Works by Agarkova, Irina

Results: 27

N-glycans from Paramecium bursaria chlorella virus MA-1D: Re-evaluation of the oligosaccharide common core structure.

Published in:

Glycobiology, 2022, v. 39, n. 3, p. 260, doi. 10.1093/glycob/cwab113

By:

Speciale, Immacolata;
Lorenzo, Flaviana Di;
Notaro, Anna;
Noel, Eric;
Agarkova, Irina;
Molinaro, Antonio;
Etten, James L Van;
Castro, Cristina De

Publication type:

Article

Carbohydrate-mediated interactions between chloroviruses and the immune system.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07244-9

By:

Speciale, Immacolata;
Notaro, Anna;
Bruijns, Sven;
van Kooyk, Yvette;
Esmael, Ahmed;
Molinaro, Antonio;
Balzarini, Fabio;
Rodriguez, Ernesto;
Petro, Thomas M.;
Agarkova, Irina V.;
Pattee, Gary L.;
Van Etten, James L.;
De Castro, Cristina;
Chiodo, Fabrizio

Publication type:

Article

Chlorovirus ATCV-1 Accelerates Motor Deterioration in SOD1-G93A Transgenic Mice and Its SOD1 Augments Induction of Inflammatory Factors From Murine Macrophages.

Published in:

Frontiers in Neurology, 2022, v. 13, p. 1, doi. 10.3389/fneur.2022.821166

By:

Petro, Thomas M.;
Agarkova, Irina V.;
Esmael, Ahmed;
Dunigan, David D.;
Van Etten, James L.;
Pattee, Gary L.

Publication type:

Article

Viral DNA Accumulation Regulates Replication Efficiency of Chlorovirus OSy-NE5 in Two Closely Related Chlorella variabilis Strains.

Published in:

Viruses (1999-4915), 2023, v. 15, n. 6, p. 1341, doi. 10.3390/v15061341

By:

Esmael, Ahmed;
Agarkova, Irina V.;
Dunigan, David D.;
Zhou, You;
Van Etten, James L.

Publication type:

Article

Early-Phase Drive to the Precursor Pool: Chloroviruses Dive into the Deep End of Nucleotide Metabolism.

Published in:

Viruses (1999-4915), 2023, v. 15, n. 4, p. 911, doi. 10.3390/v15040911

By:

Dunigan, David D.;
Agarkova, Irina V.;
Esmael, Ahmed;
Alvarez, Sophie;
Van Etten, James L.

Publication type:

Article

Identification of a Chlorovirus PBCV-1 Protein Involved in Degrading the Host Cell Wall during Virus Infection.

Published in:

Viruses (1999-4915), 2021, v. 13, n. 5, p. 782, doi. 10.3390/v13050782

By:

Agarkova, Irina V.;
Lane, Leslie C.;
Dunigan, David D.;
Quispe, Cristian F.;
Duncan, Garry A.;
Milrot, Elad;
Minsky, Abraham;
Esmael, Ahmed;
Ghosh, Jayadri S.;
Van Etten, James L.;
Nissimov, Jozef

Publication type:

Article

Genetic Diversity of Potassium Ion Channel Proteins Encoded by Chloroviruses That Infect Chlorella heliozoae.

Published in:

Viruses (1999-4915), 2020, v. 12, n. 6, p. 678, doi. 10.3390/v12060678

By:

Murry, Carter R.;
Agarkova, Irina V.;
Ghosh, Jayadri S.;
Fitzgerald, Fiona C.;
Carlson, Roger M.;
Hertel, Brigitte;
Kukovetz, Kerri;
Rauh, Oliver;
Thiel, Gerhard;
Van Etten, James L.

Publication type:

Article

Chloroviruses.

Published in:

Viruses (1999-4915), 2020, v. 12, n. 1, p. 20, doi. 10.3390/v12010020

By:

Van Etten, James L.;
Agarkova, Irina V.;
Dunigan, David D.

Publication type:

Article

Injectable living marrow stromal cell-based autologous tissue engineered heart valves: first experiences with a one-step intervention in primates.

Published in:

European Heart Journal, 2011, v. 32, n. 22, p. 2830, doi. 10.1093/eurheartj/ehr059

By:

Weber, Benedikt;
Scherman, Jacques;
Emmert, Maximilian Y.;
Gruenenfelder, Juerg;
Verbeek, Renier;
Bracher, Mona;
Black, Melanie;
Kortsmit, Jeroen;
Franz, Thomas;
Schoenauer, Roman;
Baumgartner, Laura;
Brokopp, Chad;
Agarkova, Irina;
Wolint, Petra;
Zund, Gregor;
Falk, Volkmar;
Zilla, Peter;
Hoerstrup, Simon P.

Publication type:

Article

Network integration and modelling of dynamic drug responses at multi-omics levels.

