Works by Agata, Kiyokazu

Results: 93

Establishment of high-resolution FISH mapping system and its application for molecular cytogenetic characterization of chromosomes in newt, Cynops pyrrhogaster (Urodela, Amphibia).

Published in:

Chromosome Research, 2007, v. 15, n. 4, p. 471

By:

Nobuyasu Maki;
Kiyokazu Agata

Publication type:

Article

Crossability of a high-mountain dwarf variety of Lysimachia japonica (Primulaceae) endemic to Yakushima Island with its normal-sized lowland counterpart.

Published in:

Plant Systematics & Evolution, 2017, v. 303, n. 6, p. 807, doi. 10.1007/s00606-017-1410-2

By:

Kakezawa, Akihiro;
Tamura, Minoru;
Agata, Kiyokazu;
Shinohara, Wataru

Publication type:

Article

How are plant and fungal communities linked to each other in belowground ecosystems? A massively parallel pyrosequencing analysis of the association specificity of root-associated fungi and their host plants.

Published in:

Ecology & Evolution (20457758), 2013, v. 3, n. 9, p. 3112, doi. 10.1002/ece3.706

By:

Toju, Hirokazu;
Sato, Hirotoshi;
Yamamoto, Satoshi;
Kadowaki, Kohmei;
Tanabe, Akifumi S.;
Yazawa, Shigenobu;
Nishimura, Osamu;
Agata, Kiyokazu

Publication type:

Article

Comparison of the Chromosome Structures between the Chicken and Three Anserid Species, the Domestic Duck (Anas platyrhynchos), Muscovy Duck (Cairina moschata), and Chinese Goose (Anser cygnoides), and the Delineation of their Karyotype Evolution by Comparative Chromosome Mapping

Published in:

Journal of Poultry Science, 2014, v. 51, n. 1, p. 1, doi. 10.2141/jpsa.0130090

By:

Islam, Fhamida B.;
Uno, Yoshinobu;
Nunome, Mitsuo;
Nishimura, Osamu;
Tarui, Hiroshi;
Agata, Kiyokazu;
Matsuda, Yoichi

Publication type:

Article

Ontogenesis of α<sub>2</sub>-Adrenoceptor Coupling with GTP-Binding Proteins in the Rat Telencephalon.

Published in:

Journal of Neurochemistry, 1989, v. 53, n. 1, p. 249, doi. 10.1111/j.1471-4159.1989.tb07321.x

By:

Kitamura, Yoshihisa;
Mochii, Makoto;
Kodama, Ryuji;
Agata, Kiyokazu;
Watanabe, Kenji;
Eguchi, Goro;
Nomura, Yasuyuki

Publication type:

Article

Intra-genomic GC heterogeneity in sauropsids: evolutionary insights from cDNA mapping and GC<sub>3</sub> profiling in snake.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 604, doi. 10.1186/1471-2164-13-604

By:

Kazumi Matsubara;
Shigehiro Kuraku;
Hiroshi Tarui;
Osamu Nishimura;
Chizuko Nishida;
Kiyokazu Agata;
Yoshinori Kumazawa;
Yoichi Matsuda

Publication type:

Article

Comparative transcriptome analysis between planarian Dugesia japonica and other platyhelminth species.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 289, doi. 10.1186/1471-2164-13-289

By:

Nishimura, Osamu;
Hirao, Yukako;
Tarui, Hiroshi;
Agata, Kiyokazu

Publication type:

Article

Coordination between binocular field and spontaneous self-motion specifies the efficiency of planarians' photo-response orientation behavior.

Published in:

Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0151-2

By:

Akiyama, Yoshitaro;
Agata, Kiyokazu;
Inoue, Takeshi

Publication type:

Article

A Colony Multiplex Quantitative PCR-Based 3S3DBC Method and Variations of It for Screening DNA Libraries.

Published in:

PLoS ONE, 2015, v. 10, n. 2, p. 1, doi. 10.1371/journal.pone.0116997

By:

An, Yang;
Toyoda, Atsushi;
Zhao, Chen;
Fujiyama, Asao;
Agata, Kiyokazu

Publication type:

Article

Inference of the Protokaryotypes of Amniotes and Tetrapods and the Evolutionary Processes of Microchromosomes from Comparative Gene Mapping.

Published in:

PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0053027

By:

Uno, Yoshinobu;
Nishida, Chizuko;
Tarui, Hiroshi;
Ishishita, Satoshi;
Takagi, Chiyo;
Nishimura, Osamu;
Ishijima, Junko;
Ota, Hidetoshi;
Kosaka, Ayumi;
Matsubara, Kazumi;
Murakami, Yasunori;
Kuratani, Shigeru;
Ueno, Naoto;
Agata, Kiyokazu;
Matsuda, Yoichi

Publication type:

Article

Genome Features of "Dark-Fly", a Drosophila Line Reared Long-Term in a Dark Environment.

