Works by Abbott, D. Wade

Results: 46

The glycoconjugate-degrading enzymes of Clostridium perfringens: Tailored catalysts for breaching the intestinal mucus barrier.
Published in:
Glycobiology, 2021, v. 31, n. 6, p. 681, doi. 10.1093/glycob/cwaa050
By:
- Low, Kristin E;
- Smith, Steven P;
- Abbott, D Wade;
- Boraston, Alisdair B
Publication type:
Article
In vitro and ex vivo metabolism of chemically diverse fructans by bovine rumen Bifidobacterium and Lactobacillus species.
Published in:
Animal Microbiome, 2024, v. 6, n. 1, p. 1, doi. 10.1186/s42523-024-00328-1
By:
- King, Marissa L.;
- Xing, Xiaohui;
- Reintjes, Greta;
- Klassen, Leeann;
- Low, Kristin E.;
- Alexander, Trevor W.;
- Waldner, Matthew;
- Patel, Trushar R.;
- Wade Abbott, D.
Publication type:
Article
Evaluation of Rumen Fermentation and Microbial Adaptation to Three Red Seaweeds Using the Rumen Simulation Technique.
Published in:
Animals (2076-2615), 2023, v. 13, n. 10, p. 1643, doi. 10.3390/ani13101643
By:
- Terry, Stephanie A.;
- Krüger, Ana M.;
- Lima, Paulo M. T.;
- Gruninger, Robert J.;
- Abbott, D. Wade;
- Beauchemin, Karen A.
Publication type:
Article
Expeller-Pressed Canola (Brassica napus) Meal Modulates the Structure and Function of the Cecal Microbiota, and Alters the Metabolome of the Pancreas, Liver, and Breast Muscle of Broiler Chickens.
Published in:
Animals (2076-2615), 2021, v. 11, n. 2, p. 577, doi. 10.3390/ani11020577
By:
- Inglis, G. Douglas;
- Wright, Benjamin D.;
- Sheppard, Stephanie A.;
- Abbott, D. Wade;
- Oryschak, Matt A.;
- Montina, Tony;
- Gonzalez, John Michael;
- Owens, Casey M.
Publication type:
Article
Seaweed and Seaweed Bioactives for Mitigation of Enteric Methane: Challenges and Opportunities.
Published in:
Animals (2076-2615), 2020, v. 10, n. 12, p. 2432, doi. 10.3390/ani10122432
By:
- Abbott, D. Wade;
- Aasen, Inga Marie;
- Beauchemin, Karen A.;
- Grondahl, Fredrik;
- Gruninger, Robert;
- Hayes, Maria;
- Huws, Sharon;
- Kenny, David A.;
- Krizsan, Sophie J.;
- Kirwan, Stuart F.;
- Lind, Vibeke;
- Meyer, Ulrich;
- Ramin, Mohammad;
- Theodoridou, Katerina;
- von Soosten, Dirk;
- Walsh, Pamela J.;
- Waters, Sinéad;
- Xing, Xiaohui
Publication type:
Article
Corticosterone-mediated physiological stress modulates hepatic lipid metabolism, metabolite profiles, and systemic responses in chickens.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-52267-6
By:
- Zaytsoff, Sarah J. M.;
- Brown, Catherine L. J.;
- Montina, Tony;
- Metz, Gerlinde A. S.;
- Abbott, D. Wade;
- Uwiera, Richard R. E.;
- Inglis, G. Douglas
Publication type:
Article
Engineering dual-glycan responsive expression systems for tunable production of heterologous proteins in Bacteroides thetaiotaomicron.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-53726-w
By:
- Jones, Darryl R.;
- Smith, Marshall B.;
- McLean, Richard;
- Grondin, Julie M.;
- Amundsen, Carolyn R.;
- Inglis, G. Douglas;
- Selinger, Brent;
- Abbott, D. Wade
Publication type:
Article
Erratum to: Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes.
Published in:
Genome Biology & Evolution, 2021, v. 13, n. 6, p. 1, doi. 10.1093/gbe/evab129
By:
- Tagirdzhanova, Gulnara;
- Saary, Paul;
- Tingley, Jeffrey P;
- Díaz-Escandón, David;
- Abbott, D Wade;
- Finn, Robert D;
- Spribille, Toby
Publication type:
Article
Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes.
