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The Phenix‐AlphaFold webservice: Enabling AlphaFold predictions for use in Phenix.
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- Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 5, p. 1, doi. 10.1002/pro.4992
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- Article
An Engineered Laccase from Fomitiporia mediterranea Accelerates Lignocellulose Degradation.
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- Biomolecules (2218-273X), 2024, v. 14, n. 3, p. 324, doi. 10.3390/biom14030324
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- Article
Accounting for nonuniformity of bulk‐solvent: A mosaic model.
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- Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 3, p. 1, doi. 10.1002/pro.4909
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- Article
Improved joint X‐ray and neutron refinement procedure in Phenix.
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- Acta Crystallographica: Section D, Structural Biology, 2023, v. 79, n. 12, p. 1079, doi. 10.1107/S2059798323008914
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Quantitative Analysis of The High‐Yield Hydrolysis of Kelp by Laminarinase and Alginate Lyase.
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- ChemBioChem, 2023, v. 24, n. 20, p. 1, doi. 10.1002/cbic.202300357
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- Article
Overall protein structure quality assessment using hydrogen‐bonding parameters.
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- Acta Crystallographica: Section D, Structural Biology, 2023, v. 79, n. 8, p. 684, doi. 10.1107/S2059798323005077
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- Article
Alkaline-SDS cell lysis of microbes with acetone protein precipitation for proteomic sample preparation in 96-well plate format.
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- PLoS ONE, 2023, v. 18, n. 7, p. 1, doi. 10.1371/journal.pone.0288102
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Efficient structure‐factor modeling for crystals with multiple components.
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- Acta Crystallographica. Section A, Foundations & Advances, 2023, v. 79, n. 4, p. 345, doi. 10.1107/S205327332300356X
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- Article
A Membrane‐Associated Light‐Harvesting Model is Enabled by Functionalized Assemblies of Gene‐Doubled TMV Proteins.
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- Small, 2023, v. 19, n. 20, p. 1, doi. 10.1002/smll.202207805
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- Article
Accelerating crystal structure determination with iterative AlphaFold prediction.
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- Acta Crystallographica: Section D, Structural Biology, 2023, v. 79, n. 3, p. 234, doi. 10.1107/S205979832300102X
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- Article
In situ ligand restraints from quantum‐mechanical methods.
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- Acta Crystallographica: Section D, Structural Biology, 2023, v. 79, n. 2, p. 100, doi. 10.1107/S2059798323000025
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- Article
Low-abundance populations distinguish microbiome performance in plant cell wall deconstruction.
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- Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-022-01377-x
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- Article
Hepatitis C virus NS3/4A inhibitors and other drug-like compounds as covalent binders of SARS-CoV-2 main protease.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-15930-z
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- Article
Scalable and automated CRISPR-based strain engineering using droplet microfluidics.
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- Microsystems & Nanoengineering, 2022, v. 8, n. 1, p. 1, doi. 10.1038/s41378-022-00357-3
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Modular automated bottom-up proteomic sample preparation for high-throughput applications.
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- PLoS ONE, 2022, v. 18, n. 2, p. 1, doi. 10.1371/journal.pone.0264467
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- Article
A multiplexed nanostructure-initiator mass spectrometry (NIMS) assay for simultaneously detecting glycosyl hydrolase and lignin modifying enzyme activities.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-91181-8
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- Article
Experimental and theoretical insights into the effects of pH on catalysis of bond-cleavage by the lignin peroxidase isozyme H8 from Phanerochaete chrysosporium.
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- Biotechnology for Biofuels, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13068-021-01953-7
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- Article
Protein identification from electron cryomicroscopy maps by automated model building and side‐chain matching.
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- Acta Crystallographica: Section D, Structural Biology, 2021, v. 77, n. 4, p. 457, doi. 10.1107/S2059798321001765
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Mechanism Across Scales: A Holistic Modeling Framework Integrating Laboratory and Field Studies for Microbial Ecology.
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- Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.642422
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CERES: a cryo‐EM re‐refinement system for continuous improvement of deposited models.
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- Acta Crystallographica: Section D, Structural Biology, 2021, v. 77, n. 1, p. 48, doi. 10.1107/S2059798320015879
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Arginine off‐kilter: guanidinium is not as planar as restraints denote.
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- Acta Crystallographica: Section D, Structural Biology, 2020, v. 76, n. 12, p. 1159, doi. 10.1107/S2059798320013534
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Characterization of a Metal-Resistant Bacillus Strain With a High Molybdate Affinity ModA From Contaminated Sediments at the Oak Ridge Reservation.
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- Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.587127
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Density modification of cryo‐EM maps.
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- Acta Crystallographica: Section D, Structural Biology, 2020, v. 76, n. 10, p. 912, doi. 10.1107/S205979832001061X
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- Article
Response of Pseudomonas putida to Complex, Aromatic‐Rich Fractions from Biomass.
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- ChemSusChem, 2020, v. 13, n. 17, p. 4455, doi. 10.1002/cssc.202000268
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- Article
An iron (II) dependent oxygenase performs the last missing step of plant lysine catabolism.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16815-3
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- Article
Improved chemistry restraints for crystallographic refinement by integrating the Amber force field into Phenix.
