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Cytosolic nucleic acid sensors and interferon beta-1 activation drive radiation-induced antitumour immune effects in human pancreatic cancer cells.
- Published in:
- Frontiers in Immunology, 2024, p. 1, doi. 10.3389/fimmu.2024.1286942
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- Article
The SPOC domain is a phosphoserine binding module that bridges transcription machinery with co- and post-transcriptional regulators.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-35853-1
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- Article
Disintegration of the NuRD Complex in Primary Human Muscle Stem Cells in Critical Illness Myopathy.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 3, p. 2772, doi. 10.3390/ijms24032772
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- Article
Rapid Inflammasome Activation Is Attenuated in Post-Myocardial Infarction Monocytes.
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- Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.857455
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- Article
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.
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- Nucleic Acids Research, 2017, v. 45, n. W1, p. W560, doi. 10.1093/nar/gkx409
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- Article
RCAS: an RNA centric annotation system for transcriptome-wide regions of interest.
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- Nucleic Acids Research, 2017, v. 45, n. 10, p. 1, doi. 10.1093/nar/gkx120
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- Article
DoRiNA 2.0—upgrading the doRiNA database of RNA interactions in post-transcriptional regulation.
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- Nucleic Acids Research, 2015, v. 43, n. D1, p. D160, doi. 10.1093/nar/gku1180
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- Article
PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26360-2
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- Article
Transcriptional repression of NFKBIA triggers constitutive IKK‐ and proteasome‐independent p65/RelA activation in senescence.
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- EMBO Journal, 2021, v. 40, n. 6, p. 1, doi. 10.15252/embj.2019104296
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- Article
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.
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- Nature Genetics, 2009, v. 41, n. 5, p. 553, doi. 10.1038/ng.375
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- Article
PiGx: reproducible genomics analysis pipelines with GNU Guix.
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- GigaScience, 2018, v. 7, n. 12, p. N.PAG, doi. 10.1093/gigascience/giy123
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- Article
Pathogenic mutations of human phosphorylation sites affect protein–protein interactions.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46794-8
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- Article
Transcriptional reprogramming by mutated IRF4 in lymphoma.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-41954-8
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- Article
The SPOC proteins DIDO3 and PHF3 co-regulate gene expression and neuronal differentiation.
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- Nature Communications, 2023, p. 1, doi. 10.1038/s41467-023-43724-y
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- Article
Identifying tumor cells at the single-cell level using machine learning.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02683-1
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- Article
Dissecting the Transcriptional Regulatory Properties of Human Chromosome 16 Highly Conserved Non-Coding Regions.
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- PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0024824
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- Article
scMaui: a widely applicable deep learning framework for single-cell multiomics integration in the presence of batch effects and missing data.
- Published in:
- BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05880-w
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- Article
Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program.
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- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-12894-z
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- Article
Global identification of functional microRNA-mRNA interactions in Drosophila.
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- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-09586-z
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- Article
Multi-Omics Alleviates the Limitations of Panel Sequencing for Cancer Drug Response Prediction.
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- Cancers, 2022, v. 14, n. 22, p. 5604, doi. 10.3390/cancers14225604
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- Article
The IκB kinase complex is a regulator of mRNA stability.
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- EMBO Journal, 2018, v. 37, n. 24, p. N.PAG, doi. 10.15252/embj.201798658
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- Article
An optimized algorithm for detecting and annotating regional differential methylation.
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- BMC Bioinformatics, 2013, v. 14, n. Suppl 5, p. 1, doi. 10.1186/1471-2105-14-S5-S10
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- Article
Translog, a web browser for studying the expression divergence of homologous genes.
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- BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S1-S59
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- Article
RNA polymerase II primes Polycomb-repressed developmental genes throughout terminal neuronal differentiation.
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- Molecular Systems Biology, 2017, v. 13, n. 10, p. 1, doi. 10.15252/msb.20177754
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- Article
methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles.
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- Genome Biology, 2012, v. 13, n. 10, p. 1, doi. 10.1186/gb-2012-13-10-R87
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- Article
Differential Evolution of the 13 Atlantic Salmon Hox Clusters.
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- Molecular Biology & Evolution, 2008, v. 25, n. 7, p. 1333, doi. 10.1093/molbev/msn097
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- Article
Zebrafish enhancer detection (ZED) vector: A new tool to facilitate transgenesis and the functional analysis of cis-regulatory regions in zebrafish.
- Published in:
- Developmental Dynamics, 2009, v. 238, n. 9, p. 2409, doi. 10.1002/dvdy.22051
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- Article
Predicting lethal courses in critically ill COVID-19 patients using a machine learning model trained on patients with non-COVID-19 viral pneumonia.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-92475-7
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- Article
Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation.
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- Nature, 2015, v. 520, n. 7546, p. 243, doi. 10.1038/nature14176
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- Article
Two independent transcription initiation codes overlap on vertebrate core promoters.
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- Nature, 2014, v. 507, n. 7492, p. 381, doi. 10.1038/nature12974
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- Article
HOT or not: examining the basis of high-occupancy target regions.
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- Nucleic Acids Research, 2019, v. 47, n. 11, p. 5735, doi. 10.1093/nar/gkz460
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- Article
Alternative 3′ UTRs direct localization of functionally diverse protein isoforms in neuronal compartments.
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- Nucleic Acids Research, 2019, v. 47, n. 5, p. 2560, doi. 10.1093/nar/gky1270
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- Article
Deciphering human ribonucleoprotein regulatory networks.
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- Nucleic Acids Research, 2019, v. 47, n. 2, p. 570, doi. 10.1093/nar/gky1185
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- Article
RNA localization is a key determinant of neurite-enriched proteome.
- Published in:
- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00690-6
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- Article
Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection.
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- Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1329-5
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- Article
Base-Pair Resolution DNA Methylation Sequencing Reveals Profoundly Divergent Epigenetic Landscapes in Acute Myeloid Leukemia.
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- PLoS Genetics, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pgen.1002781
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- Article
Complex Loci in Human and Mouse Genomes.
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- PLoS Genetics, 2006, v. 2, n. 4, p. e47, doi. 10.1371/journal.pgen.0020047
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- Publication type:
- Article
Cytosolic nucleic acid sensors and interferon beta-1 activation drive radiation-induced anti-tumour immune effects in human pancreatic cancer cells.
- Published in:
- Frontiers in Immunology, 2024, p. 01, doi. 10.3389/fimmu.2024.1286942
- By:
- Publication type:
- Article
genomation: a toolkit to summarize, annotate and visualize genomic intervals.
- Published in:
- Bioinformatics, 2015, v. 31, n. 7, p. 1127, doi. 10.1093/bioinformatics/btu775
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- Article
The conserved histone chaperone LIN‐53 is required for normal lifespan and maintenance of muscle integrity in Caenorhabditis elegans.
- Published in:
- Aging Cell, 2019, v. 18, n. 6, p. N.PAG, doi. 10.1111/acel.13012
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- Article
Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-20064-9
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- Article
Deep learning for genomics using Janggu.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17155-y
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- Article