Works by Aitken, Karen

Results: 49

Modulation of DNA methylation and phenotypic switching in Smooth Muscle Cells by the extracellular matrix microenvironment.

Published in:

2013

By:

Jia-Xin Jiang;
Aitken, Karen J.;
Kirwan, Tyler P.;
Zhang, Nicole D.;
Shuye Pu;
Bägli, Darius J.

Publication type:

Conference Paper/Materials

Estrogen induced downregulation of gene expression and cell biological processes critical for genital tubercle formation via DNA methylation.

Published in:

2013

By:

Jia-Xin Jiang;
Aitken, Karen J.;
Kirwan, Tyler P.;
Hopyan, Sevan;
Bägli, Darius J.

Publication type:

Conference Paper/Materials

Acetazolamide potentiates the anti-tumor potential of HDACi, MS-275, in neuroblastoma.

Published in:

2017

By:

Mokhtari, Reza Bayat;
Baluch, Narges;
Hon Tsui, Micky Ka;
Kumar, Sushil;
Homayouni, Tina S.;
Aitken, Karen;
Das, Bikul;
Baruchel, Sylvain;
Yeger, Herman;
Bayat Mokhtari, Reza;
Ka Hon Tsui, Micky;
S Homayouni, Tina

Publication type:

journal article

Insertion/Deletion Polymorphisms in the ΔNp63 Promoter Are a Risk Factor for Bladder Exstrophy Epispadias Complex.

Published in:

PLoS Genetics, 2012, v. 8, n. 12, p. 1, doi. 10.1371/journal.pgen.1003070

By:

Wilkins, Simon;
Ke Wei Zhang;
Mahfuz, Istiak;
Quantin, Renaud;
D'Cruz, Nancy;
Hutson, John;
Ee, Michael;
Bagli, Darius;
Aitken, Karen;
Fion Nga-Yin Fong;
Ng, Patrick Kwok-Shing;
Tsui, Stephen Kwok-Wing;
Fung, Wendy Yin-Wan;
Banu, Tahmina;
Thakre, Atul;
Johar, Kaid;
Jaureguizar, Enrique;
Long Li;
Wei Cheng

Publication type:

Article

Resistance mechanisms and expression of disease resistancerelated genes in sugarcane (Sacchrum officinarum) to Sporisorium scitamineum infection.

Published in:

Functional Plant Biology, 2021, v. 48, n. 12, p. 1302, doi. 10.1071/FP21122

By:

Hidayah, Nurul;
McNeil, Meredith;
Jingchuan Li;
Bhuiyan, Shamsul;
Galea, Victor;
Aitken, Karen

Publication type:

Article

Factors affecting the germination of teliospores of Sporisorium scitamineum and the development of sugarcane smut in the field.

Published in:

Journal of Phytopathology, 2024, v. 172, n. 2, p. 1, doi. 10.1111/jph.13307

By:

Hidayah, Nurul;
Bhuiyan, Shamsul A.;
Aitken, Karen;
Galea, Victor

Publication type:

Article

Using quantitative PCR with retrotransposon-based insertion polymorphisms as markers in sugarcane.

Published in:

Journal of Experimental Botany, 2015, v. 66, n. 14, p. 4239, doi. 10.1093/jxb/erv283

By:

Metcalfe, Cushla J.;
Oliveira, Sarah G.;
Gaiarsa, Jonas W.;
Aitken, Karen S.;
Carneiro, Monalisa S.;
Zatti, Fernanda;
Van Sluys, Marie-Anne

Publication type:

Article

RNAseq Transcriptional Profiling following Whip Development in Sugarcane Smut Disease.

Published in:

PLoS ONE, 2016, v. 11, n. 9, p. 1, doi. 10.1371/journal.pone.0162237

By:

Schaker, Patricia D. C.;
Palhares, Alessandra C.;
Taniguti, Lucas M.;
Peters, Leila P.;
Creste, Silvana;
Aitken, Karen S.;
Van Sluys, Marie-Anne;
Kitajima, João P.;
Vieira, Maria L. C.;
Monteiro-Vitorello, Claudia B.

