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Longevity interventions modulate mechanotransduction and extracellular matrix homeostasis in C. elegans.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-023-44409-2
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- Article
Genetic effects on molecular network states explain complex traits.
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- Molecular Systems Biology, 2023, v. 19, n. 8, p. 1, doi. 10.15252/msb.202211493
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- Article
Correction: An oncogene addiction phosphorylation signature and its derived scores inform tumor responsiveness to targeted therapies.
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- 2023
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- Correction Notice
Phosphorylation‐linked complex profiling identifies assemblies required for Hippo signal integration.
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- Molecular Systems Biology, 2023, v. 19, n. 4, p. 1, doi. 10.15252/msb.202211024
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- Article
Recent advances of data‐independent acquisition mass spectrometry‐based proteomics.
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- Proteomics, 2023, v. 23, n. 7, p. 1, doi. 10.1002/pmic.202200011
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- Article
Quantitative proteomic landscapes of primary and recurrent glioblastoma reveal a protumorigeneic role for FBXO2-dependent glioma-microenvironment interactions.
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- Neuro-Oncology, 2023, v. 25, n. 2, p. 290, doi. 10.1093/neuonc/noac169
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- Article
An oncogene addiction phosphorylation signature and its derived scores inform tumor responsiveness to targeted therapies.
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- Cellular & Molecular Life Sciences, 2023, v. 80, n. 1, p. 1, doi. 10.1007/s00018-022-04634-2
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- Article
Global and precise identification of functional miRNA targets in mESCs by integrative analysis.
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- EMBO Reports, 2022, v. 23, n. 9, p. 1, doi. 10.15252/embr.202254762
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- Article
PCfun: a hybrid computational framework for systematic characterization of protein complex function.
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- Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac239
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- Article
Nucleotide-amino acid π-stacking interactions initiate photo cross-linking in RNA-protein complexes.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30284-w
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- Article
The impact of genomic variation on protein phosphorylation states and regulatory networks.
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- Molecular Systems Biology, 2022, v. 18, n. 5, p. 1, doi. 10.15252/msb.202110712
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- Article
The mouse metallomic landscape of aging and metabolism.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28060-x
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- Article
Molecular architecture of the human tRNA ligase complex.
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- eLife, 2021, p. 1, doi. 10.7554/eLife.71656
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- Article
Phenotypic characterization of two novel cell line models of castration‐resistant prostate cancer.
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- Prostate, 2021, v. 81, n. 15, p. 1159, doi. 10.1002/pros.24210
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- Article
Puf6 primes 60S pre-ribosome nuclear export at low temperature.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24964-2
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- Article
Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial.
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- Molecular Systems Biology, 2021, v. 17, n. 8, p. 1, doi. 10.15252/msb.202110240
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- Article
On the feasibility of deep learning applications using raw mass spectrometry data.
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- Bioinformatics, 2021, v. 37, p. i245, doi. 10.1093/bioinformatics/btab311
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- Article
Systematic detection of functional proteoform groups from bottom-up proteomic datasets.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24030-x
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- Article
From coarse to fine: The absolute Escherichia coli proteome under diverse growth conditions.
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- Molecular Systems Biology, 2021, v. 17, n. 5, p. 1, doi. 10.15252/msb.20209536
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- Article
Mapping specificity, cleavage entropy, allosteric changes and substrates of blood proteases in a high-throughput screen.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21754-8
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- Article
Author Correction: Arabidopsis proteome and the mass spectral assay library.
- Published in:
- 2021
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- Correction Notice
Phosphoproteomics reveals novel modes of function and inter‐relationships among PIKKs in response to genotoxic stress.
- Published in:
- EMBO Journal, 2021, v. 40, n. 2, p. 1, doi. 10.15252/embj.2020104400
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- Publication type:
- Article
Complex-centric proteome profiling by SEC-SWATH-MS for the parallel detection of hundreds of protein complexes.
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- Nature Protocols, 2020, v. 15, n. 8, p. 2341, doi. 10.1038/s41596-020-0332-6
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- Publication type:
- Article
Multi-layered proteomic analyses decode compositional and functional effects of cancer mutations on kinase complexes.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17387-y
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- Publication type:
- Article
4058 Enhanced efficiency of large-scale clinical proteomic studies: when less is more.
- Published in:
- 2020
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- Publication type:
- Abstract
Germ‐free and microbiota‐associated mice yield small intestinal epithelial organoids with equivalent and robust transcriptome/proteome expression phenotypes.
- Published in:
- Cellular Microbiology, 2020, v. 22, n. 6, p. 1, doi. 10.1111/cmi.13191
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- Article
Deciphering MET‐dependent modulation of global cellular responses to DNA damage by quantitative phosphoproteomics.
