Works by Ainong Shi

Results: 102

Genome-Wide Association Study for Drought Tolerance in Cowpea (Vigna unguiculata (L.) Walp.) at Seedling Stage Using a Whole Genome Resequencing Approach.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 12, p. 5478, doi. 10.3390/ijms26125478

By:

Ravelombola, Waltram;
Xiong, Haizheng;
Bhattarai, Gehendra;
Manley, Aurora;
Cason, John;
Pham, Hanh;
Zia, Bazgha;
Mou, Beiquan;
Shi, Ainong

Publication type:

Article

Genome wide association study of Fusarium wilt resistance in Spinacia turkestanica.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-98932-x

By:

Gyawali, Sanjaya;
Bhattarai, Gehendra;
Correll, James C.;
Shi, Ainong;
du Toit, Lindsey J.

Publication type:

Article

Decades of Genetic Research on Soybean mosaic virus Resistance in Soybean.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 6, p. N.PAG, doi. 10.3390/v14061122

By:

Usovsky, Mariola;
Chen, Pengyin;
Li, Dexiao;
Wang, Aiming;
Shi, Ainong;
Zheng, Cuiming;
Shakiba, Ehsan;
Lee, Dongho;
Canella Vieira, Caio;
Lee, Yi Chen;
Wu, Chengjun;
Cervantez, Innan;
Dong, Dekun

Publication type:

Article

Genome-Wide Association Study and Genomic Prediction for Soybean Cyst Nematode Resistance in USDA Common Bean (Phaseolus vulgaris) Core Collection.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.624156

By:

Shi, Ainong;
Gepts, Paul;
Song, Qijian;
Xiong, Haizheng;
Michaels, Thomas E.;
Chen, Senyu

Publication type:

Article

Genome Wide Association Studies in Multiple Spinach Breeding Populations Refine Downy Mildew Race 13 Resistance Genes.

Published in:

Frontiers in Plant Science, 2020, v. 11, p. N.PAG, doi. 10.3389/fpls.2020.563187

By:

Bhattarai, Gehendra;
Shi, Ainong;
Feng, Chunda;
Dhillon, Braham;
Mou, Beiquan;
Correll, James C.

Publication type:

Article

Genome-wide association study and genomic selection for tolerance of soybean biomass to soybean cyst nematode infestation.

Published in:

PLoS ONE, 2020, v. 15, n. 7, p. 1, doi. 10.1371/journal.pone.0235089

By:

Ravelombola, Waltram Second;
Qin, Jun;
Shi, Ainong;
Nice, Liana;
Bao, Yong;
Lorenz, Aaron;
Orf, James H.;
Young, Nevin D.;
Chen, Senyu

Publication type:

Article

Genome-wide association study and genomic selection for soybean chlorophyll content associated with soybean cyst nematode tolerance.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-6275-z

By:

Ravelombola, Waltram Second;
Qin, Jun;
Shi, Ainong;
Nice, Liana;
Bao, Yong;
Lorenz, Aaron;
Orf, James H.;
Young, Nevin D.;
Chen, Senyu

Publication type:

Article

Insights into nitrogen metabolism in the wild and cultivated lettuce as revealed by transcriptome and weighted gene co-expression network analysis.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-13954-z

By:

Kumar, Pawan;
Eriksen, Renee L.;
Simko, Ivan;
Shi, Ainong;
Mou, Beiquan

Publication type:

Article

Author Correction: Genome-wide simple sequence repeats (SSR) markers discovered from whole-genome sequence comparisons of multiple spinach accessions.

Published in:

2022

By:

Bhattarai, Gehendra;
Shi, Ainong;
Kandel, Devi R.;
Solís-Gracia, Nora;
da Silva, Jorge Alberto;
Avila, Carlos A.

Publication type:

Correction Notice

Genetic dissection of nitrogen induced changes in the shoot and root biomass of spinach.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-18134-7

By:

Joshi, Vijay;
Shi, Ainong;
Mishra, Amit Kumar;
Gill, Haramrit;
DiPiazza, James

Publication type:

Article

Genome Wide Association Study and Genomic Selection of Amino Acid Concentrations in Soybean Seeds.

