Found: 16

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  • Dynamic regulation of epigenomic landscapes during hematopoiesis.

    Published in:
    BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-193
    By:
    • Abraham, Brian J.;
    • Kairong Cui;
    • Qingsong Tang;
    • Keji Zhao
    Publication type:
    Article

  • SEAseq: a portable and cloud-based chromatin occupancy analysis suite.

    Published in:
    BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04588-z
    By:
    • O. Adetunji, Modupeore;
    • J. Abraham, Brian
    Publication type:
    Article

  • SEAseq: a portable and cloud-based chromatin occupancy analysis suite.

    Published in:
    BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04588-z
    By:
    • O. Adetunji, Modupeore;
    • J. Abraham, Brian
    Publication type:
    Article

  • Corrigendum: Small genomic insertions form enhancers that misregulate oncogenes.

    Published in:
    Nature Communications, 2017, v. 8, n. 6, p. 15797, doi. 10.1038/ncomms15797
    By:
    • Abraham, Brian J.;
    • Hnisz, Denes;
    • Weintraub, Abraham S.;
    • Kwiatkowski, Nicholas;
    • Li, Charles H.;
    • Li, Zhaodong;
    • Weichert-Leahey, Nina;
    • Rahman, Sunniyat;
    • Liu, Yu;
    • Etchin, Julia;
    • Li, Benshang;
    • Shen, Shuhong;
    • Lee, Tong Ihn;
    • Zhang, Jinghui;
    • Look, A. Thomas;
    • Mansour, Marc R.;
    • Young, Richard A.
    Publication type:
    Article

  • A CD47-associated super-enhancer links pro-inflammatory signalling to CD47 upregulation in breast cancer.

    Published in:
    Nature Communications, 2017, v. 8, n. 4, p. 14802, doi. 10.1038/ncomms14802
    By:
    • Betancur, Paola A.;
    • Abraham, Brian J.;
    • Yiu, Ying Y.;
    • Willingham, Stephen B.;
    • Khameneh, Farnaz;
    • Zarnegar, Mark;
    • Kuo, Angera H.;
    • McKenna, Kelly;
    • Kojima, Yoko;
    • Leeper, Nicholas J.;
    • Ho, Po;
    • Gip, Phung;
    • Swigut, Tomek;
    • Sherwood, Richard I.;
    • Clarke, Michael F.;
    • Somlo, George;
    • Young, Richard A.;
    • Weissman, Irving L.
    Publication type:
    Article

  • Small genomic insertions form enhancers that misregulate oncogenes.

    Published in:
    Nature Communications, 2017, v. 8, n. 2, p. 14385, doi. 10.1038/ncomms14385
    By:
    • Abraham, Brian J.;
    • Hnisz, Denes;
    • Weintraub, Abraham S.;
    • Kwiatkowski, Nicholas;
    • Li, Charles H.;
    • Li, Zhaodong;
    • Weichert-Leahey, Nina;
    • Rahman, Sunniyat;
    • Liu, Yu;
    • Etchin, Julia;
    • Li, Benshang;
    • Shen, Shuhong;
    • Lee, Tong Ihn;
    • Zhang, Jinghui;
    • Look, A. Thomas;
    • Mansour, Marc R.;
    • Young, Richard A.
    Publication type:
    Article

  • Integrated genomic analyses of de novo pathways underlying atypical meningiomas.

    Published in:
    Nature Communications, 2017, v. 8, n. 2, p. 14433, doi. 10.1038/ncomms14433
    By:
    • Harmancı, Akdes Serin;
    • Youngblood, Mark W.;
    • Clark, Victoria E.;
    • Coşkun, Süleyman;
    • Henegariu, Octavian;
    • Duran, Daniel;
    • Erson-Omay, E. Zeynep;
    • Kaulen, Leon D.;
    • Lee, Tong Ihn;
    • Abraham, Brian J.;
    • Simon, Matthias;
    • Krischek, Boris;
    • Timmer, Marco;
    • Goldbrunner, Roland;
    • Omay, S. Bülent;
    • Baranoski, Jacob;
    • Baran, Burçin;
    • Carrión-Grant, Geneive;
    • Bai, Hanwen;
    • Mishra-Gorur, Ketu
    Publication type:
    Article

  • The long noncoding RNA Wisper controls cardiac fibrosis and remodeling.