Published in:
Genome Biology & Evolution, 2021, v. 13, n. 4, p. 1, doi. 10.1093/gbe/evab047
By:
- Tagirdzhanova, Gulnara;
- Saary, Paul;
- Tingley, Jeffrey P;
- Díaz-Escandón, David;
- Abbott, D Wade;
- Finn, Robert D;
- Spribille, Toby
Publication type:
Article
Correction to: Combined whole cell wall analysis and streamlined in silico carbohydrate‑active enzyme discovery to improve biocatalytic conversion of agricultural crop residues.
Published in:
2021
By:
- Tingley, Jeffrey P.;
- Low, Kristin E.;
- Xing, Xiaohui;
- Abbott, D. Wade
Publication type:
Correction Notice
Combined whole cell wall analysis and streamlined in silico carbohydrate-active enzyme discovery to improve biocatalytic conversion of agricultural crop residues.
Published in:
Biotechnology for Biofuels, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13068-020-01869-8
By:
- Tingley, Jeffrey P.;
- Low, Kristin E.;
- Xing, Xiaohui;
- Abbott, D. Wade
Publication type:
Article
Correction to: Combined whole cell wall analysis and streamlined in silico carbohydrate‑active enzyme discovery to improve biocatalytic conversion of agricultural crop residues.
Published in:
2021
By:
- Tingley, Jeffrey P.;
- Low, Kristin E.;
- Xing, Xiaohui;
- Abbott, D. Wade
Publication type:
Correction Notice
Combined whole cell wall analysis and streamlined in silico carbohydrate-active enzyme discovery to improve biocatalytic conversion of agricultural crop residues.
Published in:
Biotechnology for Biofuels, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13068-020-01869-8
By:
- Tingley, Jeffrey P.;
- Low, Kristin E.;
- Xing, Xiaohui;
- Abbott, D. Wade
Publication type:
Article
An Ancestral Member of the Polysaccharide Lyase Family 2 Displays Endolytic Activity and Magnesium Dependence.
Published in:
Applied Biochemistry & Biotechnology, 2013, v. 171, n. 7, p. 1911, doi. 10.1007/s12010-013-0483-9
By:
- Abbott, D. Wade;
- Thomas, Dallas;
- Pluvinage, Benjamin;
- Boraston, Alisdair B.
Publication type:
Article
Development of a spore-based mucosal vaccine against the bovine respiratory pathogen Mannheimia haemolytica.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-29732-4
By:
- Uddin, Muhammed Salah;
- Guluarte, Jose Ortiz;
- Abbott, D. Wade;
- Inglis, G. Douglas;
- Guan, Le Luo;
- Alexander, Trevor W.
Publication type:
Article
Development of a spore-based mucosal vaccine against the bovine respiratory pathogen Mannheimia haemolytica.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-29732-4
By:
- Uddin, Muhammed Salah;
- Guluarte, Jose Ortiz;
- Abbott, D. Wade;
- Inglis, G. Douglas;
- Guan, Le Luo;
- Alexander, Trevor W.
Publication type:
Article
Recognition and Degradation of Plant Cell Wall Polysaccharides by Two Human Gut Symbionts.
Published in:
PLoS Biology, 2011, v. 9, n. 12, p. 1, doi. 10.1371/journal.pbio.1001221
By:
- Martens, Eric C.;
- Lowe, Elisabeth C.;
- Chiang, Herbert;
- Pudlo, Nicholas A.;
- Meng Wu;
- McNulty, Nathan P.;
- Abbott, D. Wade;
- Henrissat, Bernard;
- Gilbert, Harry J.;
- Bolam, David N.;
- Gordon, Jeffrey I.
Publication type:
Article
Contributions of a unique β-clamp to substrate recognition illuminates the molecular basis of exolysis in ferulic acid esterases.
Published in:
Biochemical Journal, 2016, v. 473, n. 7, p. 839, doi. 10.1042/BJ20151153
By:
- Gruninger, Robert J.;
- Cote, Chris;
- McAllister, Tim A.;
- Wade Abbott, D.
Publication type:
Article
Combinatorial Glycomic Analyses to Direct CAZyme Discovery for the Tailored Degradation of Canola Meal Non-Starch Dietary Polysaccharides.
Published in:
Microorganisms, 2020, v. 8, n. 12, p. 1888, doi. 10.3390/microorganisms8121888
By:
- Low, Kristin E.;
- Xing, Xiaohui;
- Moote, Paul E.;
- Inglis, G. Douglas;
- Venketachalam, Sivasankari;
- Hahn, Michael G.;
- King, Marissa L.;
- Tétard-Jones, Catherine Y.;
- Jones, Darryl R.;
- Willats, William G. T.;
- Slominski, Bogdan A.;
- Abbott, D. Wade
Publication type:
Article
SACCHARIS: an automated pipeline to streamline discovery of carbohydrate active enzyme activities within polyspecific families and de novo sequence datasets.