Published in:

Frontiers in Plant Science, 2019, v. 10, p. 1, doi. 10.3389/fpls.2019.01445

By:

Qin, Jun;
Shi, Ainong;
Song, Qijian;
Li, Song;
Wang, Fengmin;
Cao, Yinghao;
Ravelombola, Waltram;
Song, Qi;
Yang, Chunyan;
Zhang, Mengchen

Publication type:

Article

Differentiation of Two Pathogens of Powdery Mildew Disease in Flowering Dogwood ( Cornus florida) by PCR-mediated Method Based on ITS Sequences.

Published in:

Journal of Phytopathology, 2009, v. 157, n. 5, p. 274, doi. 10.1111/j.1439-0434.2008.01480.x

By:

SHI, AINONG;
KANTARTZI, STELLA K.;
MMBAGA, MARGARET T.;
CHEN, PENGYIN

Publication type:

Article

Isolation of Resistance Gene Analogues from Flowering Dogwood ( Cornus florida L.).

Published in:

Journal of Phytopathology, 2008, v. 156, n. 11/12, p. 742, doi. 10.1111/j.1439-0434.2008.01444.x

By:

Ainong Shi;
Kantartzi, Stella K.;
Mmbaga, Margaret;
Chen, Pengyin

Publication type:

Article

Genetic Diversity and Population Structure of Cowpea (Vigna unguiculata L. Walp).

Published in:

PLoS ONE, 2016, v. 11, n. 8, p. 1, doi. 10.1371/journal.pone.0160941

By:

Xiong, Haizheng;
Shi, Ainong;
Mou, Beiquan;
Qin, Jun;
Motes, Dennis;
Lu, Weiguo;
Ma, Jianbing;
Weng, Yuejin;
Yang, Wei;
Wu, Dianxing

Publication type:

Article

Population Structure of Peronospora effusa in the Southwestern United States.

Published in:

PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0148385

By:

Lyon, Rebecca;
Correll, James;
Feng, Chunda;
Bluhm, Burt;
Shrestha, Sandesh;
Shi, Ainong;
Lamour, Kurt

Publication type:

Article

Genome-Wide Association Study and Genomic Prediction of Fusarium Wilt Resistance in Common Bean Core Collection.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 20, p. 15300, doi. 10.3390/ijms242015300

By:

Chiwina, Kenani;
Xiong, Haizheng;
Bhattarai, Gehendra;
Dickson, Ryan William;
Phiri, Theresa Makawa;
Chen, Yilin;
Alatawi, Ibtisam;
Dean, Derek;
Joshi, Neelendra K.;
Chen, Yuyan;
Riaz, Awais;
Gepts, Paul;
Brick, Mark;
Byrne, Patrick F.;
Schwartz, Howard;
Ogg, James B.;
Otto, Kristin;
Fall, Amy;
Gilbert, Jeremy;
Shi, Ainong

Publication type:

Article

Genetic Architecture of Salt Tolerance in Cowpea (Vigna unguiculata (L.) Walp.) at Seedling Stage Using a Whole Genome Resequencing Approach.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 20, p. 15281, doi. 10.3390/ijms242015281

By:

Ravelombola, Waltram;
Dong, Lindgi;
Barickman, Thomas Casey;
Xiong, Haizheng;
Manley, Aurora;
Cason, John;
Pham, Hanh;
Zia, Bazgha;
Mou, Beiquan;
Shi, Ainong

Publication type:

Article

Genetic architecture of salt tolerance in a Multi-Parent Advanced Generation Inter-Cross (MAGIC) cowpea population.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08332-y

By:

Ravelombola, Waltram;
Shi, Ainong;
Huynh, Bao-Lam;
Qin, Jun;
Xiong, Haizheng;
Manley, Aurora;
Dong, Lingdi;
Olaoye, Dotun;
Bhattarai, Gehendra;
Zia, Bazgha;
Alshaya, Huda;
Alatawi, Ibtisam

Publication type:

Article

Erysiphe abbreviata on cherry bark oak--morphology, phylogeny and taxonomy.

Published in:

Mycologia, 2007, v. 99, n. 5, p. 655, doi. 10.1080/15572536.2007.11832530

By:

Braun, Uwe;
Ainong Shi;
Mmbaga, Margaret;
Takamatsu, Susumu;
Divarangkoon, Rangsi;
Pengyin Chen

Publication type:

Article

Proteomics Analysis Indicates Greater Abundance of Proteins Involved in Major Metabolic Pathways in Lactuca sativa cv. Salinas than Lactuca serriola Accession US96UC23.

