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Genome-wide analysis and visualization of copy number with CNVpytor in igv.js.
- Published in:
- Bioinformatics, 2024, v. 40, n. 8, p. 1, doi. 10.1093/bioinformatics/btae453
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- Publication type:
- Article
A comprehensive analysis of non-sequential alignments between allprotein structures.
- Published in:
- BMC Structural Biology, 2007, v. 7, p. 78, doi. 10.1186/1472-6807-7-78
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- Publication type:
- Article
Correction: All<sup>2</sup>: A tool for selecting mosaic mutations from comprehensive multi-cell comparisons.
- Published in:
- 2022
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- Publication type:
- Correction Notice
Efficient reconstruction of cell lineage trees for cell ancestry and cancer.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. 10, p. e57, doi. 10.1093/nar/gkad254
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- Publication type:
- Article
A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals.
- Published in:
- Nature Communications, 2016, v. 7, n. 4, p. 11101, doi. 10.1038/ncomms11101
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- Publication type:
- Article
Erratum: Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms.
- Published in:
- Nature Communications, 2015, v. 6, n. 9, p. 8389, doi. 10.1038/ncomms9389
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- Publication type:
- Article
Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms.
- Published in:
- Nature Communications, 2015, v. 6, n. 6, p. 7256, doi. 10.1038/ncomms8256
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- Publication type:
- Article
All<sup>2</sup>: A tool for selecting mosaic mutations from comprehensive multi-cell comparisons.
- Published in:
- PLoS Computational Biology, 2022, v. 18, n. 4, p. 1, doi. 10.1371/journal.pcbi.1009487
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- Publication type:
- Article
Architecture of the human regulatory network derived from ENCODE data.
- Published in:
- Nature, 2012, v. 489, n. 7414, p. 91, doi. 10.1038/nature11245
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- Publication type:
- Article
Mapping copy number variation by population-scale genome sequencing.
- Published in:
- Nature, 2011, v. 470, n. 7332, p. 59, doi. 10.1038/nature09708
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- Publication type:
- Article
Integration of protein motions with molecular networks reveals different mechanisms for permanent and transient interactions.
- Published in:
- Protein Science: A Publication of the Protein Society, 2011, v. 20, n. 10, p. 1745, doi. 10.1002/pro.710
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- Publication type:
- Article
Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point.
- Published in:
- Protein Science: A Publication of the Protein Society, 2004, v. 13, n. 7, p. 1865, doi. 10.1110/ps.04672604
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- Publication type:
- Article
Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans.
- Published in:
- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3658-x
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- Publication type:
- Article
Somatic genomic mosaicism in the brain during aging: Scratching the surface.
- Published in:
- Clinical & Translational Medicine, 2022, v. 12, n. 12, p. 1, doi. 10.1002/ctm2.1138
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- Publication type:
- Article
Analysis of Combinatorial Regulation: Scaling of Partnerships between Regulators with the Number of Governed Targets.
- Published in:
- PLoS Computational Biology, 2010, v. 6, n. 5, p. 1, doi. 10.1371/journal.pcbi.1000755
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- Publication type:
- Article
An AP Endonuclease 1--DNA Polymerase β Complex: Theoretical Prediction of Interacting Surfaces.
- Published in:
- PLoS Computational Biology, 2008, v. 4, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000066
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- Publication type:
- Article
LongAGE: defining breakpoints of genomic structural variants through optimal and memory efficient alignments of long reads.
- Published in:
- Bioinformatics, 2021, v. 37, n. 7, p. 1015, doi. 10.1093/bioinformatics/btaa703
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- Publication type:
- Article
Testing of candidate single nucleotide variants associated with paclitaxel neuropathy in the trial NCCTG N08C1 (Alliance).
- Published in:
- Cancer Medicine, 2016, v. 5, n. 4, p. 631, doi. 10.1002/cam4.625
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- Publication type:
- Article
Genome-Wide Mapping of Copy Number Variation in Humans: Comparative Analysis of High Resolution Array Platforms.