Publication type:

Article

Uropathogenic E.coli (UPEC) Infection Induces Proliferation through Enhancer of Zeste Homologue 2 (EZH2).

Published in:

PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0149118

By:

Ting, Kenneth;
Aitken, Karen J.;
Penna, Frank;
Samiei, Alaleh Najdi;
Sidler, Martin;
Jiang, Jia-Xin;
Ibrahim, Fadi;
Tolg, Cornelia;
Delgado-Olguin, Paul;
Rosenblum, Norman;
Bägli, Darius J.

Publication type:

Article

A linkage disequilibrium-based approach to position unmapped SNPs in crop species.

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-08116-w

By:

Yadav, Seema;
Ross, Elizabeth M.;
Aitken, Karen S.;
Hickey, Lee T.;
Powell, Owen;
Wei, Xianming;
Voss-Fels, Kai P.;
Hayes, Ben J.

Publication type:

Article

Genomic Selection in Sugarcane: Current Status and Future Prospects.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.708233

By:

Mahadevaiah, Channappa;
Appunu, Chinnaswamy;
Aitken, Karen;
Suresha, Giriyapura Shivalingamurthy;
Vignesh, Palanisamy;
Mahadeva Swamy, Huskur Kumaraswamy;
Valarmathi, Ramanathan;
Hemaprabha, Govind;
Alagarasan, Ganesh;
Ram, Bakshi

Publication type:

Article

Analysis of the resistance mechanisms in sugarcane during Sporisorium scitamineum infection using RNA-seq and microscopy.

Published in:

PLoS ONE, 2018, v. 13, n. 5, p. 1, doi. 10.1371/journal.pone.0197840

By:

McNeil, Meredith D.;
Bhuiyan, Shamsul A.;
Berkman, Paul J.;
Croft, Barry J.;
Aitken, Karen S.

Publication type:

Article

Comparative mapping in the Poaceae family reveals translocations in the complex polyploid genome of sugarcane.

Published in:

BMC Plant Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/s12870-014-0190-x

By:

Aitken, Karen S.;
McNeil, Meredith D.;
Berkman, Paul J.;
Hermann, Scott;
Kilian, Andrzej;
Bundock, Peter C.;
Jingchuan Li

Publication type:

Article

Matrix metalloproteinase-7 and epidermal growth factor receptor mediate hypoxia-induced extracellular signal-regulated kinase 1/2 mitogen-activated protein kinase activation and subsequent proliferation in bladder smooth muscle cells.

Published in:

In Vitro Cellular & Developmental Biology Animal, 2006, v. 42, n. 5/6, p. 124, doi. 10.1290/0510070.1

By:

Sabha, Nesrin;
Aitken, Karen;
Lorenzo, Armando;
Szybowska, Marta;
Jairath, Ashish;
Bägli, Darius

Publication type:

Article

Do youth with type 1 diabetes exercise safely? A focus on patient practices and glycemic outcomes.

Published in:

Pediatric Diabetes, 2017, v. 18, n. 5, p. 367, doi. 10.1111/pedi.12402

By:

Roberts, Alissa J.;
Yi‐Frazier, Joyce P.;
Aitken, Karen E.;
Mitrovich, Connor A.;
Pascual, Michael F.;
Taplin, Craig E.

Publication type:

Article

Flow cytometric characterisation of the complex polyploid genome of Saccharum officinarum and modern sugarcane cultivars.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-55652-3

By:

Metcalfe, Cushla J.;
Li, Jingchuan;
Giorgi, Debora;
Doležel, Jaroslav;
Piperidis, Nathalie;
Aitken, Karen S.

Publication type:

Article

Effects of doxycycline on voiding behaviour of rats with bladder outlet obstruction.

Published in:

BJU International, 2009, v. 103, n. 4, p. 537, doi. 10.1111/j.1464-410X.2008.08131.x

By:

Elkelini, Mohamed S.;
Aitken, Karen;
Bagli, Darius J.;
Hassouna, Magdy M.