Published in:
Biotechnology for Biofuels, 2018, v. 11, n. 1, p. 1, doi. 10.1186/s13068-018-1027-x
By:
- Jones, Darryl R.;
- Thomas, Dallas;
- Alger, Nicholas;
- Ghavidel, Ata;
- Inglis, G. Douglas;
- Abbott, D. Wade
Publication type:
Article
Application of culturomics to characterize diverse anaerobic bacteria from the gastrointestinal tract of broiler chickens in relation to environmental reservoirs.
Published in:
Canadian Journal of Microbiology, 2020, v. 66, n. 4, p. 288, doi. 10.1139/cjm-2019-0469
By:
- Moote, Paul E.;
- Zaytsoff, Sarah J.M.;
- Ortega Polo, Rodrigo;
- Abbott, D. Wade;
- Uwiera, Richard R.E.;
- Inglis, G. Douglas
Publication type:
Article
The nasopharyngeal microbiota of beef cattle before and after transport to a feedlot.
Published in:
BMC Microbiology, 2017, v. 17, p. 1, doi. 10.1186/s12866-017-0978-6
By:
- Holman, Devin B.;
- Timsit, Edouard;
- Amat, Samat;
- Wade Abbott, D.;
- Buret, Andre G.;
- Alexander, Trevor W.
Publication type:
Article
Molecular basis of an agarose metabolic pathway acquired by a human intestinal symbiont.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03366-x
By:
- Pluvinage, Benjamin;
- Grondin, Julie M.;
- Amundsen, Carolyn;
- Klassen, Leeann;
- Moote, Paul E.;
- Yao Xiao;
- Thomas, Dallas;
- Pudlo, Nicholas A.;
- Anele, Anuoluwapo;
- Martens, Eric C.;
- Inglis, G. Douglas;
- Uwiera, Richard E. R.;
- Boraston, Alisdair B.;
- Abbott, D. Wade
Publication type:
Article
Characterization of Unfractionated Polysaccharides in Brown Seaweed by Methylation-GC-MS-Based Linkage Analysis.
Published in:
Marine Drugs, 2024, v. 22, n. 10, p. 464, doi. 10.3390/md22100464
By:
- Bajwa, Barinder;
- Xing, Xiaohui;
- Serin, Spencer C.;
- Hayes, Maria;
- Terry, Stephanie A.;
- Gruninger, Robert J.;
- Abbott, D. Wade
Publication type:
Article
Methylation-GC-MS/FID-Based Glycosidic Linkage Analysis of Unfractionated Polysaccharides in Red Seaweeds.
Published in:
Marine Drugs, 2024, v. 22, n. 5, p. 192, doi. 10.3390/md22050192
By:
- Bajwa, Barinder;
- Xing, Xiaohui;
- Terry, Stephanie A.;
- Gruninger, Robert J.;
- Abbott, D. Wade
Publication type:
Article
Effect of ammonia fiber expansion-treated wheat straw and a recombinant fibrolytic enzyme on rumen microbiota and fermentation parameters, total tract digestibility, and performance of lambs.
Published in:
Journal of Animal Science, 2020, v. 98, n. 5, p. N.PAG, doi. 10.1093/jas/skaa116
By:
- Ribeiro, Gabriel O;
- Gruninger, Robert J;
- Jones, Darryl R;
- Beauchemin, Karen A;
- Yang, Wen Zhu;
- Wang, Yuxi;
- Abbott, D Wade;
- Tsang, Adrian;
- McAllister, Tim A
Publication type:
Article
Comparative analysis of macroalgae supplementation on the rumen microbial community: Asparagopsis taxiformis inhibits major ruminal methanogenic, fibrolytic, and volatile fatty acid-producing microbes in vitro.
Published in:
Frontiers in Microbiology, 2023, v. 14, p. 1, doi. 10.3389/fmicb.2023.1104667
By:
- O'Hara, Eóin;
- Terry, Stephanie A.;
- Moote, Paul;
- Beauchemin, Karen A.;
- McAllister, Tim A.;
- Abbott, D. Wade;
- Gruninger, Robert J.