    Published in:
    Science Translational Medicine, 2017, v. 9, n. 395, p. 1, doi. 10.1126/scitranslmed.aai9118
    By:
    • Micheletti, Rudi;
    • Plaisance, Isabelle;
    • Abraham, Brian J.;
    • Sarre, Alexandre;
    • Ching-Chia Ting;
    • Alexanian, Michael;
    • Maric, Daniel;
    • Maison, Damien;
    • Nemir, Mohamed;
    • Young, Richard A.;
    • Schroen, Blanche;
    • González, Arantxa;
    • Ounzain, Samir;
    • Pedrazzini, Thierry
    Publication type:
    Article

  • Integrated genomic analyses of de novo pathways underlying atypical meningiomas.

    Published in:
    Nature Communications, 2018, v. 9, p. 16215, doi. 10.1038/ncomms16215
    By:
    • Harmancı, Akdes Serin;
    • Youngblood, Mark W.;
    • Clark, Victoria E.;
    • Coşkun, Süleyman;
    • Henegariu, Octavian;
    • Duran, Daniel;
    • Erson-Omay, E. Zeynep;
    • Kaulen, Leon D.;
    • Lee, Tong Ihn;
    • Abraham, Brian J.;
    • Simon, Matthias;
    • Krischek, Boris;
    • Timmer, Marco;
    • Goldbrunner, Roland;
    • Omay, S. Bülent;
    • Baranoski, Jacob;
    • Baran, Burçin;
    • Carrión-Grant, Geneive;
    • Bai, Hanwen;
    • Mishra-Gorur, Ketu
    Publication type:
    Article

  • Super-enhancer-based identification of a BATF3/IL-2R−module reveals vulnerabilities in anaplastic large cell lymphoma.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25379-9
    By:
    • Liang, Huan-Chang;
    • Costanza, Mariantonia;
    • Prutsch, Nicole;
    • Zimmerman, Mark W.;
    • Gurnhofer, Elisabeth;
    • Montes-Mojarro, Ivonne A.;
    • Abraham, Brian J.;
    • Prokoph, Nina;
    • Stoiber, Stefan;
    • Tangermann, Simone;
    • Lobello, Cosimo;
    • Oppelt, Jan;
    • Anagnostopoulos, Ioannis;
    • Hielscher, Thomas;
    • Pervez, Shahid;
    • Klapper, Wolfram;
    • Zammarchi, Francesca;
    • Silva, Daniel-Adriano;
    • Garcia, K. Christopher;
    • Baker, David
    Publication type:
    Article

  • Targeting transcription regulation in cancer with a covalent CDK7 inhibitor.

    Published in:
    Nature, 2014, v. 511, n. 7511, p. 616, doi. 10.1038/nature13393
    By:
    • Kwiatkowski, Nicholas;
    • Zhang, Tinghu;
    • Rahl, Peter B.;
    • Abraham, Brian J.;
    • Reddy, Jessica;
    • Ficarro, Scott B.;
    • Dastur, Anahita;
    • Amzallag, Arnaud;
    • Ramaswamy, Sridhar;
    • Tesar, Bethany;
    • Jenkins, Catherine E.;
    • Hannett, Nancy M.;
    • McMillin, Douglas;
    • Sanda, Takaomi;
    • Sim, Taebo;
    • Kim, Nam Doo;
    • Look, Thomas;
    • Mitsiades, Constantine S.;
    • Weng, Andrew P.;
    • Brown, Jennifer R.
    Publication type:
    Article

  • BRD2 interconnects with BRD3 to facilitate Pol II transcription initiation and elongation to prime promoters for cell differentiation.