Published in:

Communications Biology, 2020, v. 3, n. 1, p. N.PAG, doi. 10.1038/s42003-020-01302-8

By:

Selevsek, Nathalie;
Caiment, Florian;
Nudischer, Ramona;
Gmuender, Hans;
Agarkova, Irina;
Atkinson, Francis L.;
Bachmann, Ivo;
Baier, Vanessa;
Barel, Gal;
Bauer, Chris;
Boerno, Stefan;
Bosc, Nicolas;
Clayton, Olivia;
Cordes, Henrik;
Deeb, Sally;
Gotta, Stefano;
Guye, Patrick;
Hersey, Anne;
Hunter, Fiona M. I.;
Kunz, Laura

Publication type:

Article

Multi-omics HeCaToS dataset of repeated dose toxicity for cardiotoxic & hepatotoxic compounds.

Published in:

Scientific Data, 2022, v. 9, n. 1, p. 1, doi. 10.1038/s41597-022-01825-1

By:

Verheijen, Marcha;
Sarkans, Ugis;
Wolski, Witold;
Jennen, Danyel;
Caiment, Florian;
Kleinjans, Jos;
HeCaToS Consortium;
Agarkova, Irina;
Atkinson, Francis L.;
Bachmann, Ivo;
Baier, Vanessa;
Barel, Gal;
Bauer, Chris;
van den Beucken, Twan;
Boerno, Stefan;
Bosc, Nicolas;
Carey, Conn;
Castell, José V.;
Clayton, Olivia;
Cordes, Henrik

Publication type:

Article

Activated Cardiac Fibroblasts Control Contraction of Human Fibrotic Cardiac Microtissues by a β-Adrenoreceptor-Dependent Mechanism.

Published in:

Cells (2073-4409), 2020, v. 9, n. 5, p. 1270, doi. 10.3390/cells9051270

By:

Błyszczuk, Przemysław;
Zuppinger, Christian;
Costa, Ana;
Nurzynska, Daria;
Di Meglio, Franca;
Stellato, Mara;
Agarkova, Irina;
Smith, Godfrey L.;
Distler, Oliver;
Kania, Gabriela

Publication type:

Article

Structure of the N-glycans from the chlorovirus NE-JV-1.

Published in:

Antonie van Leeuwenhoek, 2017, v. 110, n. 11, p. 1391, doi. 10.1007/s10482-017-0861-3

By:

Speciale, Immacolata;
Agarkova, Irina;
Duncan, Garry;
Etten, James;
Castro, Cristina

Publication type:

Article

Chlorella variabilis NC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex.

Published in:

Plant Cell, 2010, v. 22, n. 9, p. 2943, doi. 10.1105/tpc.110.076406

By:

Blanc, Guillaume;
Duncan, Garry;
Agarkova, Irina;
Borodovsky, Mark;
Gurnon, James;
Kuo, Alan;
Lindquist, Erika;
Lucas, Susan;
Pangilinan, Jasmyn;
Polle, Juergen;
Salamov, Asaf;
Terry, Astrid;
Yamada, Takashi;
Dunigan, David D.;
Grigoriev, Igor V.;
Claverie, Jean-Michel;
Etten, James L. Van

Publication type:

Article

Near-atomic, non-icosahedrally averaged structure of giant virus Paramecium bursaria chlorella virus 1.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34218-4

By:

Shao, Qianqian;
Agarkova, Irina V.;
Noel, Eric A.;
Dunigan, David D.;
Liu, Yunshu;
Wang, Aohan;
Guo, Mingcheng;
Xie, Linlin;
Zhao, Xinyue;
Rossmann, Michael G.;
Van Etten, James L.;
Klose, Thomas;
Fang, Qianglin

Publication type:

Article

Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-158

By:

Jeanniard, Adrien;
Dunigan, David D.;
Gurnon, James R.;
Agarkova, Irina V.;
Ming Kang;
Vitek, Jason;
Duncan, Garry;
McClung, O. William;
Larsen, Megan;
Claverie, Jean-Michel;
Van Etten, James L.;
Blanc, Guillaume

Publication type:

Article

Bacterial Cell Penetration by β.

Published in:

ChemBioChem, 2005, v. 6, n. 6, p. 982, doi. 10.1002/cbic.200400394

By:

Geueke, Birgit;
Namoto, Kenji;
Agarkova, Irina;
Perriard, Jean-Claude;
Kohler, Hans-Peter E.;
Seebach, Dieter

Publication type:

Article

A novel three-dimensional heterotypic spheroid model for the assessment of the activity of cancer immunotherapy agents.

Published in:

Cancer Immunology, Immunotherapy, 2017, v. 66, n. 1, p. 129, doi. 10.1007/s00262-016-1927-1

By:

Herter, Sylvia;
Morra, Laura;
Schlenker, Ramona;
Sulcova, Jitka;
Fahrni, Linda;
Waldhauer, Inja;
Lehmann, Steffi;
Reisländer, Timo;
Agarkova, Irina;
Kelm, Jens;
Klein, Christian;
Umana, Pablo;
Bacac, Marina

Publication type:

Article

N-Linked Glycans of Chloroviruses Sharing a Core Architecture without Precedent.