Publication type:
Article
Fluorescence activated cell sorting and fermentation analysis to study rumen microbiome responses to administered live microbials and yeast cell wall derived prebiotics.
Published in:
Frontiers in Microbiology, 2023, v. 14, p. 1, doi. 10.3389/fmicb.2022.1020250
By:
- Klassen, Leeann;
- Reintjes, Greta;
- Meiying Li;
- Long Jin;
- Amundsen, Carolyn;
- Xiaohui Xing;
- Dridi, Lharbi;
- Castagner, Bastien;
- Alexander, Trevor W.;
- Abbott, D. Wade
Publication type:
Article
The Gram-positive bacterium Romboutsia ilealis harbors a polysaccharide synthase that can produce (1,3;1,4)-β-d-glucans.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40214-z
By:
- Chang, Shu-Chieh;
- Kao, Mu-Rong;
- Saldivar, Rebecka Karmakar;
- Díaz-Moreno, Sara M.;
- Xing, Xiaohui;
- Furlanetto, Valentina;
- Yayo, Johannes;
- Divne, Christina;
- Vilaplana, Francisco;
- Abbott, D. Wade;
- Hsieh, Yves S. Y.
Publication type:
Article
Histone variant H2ABbd confers lower stability to the nucleosome.
Published in:
EMBO Reports, 2004, v. 5, n. 7, p. 715, doi. 10.1038/sj.embor.7400182
By:
- Gautier, Thierry;
- Abbott, D. Wade;
- Molla, Annie;
- Verdel, Andre;
- Ausio, Juan;
- Dimitrov, Stefan
Publication type:
Article
The molecular basis of glycogen breakdown and transport in Streptococcus pneumoniae.
Published in:
Molecular Microbiology, 2010, v. 77, n. 1, p. 183, doi. 10.1111/j.1365-2958.2010.07199.x
By:
- Abbott, D. Wade;
- Higgins, Melanie A.;
- Hyrnuik, Susanne;
- Pluvinage, Benjamin;
- Van Bueren, Alicia Lammerts;
- Boraston, Alisdair B.
Publication type:
Article
Host responses to Clostridium perfringens challenge in a chicken model of chronic stress.
Published in:
Gut Pathogens, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13099-020-00362-9
By:
- Zaytsoff, Sarah J. M.;
- Lyons, Sarah M.;
- Garner, Alexander M.;
- Uwiera, Richard R. E.;
- Zandberg, Wesley F.;
- Abbott, D. Wade;
- Inglis, G. Douglas
Publication type:
Article
A haploid affair: core histone transitions during spermatogenesis.
Published in:
Biochemistry & Cell Biology, 2003, v. 81, n. 3, p. 131, doi. 10.1139/o03-045
By:
- Lewis, John D.;
- Abbott, D. Wade;
- Ausio, Juan
Publication type:
Article
Histone variants and histone modifications: A structural perspective.
Published in:
Biochemistry & Cell Biology, 2001, v. 79, n. 6, p. 693, doi. 10.1139/o01-147
By:
- Ausió, Juan;
- Abbott, D Wade;
- Wang, Xiaoying;
- Moore, Susan C
Publication type:
Article
Structural, Biochemical, and Phylogenetic Analysis of Bacterial and Fungal Carbohydrate Esterase Family 15 Glucuronoyl Esterases in the Rumen.
Published in:
Protein Journal, 2024, v. 43, n. 4, p. 910, doi. 10.1007/s10930-024-10221-0
By:
- Gruninger, Robert J.;
- Kevorkova, Maya;
- Low, Kristin E.;
- Jones, Darryl R.;
- Worrall, Liam;
- McAllister, Tim A.;
- Abbott, D. Wade
Publication type:
Article
Insight into Ligand Diversity and Novel Biological Roles for Family 32 Carbohydrate-Binding Modules.
Published in:
Molecular Biology & Evolution, 2008, v. 25, n. 1, p. 155
By:
- Abbott, D. Wade;
- Eirín-López, José María;
- Boraston, Alisdair B.
Publication type:
Article
Approaches to Investigate Selective Dietary Polysaccharide Utilization by Human Gut Microbiota at a Functional Level.
Published in:
Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.632684
By:
- Klassen, Leeann;
- Xing, Xiaohui;
- Tingley, Jeffrey P.;
- Low, Kristin E.;
- King, Marissa L.;
- Reintjes, Greta;
- Abbott, D. Wade
Publication type:
Article
Impacts of resistant starch and wheat bran consumption on enteric inflammation in relation to colonic bacterial community structures and short-chain fatty acid concentrations in mice.
