Works by Aki Minoda

Results: 16

An assessment of histone-modification antibody quality.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 1, p. 91, doi. 10.1038/nsmb.1972

By:

Egelhofer, Thea A;
Minoda, Aki;
Klugman, Sarit;
Lee, Kyungjoon;
Kolasinska-Zwierz, Paulina;
Alekseyenko, Artyom A;
Cheung, Ming-Sin;
Day, Daniel S;
Gadel, Sarah;
Gorchakov, Andrey A;
Gu, Tingting;
Kharchenko, Peter V;
Kuan, Samantha;
Latorre, Isabel;
Linder-Basso, Daniela;
Luu, Ying;
Ngo, Queminh;
Perry, Marc;
Rechtsteiner, Andreas;
Riddle, Nicole C

Publication type:

Article

Food antigens suppress small intestinal tumorigenesis.

Published in:

Frontiers in Immunology, 2024, p. 01, doi. 10.3389/fimmu.2024.1373766

By:

Takaharu Sasaki;
Yuna Ota;
Yui Takikawa;
Terrooatea, Tommy;
Takashi Kanaya;
Masumi Takahashi;
Naoko Taguchi-Atarashi;
Naoko Tachibana;
Haruka Yabukami;
Surh, Charles D.;
Aki Minoda;
Kwang Soon Kim;
Hiroshi Ohno

Publication type:

Article

Transcriptomic and lipidomic analysis of aging-associated inflammatory signature in mouse liver.

Published in:

Inflammation & Regeneration, 2025, v. 45, n. 1, p. 1, doi. 10.1186/s41232-025-00377-2

By:

Ishihara, Tomoaki;
Tsugawa, Hiroshi;
Iwanami, Seigo;
Chang, Jen-Chien;
Minoda, Aki;
Arita, Makoto

Publication type:

Article

A flexible cross-platform single-cell data processing pipeline.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34681-z

By:

Battenberg, Kai;
Kelly, S. Thomas;
Ras, Radu Abu;
Hetherington, Nicola A.;
Hayashi, Makoto;
Minoda, Aki

Publication type:

Article

Maternal Renal Dysfunction in Late Pregnancy in Twin and Singleton Pregnancies: Retrospective Study.

Published in:

Journal of Clinical Medicine, 2023, v. 12, n. 1, p. 90, doi. 10.3390/jcm12010090

By:

Minoda, Aki;
Tsuda, Hiroyuki;
Masahashi, Yoshiki;
Nakamura, Takuto;
Suzuki, Miho;
Fukuhara, Nobuhiko;
Ito, Yumiko;
Tezuka, Atsuko;
Ando, Tomoko;
Mizuno, Kimio

Publication type:

Article

Priming of lineage-specifying genes by Bcl11b is required for lineage choice in post-selection thymocytes.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00768-1

By:

Satoshi Kojo;
Hirokazu Tanaka;
Endo, Takaho A.;
Sawako Muroi;
Ye Liu;
Wooseok Seo;
Mari Tenno;
Kiyokazu Kakugawa;
Yoshinori Naoe;
Krutula Nair;
Kazuyo Moro;
Yoshinori Katsuragi;
Akinori Kanai;
Toshiya Inaba;
Takeshi Egawa;
Venkatesh, Byrappa;
Aki Minoda;
Ryo Kominami;
Ichiro Taniuchi

Publication type:

Article

Defining super-enhancers by highly ranked histone H4 multi-acetylation levels identifies transcription factors associated with glioblastoma stem-like properties.

Published in:

BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09659-w

By:

Das, Nando D.;
Chang, Jen-Chien;
Hon, Chung-Chau;
Kelly, S. Thomas;
Ito, Shinsuke;
Lizio, Marina;
Kaczkowski, Bogumil;
Watanabe, Hisami;
Katsushima, Keisuke;
Natsume, Atsushi;
Koseki, Haruhiko;
Kondo, Yutaka;
Minoda, Aki;
Umehara, Takashi

Publication type:

Article

OVOL2 induces mesenchymal-to-epithelial transition in fibroblasts and enhances cell-state reprogramming towards epithelial lineages.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-43021-z

By:

Watanabe, Kazuhide;
Liu, Ye;
Noguchi, Shuhei;
Murray, Madeleine;
Chang, Jen-Chien;
Kishima, Mami;
Nishimura, Hajime;
Hashimoto, Kosuke;
Minoda, Aki;
Suzuki, Harukazu

Publication type:

Article

Activation of ILC2s through constitutive IFNγ signaling reduction leads to spontaneous pulmonary fibrosis.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-43336-6

By:

Otaki, Natsuko;
Motomura, Yasutaka;
Terooatea, Tommy;
Thomas Kelly, S.;
Mochizuki, Miho;
Takeno, Natsuki;
Koyasu, Shigeo;
Tamamitsu, Miu;
Sugihara, Fuminori;
Kikuta, Junichi;
Kitamura, Hideya;
Shiraishi, Yoshiki;
Miyanohara, Jun;
Nagano, Yuji;
Saita, Yuji;
Ogura, Takashi;
Asano, Koichiro;
Minoda, Aki;
Moro, Kazuyo

Publication type:

Article

Comparative analysis of metazoan chromatin organization.