Published in:

Proteomics, 2020, v. 20, n. 19/20, p. 1, doi. 10.1002/pmic.201900420

By:

Adhikari, Neil D.;
Eriksen, Renée L.;
Shi, Ainong;
Mou, Beiquan

Publication type:

Article

Identification of Candidate Genes and Genomic Selection for Seed Protein in Soybean Breeding Pipeline.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.882732

By:

Qin, Jun;
Wang, Fengmin;
Zhao, Qingsong;
Shi, Ainong;
Zhao, Tiantian;
Song, Qijian;
Ravelombola, Waltram;
An, Hongzhou;
Yan, Long;
Yang, Chunyan;
Zhang, Mengchen

Publication type:

Article

Genome-Wide Association Study and Genomic Prediction for Bacterial Wilt Resistance in Common Bean (Phaseolus vulgaris) Core Collection.

Published in:

Frontiers in Genetics, 2022, p. 1, doi. 10.3389/fgene.2022.853114

By:

Zia, Bazgha;
Shi, Ainong;
Olaoye, Dotun;
Xiong, Haizheng;
Ravelombola, Waltram;
Gepts, Paul;
Schwartz, Howard F.;
Brick, Mark A.;
Otto, Kristen;
Ogg, Barry;
Chen, Senyu

Publication type:

Article

Genetic Diversity, Structure, and Selective Sweeps in Spinacia turkestanica Associated With the Domestication of Cultivated Spinach.

Published in:

Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.740437

By:

Gyawali, Sanjaya;
Bhattarai, Gehendra;
Shi, Ainong;
Kik, Chris;
du Toit, Lindsey J.

Publication type:

Article

Genetic diversity and population structure analysis of spinach by single-nucleotide polymorphisms identified through genotyping-by-sequencing.

Published in:

PLoS ONE, 2017, v. 12, n. 11, p. 1, doi. 10.1371/journal.pone.0188745

By:

Shi, Ainong;
Qin, Jun;
Mou, Beiquan;
Correll, James;
Weng, Yuejin;
Brenner, David;
Feng, Chunda;
Motes, Dennis;
Yang, Wei;
Dong, Lingdi;
Bhattarai, Gehendra;
Ravelombola, Waltram

Publication type:

Article

iTRAQ protein profile analysis of developmental dynamics in soybean [Glycine max (L.) Merr.] leaves.

Published in:

PLoS ONE, 2017, v. 12, n. 9, p. 1, doi. 10.1371/journal.pone.0181910

By:

Qin, Jun;
Zhang, Jianan;
Wang, Fengmin;
Wang, Jinghua;
Zheng, Zhi;
Yin, Changcheng;
Chen, Hao;
Shi, Ainong;
Zhang, Bo;
Chen, Pengyin;
Zhang, Mengchen

Publication type:

Article

Genome-wide association mapping of resistance to Phytophthora sojae in a soybean [Glycine max (L.) Merr.] germplasm panel from maturity groups IV and V.

Published in:

PLoS ONE, 2017, v. 12, n. 9, p. 1, doi. 10.1371/journal.pone.0184613

By:

Qin, Jun;
Song, Qijian;
Shi, Ainong;
Li, Song;
Zhang, Mengchen;
Zhang, Bo

Publication type:

Article

Genetic Analysis of High Sucrose, Low Raffinose, and Low Stachyose Content in V99-5089 Soybean Seeds.

Published in:

Journal of Crop Improvement, 2013, v. 27, n. 5, p. 606, doi. 10.1080/15427528.2013.812998

By:

Mozzoni, Leandro;
Shi, Ainong;
Chen, Pengyin

Publication type:

Article

Detached leaf inoculation assay for evaluating resistance to the spinach downy mildew pathogen.

Published in:

European Journal of Plant Pathology, 2020, v. 158, n. 2, p. 511, doi. 10.1007/s10658-020-02096-5

By:

Bhattarai, Gehendra;
Feng, Chunda;
Dhillon, Braham;
Shi, Ainong;
Villarroel-Zeballos, Maria;
Klosterman, Steven J.;
Correll, James C.

Publication type:

Article

Genetic Dissection of Diverse Seed Coat Patterns in Cowpea through a Comprehensive GWAS Approach.