Published in:
Gut Pathogens, 2016, v. 8, p. 1, doi. 10.1186/s13099-016-0149-6
By:
- Jiminez, Janelle A.;
- Uwiera, Trina C.;
- Abbott, D. Wade;
- Uwiera, Richard R. E.;
- Inglis, G. Douglas
Publication type:
Article
Glycoside hydrolase from the GH76 family indicates that marine Salegentibacter sp. Hel6 consumes alpha-mannan from fungi.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2022, v. 16, n. 7, p. 1818, doi. 10.1038/s41396-022-01223-w
By:
- Solanki, Vipul;
- Krüger, Karen;
- Crawford, Conor J.;
- Pardo-Vargas, Alonso;
- Danglad-Flores, José;
- Hoang, Kim Le Mai;
- Klassen, Leeann;
- Abbott, D. Wade;
- Seeberger, Peter H.;
- Amann, Rudolf I.;
- Teeling, Hanno;
- Hehemann, Jan-Hendrik
Publication type:
Article
Single cell fluorescence imaging of glycan uptake by intestinal bacteria.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2019, v. 13, n. 7, p. 1883, doi. 10.1038/s41396-019-0406-z
By:
- Hehemann, Jan-Hendrik;
- Reintjes, Greta;
- Klassen, Leeann;
- Smith, Adam D.;
- Ndeh, Didier;
- Arnosti, Carol;
- Amann, Rudolf;
- Abbott, D. Wade
Publication type:
Article
Development of a Real-Time Pectic Oligosaccharide-Detecting Biosensor Using the Rapid and Flexible Computational Identification of Non-Disruptive Conjugation Sites (CINC) Biosensor Design Platform.
Published in:
Sensors (14248220), 2022, v. 22, n. 3, p. 948, doi. 10.3390/s22030948
By:
- Smith, Dustin D.;
- King, Joshua P.;
- Abbott, D. Wade;
- Wieden, Hans-Joachim
Publication type:
Article
H2A.Bbd: an X-chromosome-encoded histone involved in mammalian spermiogenesis.
Published in:
Nucleic Acids Research, 2010, v. 38, n. 6, p. 1780, doi. 10.1093/nar/gkp1129
By:
- Ishibashi, Toyotaka;
- Li, Andra;
- Eirín-López, José M.;
- Zhao, Ming;
- Missiaen, Kristal;
- Abbott, D. Wade;
- Meistrich, Marvin;
- Hendzel, Michael J.;
- Ausió, Juan
Publication type:
Article
Removal of the cecum affects intestinal fermentation, enteric bacterial community structure, and acute colitis in mice.
Published in:
Gut Microbes, 2018, v. 9, n. 3, p. 218, doi. 10.1080/19490976.2017.1408763
By:
- Brown, Kirsty;
- Abbott, D. Wade;
- Uwiera, Richard R. E.;
- Inglis, G. Douglas
Publication type:
Article
Coevolution of yeast mannan digestion: Convergence of the civilized human diet, distal gut microbiome, and host immunity.
Published in:
Gut Microbes, 2015, v. 6, n. 5, p. 334, doi. 10.1080/19490976.2015.1091913
By:
- Abbott, D Wade;
- Martens, Eric C;
- Gilbert, Harry J;
- Cuskin, Fiona;
- Lowe, Elisabeth C
Publication type:
Article
Comparative Variation within the Genome of <i>Campylobacter jejuni</i> NCTC 11168 in Human and Murine Hosts.
Published in:
PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0088229
By:
- Thomas, Dallas K.;
- Lone, Abdul G.;
- Selinger, L. Brent;
- Taboada, Eduardo N.;
- Uwiera, Richard R. E.;
- Abbott, D. Wade;
- Inglis, G. Douglas
Publication type:
Article
The pangenome of the wheat pathogen Pyrenophora tritici-repentis reveals novel transposons associated with necrotrophic effectors ToxA and ToxB.
Published in:
BMC Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12915-022-01433-w
By:
- Gourlie, Ryan;
- McDonald, Megan;
- Hafez, Mohamed;
- Ortega-Polo, Rodrigo;
- Low, Kristin E.;
- Abbott, D. Wade;
- Strelkov, Stephen E.;
- Daayf, Fouad;
- Aboukhaddour, Reem
Publication type:
Article