Published in:

PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0033288

By:

Minako Izutsu;
Jun Zhou;
Yuzo Sugiyama;
Osamu Nishimura;
Tomoyuki Aizu;
Atsushi Toyoda;
Asao Fujiyama;
Kiyokazu Agata;
Naoyuki Fuse

Publication type:

Article

Oocyte-type linker histone B4 is required for transdifferentiation of somatic cells in vivo.

Published in:

FASEB Journal, 2010, v. 24, n. 9, p. 3462, doi. 10.1096/fj.10-159285

By:

Maki, Nobuyasu;
Suetsugu-Maki, Rinako;
Sano, Shozo;
Nakamura, Kenta;
Nishimura, Osamu;
Tarui, Hiroshi;
Del Rio-Tsonis, Katia;
Ohsumi, Keita;
Agata, Kiyokazu;
Tsonis, Panagiotis A.

Publication type:

Article

Immunohistochemical detection of opsins in turbellarians.

Published in:

Hydrobiologia, 1998, v. 383, n. 1-3, p. N, doi. 10.1023/A:1003495928829

By:

Orii, Hidefumi;
Katayama, Tomoe;
Sakurai, Takashige;
Agata, Kiyokazu;
Watanabe, Kenji

Publication type:

Article

Isolation of planarian viable cells using fluorescence‐activated cell sorting for advancing single‐cell transcriptome analysis.

Published in:

Genes to Cells, 2023, v. 28, n. 11, p. 800, doi. 10.1111/gtc.13068

By:

Kuroki, Yoshihito;
Agata, Kiyokazu

Publication type:

Article

Structure and function of primitive immunoglobulin superfamily neural cell adhesion molecules: a lesson from studies on planarian.

Published in:

Genes to Cells, 2006, v. 11, n. 5, p. 541, doi. 10.1111/j.1365-2443.2006.00962.x

By:

Fusaoka, Eri;
Inoue, Takeshi;
Mineta, Katsuhiko;
Agata, Kiyokazu;
Takeuchi, Kosei

Publication type:

Article

Modelling the global distribution of fungal species: new insights into microbial cosmopolitanism.

Published in:

Molecular Ecology, 2012, v. 21, n. 22, p. 5599, doi. 10.1111/mec.12053

By:

Sato, Hirotoshi;
Tsujino, Riyou;
Kurita, Kazuki;
Yokoyama, Kazumasa;
Agata, Kiyokazu

Publication type:

Article

Thermosensory Signaling by TRPM Is Processed by Brain Serotonergic Neurons to Produce Planarian Thermotaxis.

Published in:

Journal of Neuroscience, 2014, v. 34, n. 47, p. 15701, doi. 10.1523/JNEUROSCI.5379-13.2014

By:

Inoue, Takeshi;
Yamashita, Taiga;
Agata, Kiyokazu

Publication type:

Article

FGF‐stimulated tendon cells embrace a chondrogenic fate with BMP7 in newt tissue culture.

Published in:

Development, Growth & Differentiation, 2024, v. 66, n. 3, p. 182, doi. 10.1111/dgd.12913

By:

Sugiura, Nao;
Agata, Kiyokazu

Publication type:

Article

Establishment of a new method to isolate viable x‐ray‐sensitive cells from planarian by fluorescence‐activated cell sorting.

Published in:

Development, Growth & Differentiation, 2023, v. 65, n. 9, p. 577, doi. 10.1111/dgd.12886

By:

Ishida, Miyuki;
Kuroki, Yoshihito;
Agata, Kiyokazu

Publication type:

Article

Migratory regulation by MTA homologous genes is essential for the uniform distribution of planarian adult pluripotent stem cells.

Published in:

Development, Growth & Differentiation, 2022, v. 64, n. 3, p. 150, doi. 10.1111/dgd.12773

By:

Sato, Yuki;
Shibata, Norito;
Hashimoto, Chikara;
Agata, Kiyokazu

Publication type:

Article

Quantification of planarian behaviors.

Published in:

Development, Growth & Differentiation, 2022, v. 64, n. 1, p. 16, doi. 10.1111/dgd.12765

By:

Inoue, Takeshi;
Agata, Kiyokazu

Publication type:

Article

Piwi expression in archeocytes and choanocytes in demosponges: insights into the stem cell system in demosponges.