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- Acta Crystallographica: Section D, Structural Biology, 2020, v. 76, n. 1, p. 51, doi. 10.1107/S2059798319015134
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Cryo‐EM map interpretation and protein model‐building using iterative map segmentation.
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- Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 87, doi. 10.1002/pro.3740
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- Article
Methyl ketone production by Pseudomonas putida is enhanced by plant‐derived amino acids.
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- Biotechnology & Bioengineering, 2019, v. 116, n. 8, p. 1909, doi. 10.1002/bit.26995
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Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases.
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- Journal of Industrial Microbiology & Biotechnology, 2019, v. 46, n. 8, p. 1225, doi. 10.1007/s10295-019-02189-z
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Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB).
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- Acta Crystallographica: Section D, Structural Biology, 2019, v. 75, n. 4, p. 451, doi. 10.1107/S2059798319004522
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A rapid methods development workflow for high-throughput quantitative proteomic applications.
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- PLoS ONE, 2019, v. 14, n. 2, p. 1, doi. 10.1371/journal.pone.0211582
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- Article
Iron–sulfur clusters have no right angles.
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- Acta Crystallographica: Section D, Structural Biology, 2019, v. 75, n. 1, p. 16, doi. 10.1107/S205979831801519X
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- Article
Iron‐ and aluminium‐induced depletion of molybdenum in acidic environments impedes the nitrogen cycle.
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- Environmental Microbiology, 2019, v. 21, n. 1, p. 152, doi. 10.1111/1462-2920.14435
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Author Correction: Jungle Express is a versatile repressor system for tight transcriptional control.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07111-2
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Rapid characterization of the activities of lignin-modifying enzymes based on nanostructure-initiator mass spectrometry (NIMS).
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- Biotechnology for Biofuels, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13068-018-1261-2
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- Article
Jungle Express is a versatile repressor system for tight transcriptional control.
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- Nature Communications, 2018, p. 1, doi. 10.1038/s41467-018-05857-3
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- Article
New tools for the analysis and validation of cryo‐EM maps and atomic models.
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- Acta Crystallographica: Section D, Structural Biology, 2018, v. 74, n. 9, p. 814, doi. 10.1107/S2059798318009324
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Evaluation of models determined by neutron diffraction and proposed improvements to their validation and deposition.
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- Acta Crystallographica: Section D, Structural Biology, 2018, v. 74, n. 8, p. 800, doi. 10.1107/S2059798318004588
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From deep TLS validation to ensembles of atomic models built from elemental motions. II. Analysis of TLS refinement results by explicit interpretation.
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- Acta Crystallographica: Section D, Structural Biology, 2018, v. 74, n. 7, p. 621, doi. 10.1107/S2059798318005764
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- Article
Engineering glycoside hydrolase stability by the introduction of zinc binding.
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- Acta Crystallographica: Section D, Structural Biology, 2018, v. 74, n. 7, p. 702, doi. 10.1107/S2059798318006678
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- Article
Real‐space refinement in PHENIX for cryo‐EM and crystallography.
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- Acta Crystallographica: Section D, Structural Biology, 2018, v. 74, n. 6, p. 531, doi. 10.1107/S2059798318006551
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- Article
Automated map sharpening by maximization of detail and connectivity.
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- Acta Crystallographica: Section D, Structural Biology, 2018, v. 74, n. 6, p. 545, doi. 10.1107/S2059798318004655
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- Article
Toward industrial production of isoprenoids in <italic>Escherichia coli</italic>: Lessons learned from CRISPR‐Cas9 based optimization of a chromosomally integrated mevalonate pathway.
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- Biotechnology & Bioengineering, 2018, v. 115, n. 4, p. 1000, doi. 10.1002/bit.26530
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<italic>DiSCaMB</italic>: a software library for aspherical atom model X‐ray scattering factor calculations with CPUs and GPUs.
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- Journal of Applied Crystallography, 2018, v. 51, n. 1, p. 193, doi. 10.1107/S1600576717015825
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Interactive comparison and remediation of collections of macromolecular structures.
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- Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 182, doi. 10.1002/pro.3296
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- Article
MolProbity: More and better reference data for improved all-atom structure validation.
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- Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 293, doi. 10.1002/pro.3330
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- Article
Expression of naturally ionic liquid-tolerant thermophilic cellulases in Aspergillus niger.
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- PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0189604
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- Article
Berkeley Screen: a set of 96 solutions for general macromolecular crystallization.
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- Journal of Applied Crystallography, 2017, v. 50, n. 5, p. 1352, doi. 10.1107/S1600576717011347
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- Article
Production of jet fuel precursor monoterpenoids from engineered Escherichia coli.
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- Biotechnology & Bioengineering, 2017, v. 114, n. 8, p. 1703, doi. 10.1002/bit.26296
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- Article
Plant cell wall glycosyltransferases: High-throughput recombinant expression screening and general requirements for these challenging enzymes.
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- PLoS ONE, 2017, v. 12, n. 6, p. 1, doi. 10.1371/journal.pone.0177591
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- Article