Published in:

Nature, 2014, v. 512, n. 7515, p. 449, doi. 10.1038/nature13415

By:

Ho, Joshua W. K.;
Jung, Youngsook L.;
Liu, Tao;
Alver, Burak H.;
Lee, Soohyun;
Ikegami, Kohta;
Sohn, Kyung-Ah;
Minoda, Aki;
Tolstorukov, Michael Y.;
Appert, Alex;
Parker, Stephen C. J.;
Gu, Tingting;
Kundaje, Anshul;
Riddle, Nicole C.;
Bishop, Eric;
Egelhofer, Thea A.;
Hu, Sheng'en Shawn;
Alekseyenko, Artyom A.;
Rechtsteiner, Andreas;
Asker, Dalal

Publication type:

Article

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.

Published in:

Nature, 2011, v. 471, n. 7339, p. 480, doi. 10.1038/nature09725

By:

Kharchenko, Peter V.;
Alekseyenko, Artyom A.;
Schwartz, Yuri B.;
Minoda, Aki;
Riddle, Nicole C.;
Ernst, Jason;
Sabo, Peter J.;
Larschan, Erica;
Gorchakov, Andrey A.;
Gu, Tingting;
Linder-Basso, Daniela;
Plachetka, Annette;
Shanower, Gregory;
Tolstorukov, Michael Y.;
Luquette, Lovelace J.;
Xi, Ruibin;
Jung, Youngsook L.;
Park, Richard W.;
Bishop, Eric P.;
Canfield, Theresa K.

Publication type:

Article

Impact of sequencing depth in ChIP-seq experiments.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 1, doi. 10.1093/nar/gku178

By:

Youngsook L. Jung;
Luquette, Lovelace J.;
Ho, Joshua W. K.;
Ferrari, Francesco;
Tolstorukov, Michael;
Aki Minoda;
Issner, Robbyn;
Epstein, Charles B.;
Karpen, Gary H.;
Kuroda, Mitzi I.;
Park, Peter J.

Publication type:

Article

Impact of sequencing depth in ChIP-seq experiments.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. e74, doi. 10.1093/nar/gku178

By:

Jung, Youngsook L.;
Luquette, Lovelace J.;
Ho, Joshua W.K.;
Ferrari, Francesco;
Tolstorukov, Michael;
Minoda, Aki;
Issner, Robbyn;
Epstein, Charles B.;
Karpen, Gary H.;
Kuroda, Mitzi I.;
Park, Peter J.

Publication type:

Article

JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states.

Published in:

Epigenetics, 2018, v. 13, n. 4, p. 410, doi. 10.1080/15592294.2018.1469891

By:

Handoko, Lusy;
Kaczkowski, Bogumil;
Hon, Chung-Chau;
Lizio, Marina;
Wakamori, Masatoshi;
Matsuda, Takayoshi;
Ito, Takuhiro;
Jeyamohan, Prashanti;
Sato, Yuko;
Sakamoto, Kensaku;
Yokoyama, Shigeyuki;
Kimura, Hiroshi;
Minoda, Aki;
Umehara, Takashi

Publication type:

Article

Enrichment of HP1a on Drosophila Chromosome 4 Genes Creates an Alternate Chromatin Structure Critical for Regulation in this Heterochromatic Domain.

Published in:

PLoS Genetics, 2012, v. 8, n. 9, p. 1, doi. 10.1371/journal.pgen.1002954

By:

Riddle, Nicole C.;
Jung, Youngsook L.;
Gu, Tingting;
Alekseyenko, Artyom A.;
Asker, Dalal;
Hongxing Gui;
Kharchenko, Peter V.;
Minoda, Aki;
Plachetka, Annette;
Schwartz, Yuri B.;
Tolstorukov, Michael Y.;
Kuroda, Mitzi I.;
Pirrotta, Vincenzo;
Karpen, Gary H.;
Park, Peter J.;
Elgin, Sarah C. R.

Publication type:

Article

Sequence-Specific Targeting of Dosage Compensation in Drosophila Favors an Active Chromatin Context.

Published in:

PLoS Genetics, 2012, v. 8, n. 4, p. 1, doi. 10.1371/journal.pgen.1002646

By:

Alekseyenko, Artyom A.;
Ho, Joshua W. K.;
Shouyong Peng;
Gelbart, Marnie;
Tolstorukov, Michael Y.;
Plachetka, Annette;
Kharchenko, Peter V.;
Jung, Youngsook L.;
Gorchakov, Andrey A.;
Larschan, Erica;
Tingting Gu;
Minoda, Aki;
Riddle, Nicole C.;
Schwartz, Yuri B.;
Elgin, Sarah C. R.;
Karpen, Gary H.;
Pirrotta, Vincenzo;
Kuroda, Mitzi I.;
Park, Peter J.

Publication type:

Article