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- Molecular Oncology, 2020, v. 14, n. 6, p. 1185, doi. 10.1002/1878-0261.12696
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- Publication type:
- Article
ChromID identifies the protein interactome at chromatin marks.
- Published in:
- Nature Biotechnology, 2020, v. 38, n. 6, p. 728, doi. 10.1038/s41587-020-0434-2
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- Article
Publisher Correction: ChromID identifies the protein interactome at chromatin marks.
- Published in:
- 2020
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- Correction Notice
Publisher Correction: OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.
- Published in:
- 2020
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- Publication type:
- Correction Notice
The GTPase Nog1 co-ordinates the assembly, maturation and quality control of distant ribosomal functional centers.
- Published in:
- eLife, 2020, p. 1, doi. 10.7554/eLife.52474
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- Publication type:
- Article
Arabidopsis proteome and the mass spectral assay library.
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- Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0294-0
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- Publication type:
- Article
The MLL1 trimeric catalytic complex is a dynamic conformational ensemble stabilized by multiple weak interactions.
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- Nucleic Acids Research, 2019, v. 47, n. 17, p. 9433, doi. 10.1093/nar/gkz697
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- Article
The interactome of KRAB zinc finger proteins reveals the evolutionary history of their functional diversification.
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- EMBO Journal, 2019, v. 38, n. 18, p. N.PAG, doi. 10.15252/embj.2018101220
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- Publication type:
- Article
CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11759-9
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- Publication type:
- Article
Proteomic identification of a marker signature for MAPKi resistance in melanoma.
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- EMBO Journal, 2019, v. 38, n. 15, p. N.PAG, doi. 10.15252/embj.201695874
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- Publication type:
- Article
Elucidating essential kinases of endothelin signalling by logic modelling of phosphoproteomics data.
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- Molecular Systems Biology, 2019, v. 15, n. 8, p. N.PAG, doi. 10.15252/msb.20198828
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- Publication type:
- Article
A new class of protein biomarkers based on subcellular distribution: application to a mouse liver cancer model.
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- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-43091-z
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- Publication type:
- Article
Complex‐centric proteome profiling by SEC‐SWATH‐MS.
- Published in:
- Molecular Systems Biology, 2019, v. 15, n. 1, p. 1, doi. 10.15252/msb.20188438
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- Publication type:
- Article
Identification of Protein Abundance Changes in Hepatocellular Carcinoma Tissues Using PCT–SWATH.
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- Proteomics - Clinical Applications, 2019, v. 13, n. 1, p. N.PAG, doi. 10.1002/prca.201700179
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- Publication type:
- Article
Systems pharmacology using mass spectrometry identifies critical response nodes in prostate cancer.
- Published in:
- NPJ Systems Biology & Applications, 2018, v. 4, n. 1, p. N.PAG, doi. 10.1038/s41540-018-0064-1
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- Article
Proteomics goes parallel.
- Published in:
- Nature Biotechnology, 2018, v. 36, n. 11, p. 1051, doi. 10.1038/nbt.4288
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- Article
Molecular basis for disassembly of an importin:ribosomal protein complex by the escortin Tsr2.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06160-x
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- Publication type:
- Article
Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial.
- Published in:
- Molecular Systems Biology, 2018, v. 14, n. 8, p. 1, doi. 10.15252/msb.20178126
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- Publication type:
- Article
Lipidated apolipoprotein E4 structure and its receptor binding mechanism determined by a combined cross-linking coupled to mass spectrometry and molecular dynamics approach.
- Published in:
- PLoS Computational Biology, 2018, v. 14, n. 6, p. 1, doi. 10.1371/journal.pcbi.1006165
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- Publication type:
- Article
Structure of a human cap-dependent 48S translation pre-initiation complex.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. 5, p. 2678, doi. 10.1093/nar/gky054
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- Publication type:
- Article
Systematic characterization of pan-cancer mutation clusters.
- Published in:
- Molecular Systems Biology, 2018, v. 14, n. 3, p. 1, doi. 10.15252/msb.20177974
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- Publication type:
- Article
Structural insights into the assembly and polyA signal recognition mechanism of the human CPSF complex.
- Published in:
- eLife, 2017, p. 1, doi. 10.7554/eLife.33111
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- Publication type:
- Article
Molecular basis of AKAP79 regulation by calmodulin.
- Published in:
- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01715-w
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- Publication type:
- Article
Systematic proteome and proteostasis profiling in human Trisomy 21 fibroblast cells.
- Published in:
- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01422-6
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- Publication type:
- Article