Published in:

Plants (2223-7747), 2024, v. 13, n. 9, p. 1275, doi. 10.3390/plants13091275

By:

Xiong, Haizheng;
Chen, Yilin;
Ravelombola, Waltram;
Mou, Beiquan;
Sun, Xiaolun;
Zhang, Qingyang;
Xiao, Yiting;
Tian, Yang;
Luo, Qun;
Alatawi, Ibtisam;
Chiwina, Kenani Edward;
Alkabkabi, Hanan Mohammedsaeed;
Shi, Ainong

Publication type:

Article

Ability of Genomic Prediction to Bi-Parent-Derived Breeding Population Using Public Data for Soybean Oil and Protein Content.

Published in:

Plants (2223-7747), 2024, v. 13, n. 9, p. 1260, doi. 10.3390/plants13091260

By:

Li, Chenhui;
Yang, Qing;
Liu, Bingqiang;
Shi, Xiaolei;
Liu, Zhi;
Yang, Chunyan;
Wang, Tao;
Xiao, Fuming;
Zhang, Mengchen;
Shi, Ainong;
Yan, Long

Publication type:

Article

Evaluation of Tomato Germplasm against Tomato Brown Rugose Fruit Virus and Identification of Resistance in Solanum pimpinellifolium.

Published in:

Plants (2223-7747), 2024, v. 13, n. 5, p. 581, doi. 10.3390/plants13050581

By:

Jaiswal, Namrata;
Chanda, Bidisha;
Gilliard, Andrea;
Shi, Ainong;
Ling, Kai-Shu

Publication type:

Article

A Genome-Wide Association Study Reveals Region Associated with Seed Protein Content in Cowpea.

Published in:

Plants (2223-7747), 2023, v. 12, n. 14, p. 2705, doi. 10.3390/plants12142705

By:

Chen, Yilin;
Xiong, Haizheng;
Ravelombola, Waltram;
Bhattarai, Gehendra;
Barickman, Casey;
Alatawi, Ibtisam;
Phiri, Theresa Makawa;
Chiwina, Kenani;
Mou, Beiquan;
Tallury, Shyam;
Shi, Ainong

Publication type:

Article

A Genome-Wide Association Study and Genomic Prediction for Fiber and Sucrose Contents in a Mapping Population of LCP 85-384 Sugarcane.

Published in:

Plants (2223-7747), 2023, v. 12, n. 5, p. 1041, doi. 10.3390/plants12051041

By:

Xiong, Haizheng;
Chen, Yilin;
Pan, Yong-Bao;
Shi, Ainong

Publication type:

Article

Genome-wide identification and expression analysis of the CBF/DREB1 gene family in lettuce.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-62458-1

By:

Park, Sunchung;
Shi, Ainong;
Mou, Beiquan

Publication type:

Article

Population genetics and genome‐wide association studies provide insights into the influence of selective breeding on genetic variation in lettuce.

Published in:

Plant Genome, 2021, v. 14, n. 2, p. 1, doi. 10.1002/tpg2.20086

By:

Park, Sunchung;
Kumar, Pawan;
Shi, Ainong;
Mou, Beiquan

Publication type:

Article

Growth and Photosynthetic Responses of Cowpea Genotypes under Waterlogging at the Reproductive Stage.

Published in:

Plants (2223-7747), 2022, v. 11, n. 17, p. 2315, doi. 10.3390/plants11172315

By:

Olorunwa, Omolayo J.;
Adhikari, Bikash;
Brazel, Skyler;
Shi, Ainong;
Popescu, Sorina C.;
Popescu, George V.;
Barickman, T. Casey

Publication type:

Article

A genome-wide association study and genomic prediction for Phakopsora pachyrhizi resistance in soybean.

Published in:

Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1179357

By:

Haizheng Xiong;
Yilin Chen;
Yong-Bao Pan;
Jinshe Wang;
Weiguo Lu;
Ainong Shi

Publication type:

Article

Identification of a QTL region for ashy stem blight resistance using genome-wide association and linage analysis in common bean recombinant inbred lines derived from BAT 477 and NY6020-4.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.1019263

By:

Viteri, Diego M.;
Linares, Angela M.;
Miranda, Zoralys;
Shi, Ainong

Publication type:

Article

Mapping and selection of downy mildew resistance in spinach cv. whale by low coverage whole genome sequencing.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.1012923

By:

Bhattarai, Gehendra;
Olaoye, Dotun;
Mou, Beiquan;
Correll, James C.;
Shi, Ainong

Publication type:

Article

Genomic Association and Prediction Study for Yield Traits in a Sugarcane (Saccharum spp. Hybrids) Mapping Population 'LCP 85‐384'.