Publication type:

Article

The tyrosine kinase p56<sup>lck</sup> is essential in coxsackievirus B3-mediated heart disease.

Published in:

Nature Medicine, 2000, v. 6, n. 4, p. 429, doi. 10.1038/74689

By:

Liu, Peter;
Aitken, Karen;
Kong, Young-Yun;
Opavsky, Mary Anne;
Martino, Tammy;
Dawood, Fayez;
Wen, Wen-Hu;
Kozieradzki, Ivona;
Bachmaier, Kurt;
Straus, David;
Mak, Tak W.;
Penninger, Josef M.

Publication type:

Article

A comprehensive genetic map of sugarcane that provides enhanced map coverage and integrates high-throughput Diversity Array Technology (DArT) markers.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-152

By:

Aitken, Karen S.;
McNeil, Meredith D.;
Hermann, Scott;
Bundock, Peter C.;
Kilian, Andrzej;
Heller-Uszynska, Katarzyna;
Henry, Robert J.;
Jingchuan Li

Publication type:

Article

Combining genomic selection with genome-wide association analysis identified a large-effect QTL and improved selection for red rot resistance in sugarcane.

Published in:

Frontiers in Plant Science, 2022, v. 31, p. 1, doi. 10.3389/fpls.2022.1021182

By:

O’Connell, Anthony;
Deo, Jasmin;
Deomano, Emily;
Xianming Wei;
Jackson, Phillip;
Aitken, Karen S.;
Manimekalai, Ramaswamy;
Mohanraj, Krishnasamy;
Hemaprabha, Govinda;
Ram, Bakshi;
Viswanathan, Rasappa;
Lakshmanan, Prakash

Publication type:

Article

Isolation and sequencing of a single copy of an introgressed chromosome from a complex genome for gene and SNP identification.

Published in:

Theoretical & Applied Genetics, 2022, v. 135, n. 4, p. 1279, doi. 10.1007/s00122-022-04030-1

By:

Metcalfe, Cushla J.;
Li, Jingchuan;
Zheng, Bangyou;
Stiller, Jiri;
Healey, Adam;
Piperidis, Nathalie;
Aitken, Karen S.

Publication type:

Article

Improved genomic prediction of clonal performance in sugarcane by exploiting non-additive genetic effects.

Published in:

Theoretical & Applied Genetics, 2021, v. 134, n. 7, p. 2235, doi. 10.1007/s00122-021-03822-1

By:

Yadav, Seema;
Wei, Xianming;
Joyce, Priya;
Atkin, Felicity;
Deomano, Emily;
Sun, Yue;
Nguyen, Loan T.;
Ross, Elizabeth M.;
Cavallaro, Tony;
Aitken, Karen S.;
Hayes, Ben J.;
Voss-Fels, Kai P.

Publication type:

Article

Strategies and considerations for implementing genomic selection to improve traits with additive and non-additive genetic architectures in sugarcane breeding.

Published in:

Theoretical & Applied Genetics, 2021, v. 134, n. 5, p. 1493, doi. 10.1007/s00122-021-03785-3

By:

Voss-Fels, Kai P.;
Wei, Xianming;
Ross, Elizabeth M.;
Frisch, Matthias;
Aitken, Karen S.;
Cooper, Mark;
Hayes, Ben J.

Publication type:

Article

Accuracy of genomic prediction of complex traits in sugarcane.

Published in:

Theoretical & Applied Genetics, 2021, v. 134, n. 5, p. 1455, doi. 10.1007/s00122-021-03782-6

By:

Hayes, Ben J.;
Wei, Xianming;
Joyce, Priya;
Atkin, Felicity;
Deomano, Emily;
Yue, Jenny;
Nguyen, Loan;
Ross, Elizabeth M.;
Cavallaro, Tony;
Aitken, Karen S.;
Voss-Fels, Kai P.

Publication type:

Article

Bayesian estimation of marker dosage in sugarcane and other autopolyploids.

Published in:

Theoretical & Applied Genetics, 2010, v. 120, n. 7, p. 1653, doi. 10.1007/s00122-010-1283-z

By:

Baker, Peter;
Jackson, Phillip;
Aitken, Karen

Publication type:

Article

Role of signal transducer and activator of transcription 3 (STAT3) in stretch injury to bladder smooth muscle cells.

