Works by Agari, Yoshihiro

Results: 15

The role of ribonucleases in regulating global mRNA levels in the model organism Thermus thermophilus HB8.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-386

By:

Ohyama, Hiromasa;
Sakai, Tomofumi;
Agari, Yoshihiro;
Fukui, Kenji;
Nakagawa, Noriko;
Shinkai, Akeo;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Genome-wide comprehensive analysis of transcriptional regulation by ArgR in Thermus thermophilus.

Published in:

Extremophiles, 2014, v. 18, n. 6, p. 995, doi. 10.1007/s00792-014-0669-2

By:

Iwanaga, Naoki;
Ide, Kaori;
Nagashima, Takeshi;
Tomita, Takeo;
Agari, Yoshihiro;
Shinkai, Akeo;
Kuramitsu, Seiki;
Okada-Hatakeyema, Mariko;
Kuzuyama, Tomohisa;
Nishiyama, Makoto

Publication type:

Article

Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator.

Published in:

Molecular Microbiology, 2014, v. 93, n. 2, p. 390, doi. 10.1111/mmi.12667

By:

Agari, Yoshihiro;
Kashihara, Aiko;
Yokoyama, Shigeyuki;
Kuramitsu, Seiki;
Shinkai, Akeo

Publication type:

Article

Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator.

Published in:

Molecular Microbiology, 2008, v. 70, n. 1, p. 60, doi. 10.1111/j.1365-2958.2008.06388.x

By:

Agari, Yoshihiro;
Kashihara, Aiko;
Yokoyama, Shigeyuki;
Kuramitsu, Seiki;
Shinkai, Akeo

Publication type:

Article

An alkyltransferase-like protein from Thermus thermophilus HB8 affects the regulation of gene expression in alkylation response.

Published in:

Journal of Biochemistry, 2011, v. 150, n. 3, p. 327, doi. 10.1093/jb/mvr052

By:

Morita, Rihito;
Hishinuma, Hisahiro;
Ohyama, Hiromasa;
Mega, Ryosuke;
Ohta, Toshihiro;
Nakagawa, Noriko;
Agari, Yoshihiro;
Fukui, Kenji;
Shinkai, Akeo;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Inactivation of the DNA Repair Genes mutS, mutL or the Anti-Recombination Gene mutS2 Leads to Activation of Vitamin B1 Biosynthesis Genes.

Published in:

PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0019053

By:

Fukui, Kenji;
Wakamatsu, Taisuke;
Agari, Yoshihiro;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Structure and function of a TetR family transcriptional regulator, SbtR, from thermus thermophilus HB8.

Published in:

Proteins, 2013, v. 81, n. 7, p. 1166, doi. 10.1002/prot.24266

By:

Agari, Yoshihiro;
Sakamoto, Keiko;
Yutani, Katsuhide;
Kuramitsu, Seiki;
Shinkai, Akeo

Publication type:

Article

X-ray crystal structure of TTHB099, a CRP/FNR superfamily transcriptional regulator from thermus thermophilus HB8, reveals a DNA-binding protein with no required allosteric effector molecule.

Published in:

Proteins, 2012, v. 80, n. 5, p. 1490, doi. 10.1002/prot.24049

By:

Agari, Yoshihiro;
Kuramitsu, Seiki;
Shinkai, Akeo

Publication type:

Article

Crystal structure of hypothetical protein TTHB210, controlled by the σE/anti-σE regulatory system in Thermus thermophilus HB8, reveals a novel homodecamer.

Published in:

Proteins, 2012, v. 80, n. 3, p. 958, doi. 10.1002/prot.23250

By:

Agari, Yoshihiro;
Kuramitsu, Seiki;
Shinkai, Akeo

Publication type:

Article

X-ray crystal structure of a CRISPR-associated RAMP superfamily protein, Cmr5, from Thermus thermophilus HB8.

Published in:

Proteins, 2010, v. 78, n. 6, p. 1611, doi. 10.1002/prot.22671

By:

Sakamoto, Keiko;
Agari, Yoshihiro;
Agari, Kazuko;
Yokoyama, Shigeyuki;
Kuramitsu, Seiki;
Shinkai, Akeo

Publication type:

Article

X-ray crystal structure of a CRISPR-associated RAMP superfamily protein, Cmr5, from Thermus thermophilus HB8.