Published in:

Plant Breeding, 2025, v. 144, n. 1, p. 56, doi. 10.1111/pbr.13221

By:

Phiri, Theresa Makawa;
Xiong, Haizheng;
Pan, Yong‐Bao;
Dickson, Ryan William;
Joshi, Neelendra;
Rojas, Alejandro;
Shi, Ainong

Publication type:

Article

Association mapping of leaf traits in spinach ( Spinacia oleracea L.).

Published in:

Plant Breeding, 2016, v. 135, n. 3, p. 399, doi. 10.1111/pbr.12369

By:

Ma, Jianbing;
Shi, Ainong;
Mou, Beiquan;
Evans, Michael;
Clark, John R.;
Motes, Dennis;
Correll, Jim C.;
Xiong, Haizheng;
Qin, Jun;
Chitwood, Jessica;
Weng, Yuejin;
Havey, M.

Publication type:

Article

Agronomic performance and genetic progress of selected historical soybean varieties in the southern USA.

Published in:

Plant Breeding, 2015, v. 134, n. 1, p. 85, doi. 10.1111/pbr.12222

By:

Rogers, Justin;
Chen, Pengyin;
Shi, Ainong;
Zhang, Bo;
Scaboo, Andrew;
Smith, S. Faye;
Zeng, Ailan;
Singh, R.

Publication type:

Article

Mapping powdery mildew resistance gene in V97-3000 soybean.

Published in:

Plant Breeding, 2013, v. 132, n. 6, p. 625, doi. 10.1111/pbr.12072

By:

Wang, Yueqiang;
Shi, Ainong;
Zhang, Bo;
Chen, Pengyin;
Singh, R.

Publication type:

Article

Correction to: Low frequency of the wild‑type freezing‑tolerance LsCBF7 allele among lettuce population suggests a negative selection during domestication and breeding.

Published in:

2025

By:

Park, Sunchung;
Shi, Ainong;
Mou, Beiquan

Publication type:

Correction Notice

Correction to: Low frequency of the wild‑type freezing‑tolerance LsCBF7 allele among lettuce population suggests a negative selection during domestication and breeding.

Published in:

2025

By:

Park, Sunchung;
Shi, Ainong;
Mou, Beiquan

Publication type:

Correction Notice

Correction to: Low frequency of the wild‑type freezing‑tolerance LsCBF7 allele among lettuce population suggests a negative selection during domestication and breeding.

Published in:

2024

By:

Park, Sunchung;
Shi, Ainong;
Mou, Beiquan

Publication type:

Correction Notice

Low frequency of the wild-type freezing-tolerance LsCBF7 allele among lettuce population suggests a negative selection during domestication and breeding.

Published in:

Theoretical & Applied Genetics, 2024, v. 137, n. 6, p. 1, doi. 10.1007/s00122-024-04643-8

By:

Park, Sunchung;
Shi, Ainong;
Mou, Beiquan

Publication type:

Article

Association analysis of salt tolerance in cowpea ( Vigna unguiculata (L.) Walp) at germination and seedling stages.

Published in:

Theoretical & Applied Genetics, 2018, v. 131, n. 1, p. 79, doi. 10.1007/s00122-017-2987-0

By:

Ravelombola, Waltram;
Shi, Ainong;
Weng, Yuejin;
Mou, Beiquan;
Motes, Dennis;
Clark, John;
Chen, Pengyin;
Srivastava, Vibha;
Qin, Jun;
Dong, Lingdi;
Yang, Wei;
Bhattarai, Gehendra;
Sugihara, Yuichi

Publication type:

Article

Multiplex single nucleotide polymorphism (SNP) assay for detection of soybean mosaic virus resistance genes in soybean.

Published in:

Theoretical & Applied Genetics, 2011, v. 122, n. 2, p. 445, doi. 10.1007/s00122-010-1459-6

By:

Shi, Ainong;
Chen, Pengyin;
Vierling, Richard;
Zheng, Cuming;
Li, Dexiao;
Dong, Dekun;
Shakiba, Ehsan;
Cervantez, Innan

Publication type:

Article

Genetic diversity and association mapping of mineral element concentrations in spinach leaves.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4297-y

By:

Jun Qin;
Ainong Shi;
Beiquan Mou;
Grusak, Michael A.;
Yuejin Weng;
Ravelombola, Waltram;
Bhattarai, Gehendra;
Lingdi Dong;
Wei Yang

Publication type:

Article