerJ, 2024, p. 1, doi. 10.7717/peerj.17102
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- Article
GIRAF: a method for fast search and flexible alignment of ligand binding interfaces in proteins at atomic resolution.
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- Biophysics (13492942), 2012, v. 8, p. 79, doi. 10.2142/biophysics.8.79
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- Article
Profile conditional random fields for modeling protein families with structural information.
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- Biophysics (13492942), 2009, v. 5, p. 37, doi. 10.2142/biophysics.5.37
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- Article
Counterbalance of ligand- and self-coupled motions characterizes multispecificity of ubiquitin.
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- Protein Science: A Publication of the Protein Society, 2013, v. 22, n. 2, p. 168, doi. 10.1002/pro.2195
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- Article
Functional characterization of protein domains common to animal viruses and mouse.
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- BMC Genomics, 2011, v. 12, n. Suppl 3, p. 1, doi. 10.1186/1471-2164-12-S3-S21
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- Article
Neuro-symbolic representation learning on biological knowledge graphs.
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- Bioinformatics, 2017, v. 33, n. 17, p. 2723, doi. 10.1093/bioinformatics/btx275
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- Article
SeSAW: balancing sequence and structural information in protein functional mapping.
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- Bioinformatics, 2010, v. 26, n. 9, p. 1258, doi. 10.1093/bioinformatics/btq116
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- Article
Plasticity-led evolution as an intrinsic property of developmental gene regulatory networks.
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- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-47165-x
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- Article
New tools and functions in data-out activities at Protein Data Bank Japan (PDBj).
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- Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 95, doi. 10.1002/pro.3273
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- Article
Exhaustive comparison and classification of ligand-binding surfaces in proteins.
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- Protein Science: A Publication of the Protein Society, 2013, v. 22, n. 10, p. 1379, doi. 10.1002/pro.2329
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- Article