Published in:

Proteins, 2009, v. 75, n. 2, p. 528, doi. 10.1002/prot.22358

By:

Sakamoto, Keiko;
Agari, Yoshihiro;
Agari, Kazuko;
Yokoyama, Shigeyuki;
Kuramitsu, Seiki;
Shinkai, Akeo

Publication type:

Article

Crystal structure of TTHA1429, a novel metallo-β-lactamase superfamily protein from Thermus thermophilus HB8.

Published in:

Proteins, 2008, v. 73, n. 4, p. 1053, doi. 10.1002/prot.22215

By:

Yamamura, Akihiro;
Ohtsuka, Jun;
Kubota, Keiko;
Agari, Yoshihiro;
Ebihara, Akio;
Nakagawa, Noriko;
Nagata, Koji;
Tanokura, Masaru

Publication type:

Article

X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermophilus HB8.

Published in:

Proteins, 2008, v. 73, n. 4, p. 1063, doi. 10.1002/prot.22224

By:

Agari, Yoshihiro;
Yokoyama, Shigeyuki;
Kuramitsu, Seiki;
Shinkai, Akeo

Publication type:

Article

X-ray crystal structure of a hypothetical Sua5 protein from Sulfolobus tokodaii strain 7.

Published in:

Proteins, 2008, v. 70, n. 3, p. 1108, doi. 10.1002/prot.21794

By:

Agari, Yoshihiro;
Sato, Shinya;
Wakamatsu, Taisuke;
Bessho, Yoshitaka;
Ebihara, Akio;
Yokoyama, Shigeyuki;
Kuramitsu, Seiki;
Shinkai, Akeo

Publication type:

Article

Crystal structures of a subunit of the formylglycinamide ribonucleotide amidotransferase, PurS, from Thermus thermophilus, Sulfolobus tokodaii and Methanocaldococcus jannaschii.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2016, v. 72, n. 8, p. 627, doi. 10.1107/S2053230X1600978X

By:

Watanabe, Yuzo;
Yanai, Hisaaki;
Kanagawa, Mayumi;
Suzuki, Sakiko;
Tamura, Satoko;
Okada, Kiyoshi;
Baba, Seiki;
Kumasaka, Takashi;
Agari, Yoshihiro;
Chen, Lirong;
Fu, Zheng-Qing;
Chrzas, John;
Wang, Bi-Cheng;
Nakagawa, Noriko;
Ebihara, Akio;
Masui, Ryoji;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki;
Sampei, Gen-ichi;
Kawai, Gota

Publication type:

Article

Works by Agari, Yoshihiro

The role of ribonucleases in regulating global mRNA levels in the model organism Thermus thermophilus HB8.

Genome-wide comprehensive analysis of transcriptional regulation by ArgR in Thermus thermophilus.

Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator.

Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator.

An alkyltransferase-like protein from Thermus thermophilus HB8 affects the regulation of gene expression in alkylation response.

Inactivation of the DNA Repair Genes mutS, mutL or the Anti-Recombination Gene mutS2 Leads to Activation of Vitamin B<sub>1</sub> Biosynthesis Genes.

Structure and function of a TetR family transcriptional regulator, SbtR, from thermus thermophilus HB8.

X-ray crystal structure of TTHB099, a CRP/FNR superfamily transcriptional regulator from thermus thermophilus HB8, reveals a DNA-binding protein with no required allosteric effector molecule.

Crystal structure of hypothetical protein TTHB210, controlled by the σ<sup>E</sup>/anti-σ<sup>E</sup> regulatory system in Thermus thermophilus HB8, reveals a novel homodecamer.

X-ray crystal structure of a CRISPR-associated RAMP superfamily protein, Cmr5, from Thermus thermophilus HB8.

X-ray crystal structure of a CRISPR-associated RAMP superfamily protein, Cmr5, from Thermus thermophilus HB8.

Crystal structure of TTHA1429, a novel metallo-β-lactamase superfamily protein from Thermus thermophilus HB8.

X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermophilus HB8.

X-ray crystal structure of a hypothetical Sua5 protein from Sulfolobus tokodaii strain 7.

Crystal structures of a subunit of the formylglycinamide ribonucleotide amidotransferase, PurS, from Thermus thermophilus, Sulfolobus tokodaii and Methanocaldococcus jannaschii.