Published in:

Evolution & Development, 2010, v. 12, n. 3, p. 275, doi. 10.1111/j.1525-142X.2010.00413.x

By:

Funayama, Noriko;
Nakatsukasa, Mikiko;
Mohri, Kurato;
Masuda, Yoshiki;
Agata, Kiyokazu

Publication type:

Article

comprehensive reference transcriptome resource for the Iberian ribbed newt Pleurodeles waltl , an emerging model for developmental and regeneration biology.

Published in:

DNA Research, 2019, v. 26, n. 3, p. 217, doi. 10.1093/dnares/dsz003

By:

Matsunami, Masatoshi;
Suzuki, Miyuki;
Haramoto, Yoshikazu;
Fukui, Akimasa;
Inoue, Takeshi;
Yamaguchi, Katsushi;
Uchiyama, Ikuo;
Mori, Kazuki;
Tashiro, Kosuke;
Ito, Yuzuru;
Takeuchi, Takashi;
Suzuki, Ken-ichi T;
Agata, Kiyokazu;
Shigenobu, Shuji;
Hayashi, Toshinori

Publication type:

Article

Planarian Cytochrome b561: Conservation of a Six Transmembrane Structure and Localization along the Central and Peripheral Nervous System1.

Published in:

Journal of Biochemistry, 2002, v. 131, n. 2, p. 175, doi. 10.1093/oxfordjournals.jbchem.a003085

By:

Asada, Akikazu;
Kusakawa, Takashi;
Orii, Hidefumi;
Agata, Kiyokazu;
Watanabe, Kenji;
Tsubaki, Motonari

Publication type:

Article

Bidirectional promoters are the major source of gene activation-associated non-coding RNAs in mammals.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-35

By:

Masahiro Uesaka;
Osamu Nishimura;
Yasuhiro Go;
Kinichi Nakashima;
Kiyokazu Agata;
Takuya Imamura

Publication type:

Article

Expression patterns of Xenopus FGF receptor?like 1/nou?darake in early Xenopus development resemble those of planarian nou?darake and Xenopus FGF8.

Published in:

Developmental Dynamics, 2004, v. 230, n. 4, p. 700

By:

Shuichi Hayashi;
Mari Itoh;
Sumiko Taira;
Kiyokazu Agata;
Masanori Taira

Publication type:

Article

Mediolateral intercalation in planarians revealed by grafting experiments.

Published in:

Developmental Dynamics, 2003, v. 226, n. 2, p. 334, doi. 10.1002/dvdy.10246

By:

Saito, Yumi;
Koinuma, Satoshi;
Watanabe, Kenji;
Agata, Kiyokazu

Publication type:

Article

Calcium ions in the aquatic environment drive planarians to food.

Published in:

Zoological Letters, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1186/s40851-019-0147-x

By:

Mori, Masato;
Narahashi, Maria;
Hayashi, Tetsutaro;
Ishida, Miyuki;
Kumagai, Nobuyoshi;
Sato, Yuki;
Bagherzadeh, Reza;
Agata, Kiyokazu;
Inoue, Takeshi

Publication type:

Article

Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians.

Published in:

Zoological Letters, 2018, v. 4, n. 1, p. N.PAG, doi. 10.1186/s40851-018-0102-2

By:

An, Yang;
Kawaguchi, Akane;
Zhao, Chen;
Toyoda, Atsushi;
Sharifi-Zarchi, Ali;
Mousavi, Seyed Ahmad;
Bagherzadeh, Reza;
Inoue, Takeshi;
Ogino, Hajime;
Fujiyama, Asao;
Chitsaz, Hamidreza;
Baharvand, Hossein;
Agata, Kiyokazu

Publication type:

Article

Genome-scale evolution in local populations of wild chimpanzees.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-024-84163-z

By:

Hayakawa, Takashi;
Kishida, Takushi;
Go, Yasuhiro;
Inoue, Eiji;
Kawaguchi, Eri;
Aizu, Tomoyuki;
Ishizaki, Hinako;
Toyoda, Atsushi;
Fujiyama, Asao;
Matsuzawa, Tetsuro;
Hashimoto, Chie;
Furuichi, Takeshi;
Agata, Kiyokazu

Publication type:

Article

Regeneration in an evolutionarily primitive brain - the planarian Dugesia japonica model.

Published in:

European Journal of Neuroscience, 2011, v. 34, n. 6, p. 863, doi. 10.1111/j.1460-9568.2011.07819.x

By:

Umesono, Yoshihiko;
Tasaki, Junichi;
Nishimura, Kaneyasu;
Inoue, Takeshi;
Agata, Kiyokazu

Publication type:

Article

Regeneration of dopaminergic neurons after 6-hydroxydopamine-induced lesion in planarian brain.