    Published in:
    Cellular & Molecular Life Sciences, 2022, v. 79, n. 6, p. 1, doi. 10.1007/s00018-022-04349-4
    By:
    • Wang, Chenlu;
    • Xu, Qiqin;
    • Zhang, Xianhong;
    • Day, Daniel S.;
    • Abraham, Brian J.;
    • Lun, Kehuan;
    • Chen, Liang;
    • Huang, Jie;
    • Ji, Xiong
    Publication type:
    Article

  • PAX3-FOXO1 dictates myogenic reprogramming and rhabdomyosarcoma identity in endothelial progenitors.

    Published in:
    Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-43044-1
    By:
    • Searcy, Madeline B.;
    • Larsen IV, Randolph K.;
    • Stevens, Bradley T.;
    • Zhang, Yang;
    • Jin, Hongjian;
    • Drummond, Catherine J.;
    • Langdon, Casey G.;
    • Gadek, Katherine E.;
    • Vuong, Kyna;
    • Reed, Kristin B.;
    • Garcia, Matthew R.;
    • Xu, Beisi;
    • Kimbrough, Darden W.;
    • Adkins, Grace E.;
    • Djekidel, Nadhir;
    • Porter, Shaina N.;
    • Schreiner, Patrick A.;
    • Pruett-Miller, Shondra M.;
    • Abraham, Brian J.;
    • Rehg, Jerold E.
    Publication type:
    Article

  • Synergistic Anti-Tumor Effect of Combining Selective CDK7 and BRD4 Inhibition in Neuroblastoma.

    Published in:
    Frontiers in Oncology, 2022, v. 12, p. 1, doi. 10.3389/fonc.2021.773186
    By:
    • Gao, Yang;
    • Volegova, Marina;
    • Nasholm, Nicole;
    • Das, Sanjukta;
    • Kwiatkowski, Nicholas;
    • Abraham, Brian J.;
    • Zhang, Tinghu;
    • Gray, Nathanael S.;
    • Gustafson, Clay;
    • Krajewska, Malgorzata;
    • George, Rani E.
    Publication type:
    Article

  • ASCL1 is a MYCN- and LMO1-dependent member of the adrenergic neuroblastoma core regulatory circuitry.

    Published in:
    Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-13515-5
    By:
    • Wang, Lu;
    • Tan, Tze King;
    • Durbin, Adam D.;
    • Zimmerman, Mark W.;
    • Abraham, Brian J.;
    • Tan, Shi Hao;
    • Ngoc, Phuong Cao Thi;
    • Weichert-Leahey, Nina;
    • Akahane, Koshi;
    • Lawton, Lee N.;
    • Rokita, Jo Lynne;
    • Maris, John M.;
    • Young, Richard A.;
    • Look, A. Thomas;
    • Sanda, Takaomi
    Publication type:
    Article

  • MEIS2 Is an Adrenergic Core Regulatory Transcription Factor Involved in Early Initiation of TH-MYCN-Driven Neuroblastoma Formation.

    Published in:
    Cancers, 2021, v. 13, n. 19, p. 4783, doi. 10.3390/cancers13194783
    By:
    • De Wyn, Jolien;
    • Zimmerman, Mark W.;
    • Weichert-Leahey, Nina;
    • Nunes, Carolina;
    • Cheung, Belamy B.;
    • Abraham, Brian J.;
    • Beckers, Anneleen;
    • Volders, Pieter-Jan;
    • Decaesteker, Bieke;
    • Carter, Daniel R.;
    • Look, Alfred Thomas;
    • De Preter, Katleen;
    • Van Loocke, Wouter;
    • Marshall, Glenn M.;
    • Durbin, Adam D.;
    • Speleman, Frank;
    • Durinck, Kaat
    Publication type:
    Article