Published in:

Cell & Tissue Research, 2006, v. 326, n. 1, p. 149, doi. 10.1007/s00441-006-0204-6

By:

Halachmi, Sarel;
Aitken, Karen J.;
Szybowska, Marta;
Sabha, Nesrin;
Dessouki, Shariff;
Lorenzo, Armando;
Tse, Derrick;
Bagli, Darius J.

Publication type:

Article

A high-resolution genetic map of the cereal crown rot pathogen Fusarium pseudograminearum provides a near-complete genome assembly.

Published in:

Molecular Plant Pathology, 2018, v. 19, n. 1, p. 217, doi. 10.1111/mpp.12519

By:

Gardiner, Donald M.;
Benfield, Aurelie H.;
Stiller, Jiri;
Stephen, Stuart;
Aitken, Karen;
Liu, Chunji;
Kazan, Kemal

Publication type:

Article

A mosaic monoploid reference sequence for the highly complex genome of sugarcane.

Published in:

Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-05051-5

By:

Garsmeur, Olivier;
Droc, Gaetan;
Antonise, Rudie;
Grimwood, Jane;
Potier, Bernard;
Aitken, Karen;
Jenkins, Jerry;
Martin, Guillaume;
Charron, Carine;
Hervouet, Catherine;
Costet, Laurent;
Yahiaoui, Nabila;
Healey, Adam;
Sims, David;
Cherukuri, Yesesri;
Sreedasyam, Avinash;
Kilian, Andrzej;
Chan, Agnes;
Van Sluys, Marie-Anne;
Swaminathan, Kankshita

Publication type:

Article

Spontaneous urinary bladder regeneration after subtotal cystectomy increases YAP/WWTR1 signaling and downstream BDNF expression: Implications for smooth muscle injury responses.

Published in:

PLoS ONE, 2023, v. 18, n. 7, p. 1, doi. 10.1371/journal.pone.0287205

By:

Aitken, Karen J.;
Yadav, Priyank;
Sidler, Martin;
Thanabalasingam, Thenuka;
Ahmed, Tabina;
Aggarwal, Prateek;
Yip, Shing Tai;
Jeffrey, Nefateri;
Jiang, Jia-Xin;
Siebenaller, Aliza;
Sotiropoulos, Chris;
Huang, Ryan;
Le, David Minh Quynh;
Delgado-Olguin, Paul;
Bagli, Darius

Publication type:

Article

Associations between DNA markers and resistance to diseases in sugarcane and effects of population substructure.

Published in:

Theoretical & Applied Genetics, 2006, v. 114, n. 1, p. 155, doi. 10.1007/s00122-006-0418-8

By:

Xianming Wei;
Jackson, Phillip;
McIntyre, C.;
Aitken, Karen;
Croft, Barry

Publication type:

Article

Persistent myopathy despite release of partial obstruction: in vivo reversal of dysfunction and transcriptional responses using rapamycin.

Published in:

FASEB Journal, 2020, v. 34, n. 3, p. 3594, doi. 10.1096/fj.201900547RR

By:

Schröder, Annette;
Aitken, Karen J.;
Jiang, Jia‐Xin;
Sidler, Martin;
Tölg, Cornelia;
Siebenaller, Aliza;
Jeffrey, Nefateri;
Kirwan, Tyler;
Leslie, Bruno;
Wu, Changhao;
Weksberg, Rosanna;
Delgado‐Olguin, Paul;
Bägli, Darius J.

Publication type:

Article

Local receptors as novel regulators for peripheral clock expression.

Published in:

FASEB Journal, 2014, v. 28, n. 11, p. 4610, doi. 10.1096/fj.13-243295

By:

Changhao Wu;
Guiping Sui;
Archer, Simon N.;
Sassone-Corsi, Paolo;
Aitken, Karen;
Bagli, Darius;
Ying Chen

Publication type:

Article

View From the Chalkboard.