Published in:

Journal of Neurochemistry, 2011, v. 119, n. 6, p. 1217, doi. 10.1111/j.1471-4159.2011.07518.x

By:

Nishimura, Kaneyasu;
Inoue, Takeshi;
Yoshimoto, Kanji;
Taniguchi, Takashi;
Kitamura, Yoshihisa;
Agata, Kiyokazu

Publication type:

Article

Improving the standards for gut microbiome analysis of fecal samples: insights from the field biology of Japanese macaques on Yakushima Island.

Published in:

Primates, 2018, v. 59, n. 5, p. 423, doi. 10.1007/s10329-018-0671-x

By:

Hayakawa, Takashi;
Sawada, Akiko;
Tanabe, Akifumi S.;
Fukuda, Shinji;
Kishida, Takushi;
Kurihara, Yosuke;
Matsushima, Kei;
Liu, Jie;
Akomo-Okoue, Etienne-Francois;
Gravena, Waleska;
Kashima, Makoto;
Suzuki, Mariko;
Kadowaki, Kohmei;
Suzumura, Takafumi;
Inoue, Eiji;
Sugiura, Hideki;
Hanya, Goro;
Agata, Kiyokazu

Publication type:

Article

FGFR-related gene nou-darake restricts brain tissues to the head region of planarians.

Published in:

Nature, 2002, v. 419, n. 6907, p. 620

By:

Cebrià, Francesc;
Kobayashi, Chiyoko;
Umesono, Yoshihiko;
Nakazawa, Masumi;
Mineta, Katsuhiko;
Ikeo, Kazuho;
Gojobori, Takashi;
Itoh, Mari;
Taira, Masanori;
Alvarado, Alejandro Sánchez;
Agata, Kiyokazu

Publication type:

Article

Evidence that the chick lens cytoskeletal protein CP 49 belongs to the family of intermediate filament proteins.

Published in:

Current Eye Research, 1993, v. 12, n. 6, p. 583, doi. 10.3109/02713689309001836

By:

Orii, Hidefumi;
Agata, Kiyokazu;
Sawada, Kaichiro;
Eguchi, Goro;
Maisel, Harry

Publication type:

Article

Sequential actions of β-catenin and Bmp pattern the oral nerve net in Nematostella vectensis.

Published in:

Nature Communications, 2014, v. 5, n. 12, p. 5536, doi. 10.1038/ncomms6536

By:

Watanabe, Hiroshi;
Kuhn, Anne;
Fushiki, Manami;
Agata, Kiyokazu;
Özbek, Suat;
Fujisawa, Toshitaka;
Holstein, Thomas W.

Publication type:

Article

JmjC Domain-Encoding Genes Are Conserved in Highly Regenerative Metazoans and Are Associated with Planarian Whole-Body Regeneration.

Published in:

Genome Biology & Evolution, 2019, v. 11, n. 2, p. 552, doi. 10.1093/gbe/evz021

By:

Cao, Ping-Lin;
Kumagai, Nobuyoshi;
Inoue, Takeshi;
Agata, Kiyokazu;
Makino, Takashi

Publication type:

Article

Reconstruction of dopaminergic neural network and locomotion function in planarian regenerates.

Published in:

Developmental Neurobiology (19328451), 2007, v. 67, n. 8, p. 1059, doi. 10.1002/dneu.20377

By:

Nishimura, Kaneyasu;
Kitamura, Yoshihisa;
Inoue, Takeshi;
Umesono, Yoshihiko;
Sano, Shozo;
Yoshimoto, Kanji;
Inden, Masatoshi;
Takata, Kazuyuki;
Taniguchi, Takashi;
Shimohama, Shun;
Agata, Kiyokazu

Publication type:

Article

Unusually Large Number of Mutations in Asexually Reproducing Clonal Planarian Dugesia japonica.

Published in:

PLoS ONE, 2015, v. 10, n. 11, p. 1, doi. 10.1371/journal.pone.0143525

By:

Nishimura, Osamu;
Hosoda, Kazutaka;
Kawaguchi, Eri;
Yazawa, Shigenobu;
Hayashi, Tetsutaro;
Inoue, Takeshi;
Umesono, Yoshihiko;
Agata, Kiyokazu

Publication type:

Article

Spontaneous Behaviors and Wall-Curvature Lead to Apparent Wall Preference in Planarian.

Published in:

PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0142214

By:

Akiyama, Yoshitaro;
Agata, Kiyokazu;
Inoue, Takeshi

Publication type:

Article

Search for the Evolutionary Origin of a Brain: Planarian Brain Characterized by Microarray.