- Published in:
- PLoS ONE, 2011, v. 6, n. 11, p. 1, doi. 10.1371/journal.pone.0027859
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- Publication type:
- Article
An integrated map of structural variation in 2,504 human genomes.
- Published in:
- Nature, 2015, v. 526, n. 7571, p. 75, doi. 10.1038/nature15394
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- Publication type:
- Article
Somatic copy number mosaicism in human skin revealed by induced pluripotent stem cells.
- Published in:
- Nature, 2012, v. 492, n. 7429, p. 438, doi. 10.1038/nature11629
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- Publication type:
- Article
Annual Research Review: The promise of stem cell research for neuropsychiatric disorders.
- Published in:
- Journal of Child Psychology, 2011, v. 52, n. 4, p. 504, doi. 10.1111/j.1469-7610.2010.02348.x
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- Publication type:
- Article
RigidFinder: A fast and sensitive method to detect rigid blocks in large macromolecular complexes.
- Published in:
- Proteins, 2010, v. 78, n. 2, p. 309, doi. 10.1002/prot.22544
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- Publication type:
- Article
CNVpytor: a tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing.
- Published in:
- GigaScience, 2021, v. 10, n. 11, p. 1, doi. 10.1093/gigascience/giab074
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- Publication type:
- Article
Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 8, p. 3846, doi. 10.1093/nar/gkz169
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- Publication type:
- Article
Chromatin organization modulates the origin of heritable structural variations in human genome.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 6, p. 2766, doi. 10.1093/nar/gkz103
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- Publication type:
- Article
Child Development and Structural Variation in the Human Genome.
- Published in:
- Child Development, 2013, v. 84, n. 1, p. 34, doi. 10.1111/cdev.12051
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- Publication type:
- Article
MetaSV: an accurate and integrative structural-variant caller for next generation sequencing.
- Published in:
- 2015
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- Publication type:
- Product Review
VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications.
- Published in:
- 2015
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- Publication type:
- Product Review
AGE: defining breakpoints of genomic structural variants at single-nucleotide resolution, through optimal alignments with gap excision.
- Published in:
- Bioinformatics, 2011, v. 27, n. 5, p. 595, doi. 10.1093/bioinformatics/btq713
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- Publication type:
- Article
Structure SNP (StSNP): a web server for mapping and modeling nsSNPs on protein structures with linkage to metabolic pathways.
- Published in:
- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W384, doi. 10.1093/nar/gkm232
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- Publication type:
- Article
TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method.
- Published in:
- Nucleic Acids Research, 2007, v. 35, p. d317, doi. 10.1093/nar/gkl809
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- Publication type:
- Article
Patient-reported (EORTC QLQ-CIPN20) versus physician-reported (CTCAE) quantification of oxaliplatin- and paclitaxel/carboplatin-induced peripheral neuropathy in NCCTG/Alliance clinical trials.
- Published in:
- 2017
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- Publication type:
- journal article
Comparative transcriptome and gene regulation in human iPSC-derived organoids and donor-identical brain tissue.
- Published in:
- 2017
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- Publication type:
- Abstract
Control-independent mosaic single nucleotide variant detection with DeepMosaic.
- Published in:
- Nature Biotechnology, 2023, v. 41, n. 6, p. 870, doi. 10.1038/s41587-022-01559-w
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- Publication type:
- Article
SCELLECTOR: ranking amplification bias in single cells using shallow sequencing.
- Published in:
- BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03858-y
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- Publication type:
- Article
Landscape and variation of novel retroduplications in 26 human populations.
- Published in:
- PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005567
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- Publication type:
- Article
Characterization of enhancer activity in early human neurodevelopment using Massively Parallel Reporter Assay (MPRA) and forebrain organoids.
- Published in:
- Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-54302-7
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- Publication type:
- Article
Adult diffuse glioma GWAS by molecular subtype identifies variants in D2HGDH and FAM20C.
- Published in:
- Neuro-Oncology, 2020, v. 22, n. 11, p. 1602, doi. 10.1093/neuonc/noaa117
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- Publication type:
- Article
AlleleSeq: analysis of allele-specific expression and binding in a network framework.
- Published in:
- Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.54
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- Publication type:
- Article