Published in:

Reading Teacher, 2013, v. 66, n. 5, p. 390

By:

Aitken, Karen;
Dewey, Beth

Publication type:

Article

A perfect storm: ploidy and preadaptation facilitate Saccharum spontaneum escape and invasion in the Republic of Panama.

Published in:

Biological Invasions, 2021, v. 23, n. 4, p. 1101, doi. 10.1007/s10530-020-02421-3

By:

Saltonstall, Kristin;
Bonnett, Graham D.;
Aitken, Karen S.

Publication type:

Article

CD45 is a JAK phosphatase and negatively regulates cytokine receptor signalling.

Published in:

Nature, 2001, v. 409, n. 6818, p. 349, doi. 10.1038/35053086

By:

Irie-Sasaki, Junko;
Sasaki, Takenhiko;
Matsumoto, Wataru;
Opavsky, Anne;
Cheng, Mary;
Welstead, Grant;
Griffiths, Emily;
Krawcyzk, Connie;
Richardson, Christopher D.;
Aitken, Karen;
Iscove, Norman;
Koretzky, Gary;
Johnson, Pauline;
Liu, Peter;
Rothstein, David M.;
Penninger, Josef M.

Publication type:

Article

A New Approach for Copy Number Estimation in Polyploids.

Published in:

Journal of Heredity, 2010, v. 101, n. 4, p. 521, doi. 10.1093/jhered/esq034

By:

GEORGE, ANDREW W.;
AITKEN, KAREN

Publication type:

Article

Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing.

Published in:

Plant Biotechnology Journal, 2009, v. 7, n. 4, p. 347, doi. 10.1111/j.1467-7652.2009.00401.x

By:

Bundock, Peter C.;
Eliott, Frances G.;
Ablett, Gary;
Benson, Adam D.;
Casu, Rosanne E.;
Aitken, Karen S.;
Henry, Robert J.

Publication type:

Article

Optimising clonal performance in sugarcane: leveraging non-additive effects via mate-allocation strategies.

Published in:

Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1260517

By:

Yadav, Seema;
Ross, Elizabeth M.;
Xianming Wei;
Powell, Owen;
Hivert, Valentin;
Hickey, Lee T.;
Atkin, Felicity;
Deomano, Emily;
Aitken, Karen S.;
Voss-Fels, Kai P.;
Hayes, Ben J.

Publication type:

Article

DNA Marker Transmission and Linkage Analysis in Populations Derived from a Sugarcane (Saccharum spp.) x Erianthus arundinaceus Hybrid.

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0128865

By:

Chen, Jian-wen;
Lao, Fang-ye;
Chen, Xi-wen;
Deng, Hai-hua;
Liu, Rui;
He, Hui-yi;
Fu, Cheng;
Chen, Yong-sheng;
Liu, Fu-ye;
Li, Qi-wei;
Jackson, Phillip;
Aitken, Karen

Publication type:

Article

Complete Genome Sequence of Sporisorium scitamineum and Biotrophic Interaction Transcriptome with Sugarcane.

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0129318

By:

Taniguti, Lucas M.;
Schaker, Patricia D. C.;
Benevenuto, Juliana;
Peters, Leila P.;
Carvalho, Giselle;
Palhares, Alessandra;
Quecine, Maria C.;
Nunes, Filipe R. S.;
Kmit, Maria C. P.;
Wai, Alvan;
Hausner, Georg;
Aitken, Karen S.;
Berkman, Paul J.;
Fraser, James A.;
Moolhuijzen, Paula M.;
Coutinho, Luiz L.;
Creste, Silvana;
Vieira, Maria L. C.;
Kitajima, João P.;
Monteiro-Vitorello, Claudia B.

Publication type:

Article

Phenotypic Switching Induced by Damaged Matrix Is Associated with DNA Methyltransferase 3A (DNMT3A) Activity and Nuclear Localization in Smooth Muscle Cells (SMC).

Published in:

PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0069089

By:

Jiang, Jia-Xin;
Aitken, Karen J.;
Sotiropolous, Chris;
Kirwan, Tyler;
Panchal, Trupti;
Zhang, Nicole;
Pu, Shuye;
Wodak, Shoshana;
Tolg, Cornelia;
Bägli, Darius J.