Published in:

Angewandte Chemie, 2016, v. 128, n. 2, p. 664, doi. 10.1002/ange.201509150

By:

De Castro, Cristina;
Speciale, Immacolata;
Duncan, Garry;
Dunigan, David D.;
Agarkova, Irina;
Lanzetta, Rosa;
Sturiale, Luisa;
Palmigiano, Angelo;
Garozzo, Domenico;
Molinaro, Antonio;
Tonetti, Michela;
Van Etten, James L.

Publication type:

Article

Viral Chemotaxis of Paramecium Bursaria Altered by Algal Endosymbionts.

Published in:

Microbial Ecology, 2023, v. 86, n. 4, p. 2904, doi. 10.1007/s00248-023-02292-w

By:

Ho, Huy V. N.;
Dunigan, David D.;
Salsbery, Miranda E.;
Agarkova, Irina V.;
Al Ameeli, Zeina;
Van Etten, James L.;
DeLong, John P.

Publication type:

Article

EH-myomesin splice isoform is a novel marker for dilated cardiomyopathy.

Published in:

Basic Research in Cardiology, 2011, v. 106, n. 2, p. 233, doi. 10.1007/s00395-010-0131-2

By:

Schoenauer, Roman;
Emmert, Maximilian;
Felley, Allison;
Ehler, Elisabeth;
Brokopp, Chad;
Weber, Benedikt;
Nemir, Mohamed;
Faggian, Giuseppe;
Pedrazzini, Thierry;
Falk, Volkmar;
Hoerstrup, Simon;
Agarkova, Irina

Publication type:

Article

Stabilised beta-catenin in postnatal ventricular myocardium leads to dilated cardiomyopathy and premature death.

Published in:

Basic Research in Cardiology, 2010, v. 105, n. 5, p. 597, doi. 10.1007/s00395-010-0101-8

By:

Hirschy, Alain;
Croquelois, Adrien;
Perriard, Evelyne;
Schoenauer, Roman;
Agarkova, Irina;
Hoerstrup, Simon P.;
Taketo, Makoto M.;
Pedrazzini, Thierry;
Perriard, Jean-Claude;
Ehler, Elisabeth

Publication type:

Article

The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.

Published in:

Genome Biology, 2012, v. 13, n. 5, p. 1, doi. 10.1186/gb-2012-13-5-r39

By:

Blanc, Guillaume;
Agarkova, Irina;
Grimwood, Jane;
Alan Kuo;
Brueggeman, Andrew;
Dunigan, David D.;
Gurnon, James;
Ladunga, Istvan;
Lindquist, Erika;
Lucas, Susan;
Pangilinan, Jasmyn;
Pröschold, Thomas;
Salamov, Asaf;
Schmutz, Jeremy;
Weeks, Donald;
Yamada, Takashi;
Lomsadze, Alexandre;
Borodovsky, Mark;
Claverie, Jean-Michel;
Grigoriev, Igor V.

Publication type:

Article

Deep RNA Sequencing Reveals Hidden Features and Dynamics of Early Gene Transcription in <i>Paramecium bursaria</i> Chlorella Virus 1.

Published in:

PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0090989

By:

Blanc, Guillaume;
Mozar, Michael;
Agarkova, Irina V.;
Gurnon, James R.;
Yanai-Balser, Giane;
Rowe, Janet M.;
Xia, Yuannan;
Riethoven, Jean-Jack;
Dunigan, David D.;
Van Etten, James L.

Publication type:

Article

Cardiomyocyte growth and sarcomerogenesis at the intercalated disc.

Published in:

Cellular & Molecular Life Sciences, 2014, v. 71, n. 1, p. 165, doi. 10.1007/s00018-013-1374-5

By:

Wilson, Amanda;
Schoenauer, Roman;
Ehler, Elisabeth;
Agarkova, Irina;
Bennett, Pauline

Publication type:

Article

N-Linked Glycans of Chloroviruses Sharing a Core Architecture without Precedent.

Published in:

Angewandte Chemie International Edition, 2016, v. 55, n. 2, p. 654, doi. 10.1002/anie.201509150

By:

De Castro, Cristina;
Speciale, Immacolata;
Duncan, Garry;
Dunigan, David D.;
Agarkova, Irina;
Lanzetta, Rosa;
Sturiale, Luisa;
Palmigiano, Angelo;
Garozzo, Domenico;
Molinaro, Antonio;
Tonetti, Michela;
Van Etten, James L.

Publication type:

Article

Near-atomic structure of a giant virus.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08319-6

By:

Fang, Qianglin;
Zhu, Dongjie;
Agarkova, Irina;
Adhikari, Jagat;
Klose, Thomas;
Liu, Yue;
Chen, Zhenguo;
Sun, Yingyuan;
Gross, Michael L.;
Van Etten, James L.;
Zhang, Xinzheng;
Rossmann, Michael G.

Publication type:

Article