Published in:

Molecular Biology & Evolution, 2003, v. 20, n. 5, p. 784, doi. 10.1093/molbev/msg086

By:

Nakazawa, Masumi;
Cebrià, Francesc;
Mineta, Katsuhiko;
Ikeo, Kazuho;
Agata, Kiyokazu;
Gojobori, Takashi

Publication type:

Article

RNA interference by feeding in vitro-synthesized double-stranded RNA to planarians: Methodology and dynamics.

Published in:

Developmental Dynamics, 2013, v. 242, n. 6, p. 718, doi. 10.1002/dvdy.23950

By:

Rouhana, Labib;
Weiss, Jennifer A.;
Forsthoefel, David J.;
Lee, Hayoung;
King, Ryan S.;
Inoue, Takeshi;
Shibata, Norito;
Agata, Kiyokazu;
Newmark, Phillip A.

Publication type:

Article

RNA interference by feeding in vitro-synthesized double-stranded RNA to planarians: Methodology and dynamics.

Published in:

Developmental Dynamics, 2013, v. 242, n. 6, p. C1, doi. 10.1002/dvdy.23982

By:

Rouhana, Labib;
Weiss, Jennifer A.;
Forsthoefel, David J.;
Lee, Hayoung;
King, Ryan S.;
Inoue, Takeshi;
Shibata, Norito;
Agata, Kiyokazu;
Newmark, Phillip A.

Publication type:

Article

Lens regenerates by means of similar processes and timeline in adults and larvae of the newt Cynops pyrrhogaster.

Published in:

Developmental Dynamics, 2012, v. 241, n. 10, p. 1575, doi. 10.1002/dvdy.23854

By:

Inoue, Takeshi;
Inoue, Ryo;
Tsutsumi, Rio;
Tada, Kikuo;
Urata, Yuko;
Michibayashi, Chiaki;
Takemura, Shota;
Agata, Kiyokazu

Publication type:

Article

Staging of regeneration process of an arm of the feather star Oxycomanthus japonicus focusing on the oral-aboral boundary.

Published in:

Developmental Dynamics, 2010, v. 239, n. 11, p. 2947, doi. 10.1002/dvdy.22429

By:

Shibata, Tomoko F.;
Oji, Tatsuo;
Akasaka, Koji;
Agata, Kiyokazu

Publication type:

Article

Expression of stem cell pluripotency factors during regeneration in newts.

Published in:

Developmental Dynamics, 2009, v. 238, n. 6, p. 1613, doi. 10.1002/dvdy.21959

By:

Maki, Nobuyasu;
Suetsugu-Maki, Rinako;
Tarui, Hiroshi;
Agata, Kiyokazu;
Del Rio-Tsonis, Katia;
Tsonis, Panagiotis A.

Publication type:

Article

Toward understanding the morphogenesis of siliceous spicules in freshwater sponge: Differential mRNA expression of spicule-type-specific silicatein genes in Ephydatia fluviatilis.

Published in:

Developmental Dynamics, 2008, v. 237, n. 10, p. 3024, doi. 10.1002/dvdy.21708

By:

Mohri, Kurato;
Nakatsukasa, Mikiko;
Masuda, Yoshiki;
Agata, Kiyokazu;
Funayama, Noriko

Publication type:

Article

Comparison of molecular and cellular events during lower jaw regeneration of newt ( Cynops pyrrhogaster) and West African clawed frog ( Xenopus tropicalis).

Published in:

Developmental Dynamics, 2008, v. 237, n. 2, p. 354, doi. 10.1002/dvdy.21419

By:

Kurosaka, Hiroshi;
Takano-Yamamoto, Teruko;
Yamashiro, Takashi;
Agata, Kiyokazu

Publication type:

Article

DjCBC-1, a conserved DEAD box RNA helicase of the RCK/p54/Me31B family, is a component of RNA-protein complexes in planarian stem cells and neurons.

Published in:

Developmental Dynamics, 2007, v. 236, n. 12, p. 3436, doi. 10.1002/dvdy.21375

By:

Yoshida-Kashikawa, Maki;
Shibata, Norito;
Takechi, Katsuaki;
Agata, Kiyokazu

Publication type:

Article

Rapid accumulation of nucleostemin in nucleolus during newt regeneration.

Published in:

Developmental Dynamics, 2007, v. 236, n. 4, p. spc1, doi. 10.1002/dvdy.21142

By:

Nobuyasu Maki;
Katsuaki Takechi;
Shozo Sano;
Hiroshi Tarui;
Yoshiki Sasai;
Kiyokazu Agata

Publication type:

Article