Publication type:

Article

Pathologic Bladder Microenvironment Attenuates Smooth Muscle Differentiation of Skin Derived Precursor Cells: Implications for Tissue Regeneration.

Published in:

PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0059413

By:

Tolg, Cornelia;
Ahsan, Alya;
Dworski, Shaalee;
Kirwan, Tyler;
Yu, Jeffery;
Aitken, Karen;
Bägli, Darius Jehan

Publication type:

Article

Genomic prediction of sugar content and cane yield in sugar cane clones in different stages of selection in a breeding program, with and without pedigree information.

Published in:

Molecular Breeding, 2020, v. 40, n. 4, p. 1, doi. 10.1007/s11032-020-01120-0

By:

Deomano, Emily;
Jackson, Phillip;
Wei, Xianming;
Aitken, Karen;
Kota, Raja;
Pérez-Rodríguez, Paulino

Publication type:

Article

Diversity Arrays Technology effectively reveals DNA polymorphism in a large and complex genome of sugarcane.

Published in:

Molecular Breeding, 2011, v. 28, n. 1, p. 37, doi. 10.1007/s11032-010-9460-y

By:

Heller-Uszynska, Katarzyna;
Uszynski, Grzegorz;
Huttner, Eric;
Evers, Margaret;
Carlig, Jason;
Caig, Vanessa;
Aitken, Karen;
Jackson, Phillip;
Piperidis, George;
Cox, Mike;
Gilmour, Ross;
D'Hont, Angelique;
Butterfield, Mike;
Glaszmann, Jean-Christophe;
Kilian, Andrzej

Publication type:

Article

Conversion of AFLP markers to high-throughput markers in a complex polyploid, sugarcane.

Published in:

Molecular Breeding, 2011, v. 27, n. 3, p. 395, doi. 10.1007/s11032-010-9441-1

By:

McNeil, Meredith;
Hermann, Scott;
Jackson, Phillip;
Aitken, Karen

Publication type:

Article

Comparative genetics in sugarcane enables structured map enhancement and validation of marker-trait associations.

Published in:

Molecular Breeding, 2008, v. 21, n. 2, p. 233, doi. 10.1007/s11032-007-9124-8

By:

Piperidis, Nathalie;
Jackson, Phillip;
D'Hont, Angelique;
Besse, Pascale;
Hoarau, Jean-Yves;
Courtois, Brigitte;
Aitken, Karen;
McIntyre, C.

Publication type:

Article

Worldwide Genetic Diversity of the Wild Species Saccharum spontaneum and Level of Diversity Captured within Sugarcane Breeding Programs.

Published in:

Crop Science, 2018, v. 58, n. 1, p. 218, doi. 10.2135/cropsci2017.06.0339

By:

Aitken, Karen;
Jingchuan Li;
Piperidis, George;
Cai Qing;
Fan Yuanhong;
Jackson, Phillip

Publication type:

Article

Evaluation of Sugarcane X Saccharum spontaneum Progeny for Biomass Composition and Yield Components.

Published in:

Crop Science, 2008, v. 48, n. 3, p. 951, doi. 10.2135/cropsci2007.10.0555

By:

Li-Ping Wang;
Jackson, Phillip A.;
Xin Lu;
Yuan-Hong Fan;
Foreman, John W.;
Xue-Kuan Chen;
Hai-Hua Deng;
Cheng Fu;
Li Ma;
Aitken, Karen S.

Publication type:

Article

Accelerating Genetic Gain in Sugarcane Breeding Using Genomic Selection.

Published in:

Agronomy, 2020, v. 10, n. 4, p. 585, doi. 10.3390/agronomy10040585

By:

Yadav, Seema;
Jackson, Phillip;
Wei, Xianming;
Ross, Elizabeth M.;
Aitken, Karen;
Deomano, Emily;
Atkin, Felicity;
Hayes, Ben J.;
Voss-Fels, Kai P.

Publication type:

Article