Works by Abbott, D. Wade

Results: 47

Comparative analysis of the soil microbiome and carbohydrate content of Anthoxanthum nitens (Sweetgrass) and other Poaceae grass tissues and associated soils.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2024.1384204

By:

King, Marissa L.;
Bajwa, Barinder;
Hanna, Naomi;
Xing, Xiaohui;
Low, Kristin E.;
Neuberger, Patrick;
Hall, Erin;
Veltri, Michael;
Weighill, Brett;
Klassen, Leeann;
Plain Eagle, Noreen;
Big Bull, William;
Lynes, Laura S.;
Montina, Tony;
Thomas, Philippe J.;
Gorzelak, Monika A.;
Abbott, D. Wade

Publication type:

Article

Recognition and Degradation of Plant Cell Wall Polysaccharides by Two Human Gut Symbionts.

Published in:

PLoS Biology, 2011, v. 9, n. 12, p. 1, doi. 10.1371/journal.pbio.1001221

By:

Martens, Eric C.;
Lowe, Elisabeth C.;
Chiang, Herbert;
Pudlo, Nicholas A.;
Meng Wu;
McNulty, Nathan P.;
Abbott, D. Wade;
Henrissat, Bernard;
Gilbert, Harry J.;
Bolam, David N.;
Gordon, Jeffrey I.

Publication type:

Article

Development of a spore-based mucosal vaccine against the bovine respiratory pathogen Mannheimia haemolytica.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-29732-4

By:

Uddin, Muhammed Salah;
Guluarte, Jose Ortiz;
Abbott, D. Wade;
Inglis, G. Douglas;
Guan, Le Luo;
Alexander, Trevor W.

Publication type:

Article

Development of a spore-based mucosal vaccine against the bovine respiratory pathogen Mannheimia haemolytica.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-29732-4

By:

Uddin, Muhammed Salah;
Guluarte, Jose Ortiz;
Abbott, D. Wade;
Inglis, G. Douglas;
Guan, Le Luo;
Alexander, Trevor W.

Publication type:

Article

H2A.Bbd: an X-chromosome-encoded histone involved in mammalian spermiogenesis.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 6, p. 1780, doi. 10.1093/nar/gkp1129

By:

Ishibashi, Toyotaka;
Li, Andra;
Eirín-López, José M.;
Zhao, Ming;
Missiaen, Kristal;
Abbott, D. Wade;
Meistrich, Marvin;
Hendzel, Michael J.;
Ausió, Juan

Publication type:

Article

The Gram-positive bacterium Romboutsia ilealis harbors a polysaccharide synthase that can produce (1,3;1,4)-β-d-glucans.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40214-z

By:

Chang, Shu-Chieh;
Kao, Mu-Rong;
Saldivar, Rebecka Karmakar;
Díaz-Moreno, Sara M.;
Xing, Xiaohui;
Furlanetto, Valentina;
Yayo, Johannes;
Divne, Christina;
Vilaplana, Francisco;
Abbott, D. Wade;
Hsieh, Yves S. Y.

Publication type:

Article

The nasopharyngeal microbiota of beef cattle before and after transport to a feedlot.

Published in:

BMC Microbiology, 2017, v. 17, p. 1, doi. 10.1186/s12866-017-0978-6

By:

Holman, Devin B.;
Timsit, Edouard;
Amat, Samat;
Wade Abbott, D.;
Buret, Andre G.;
Alexander, Trevor W.

Publication type:

Article

The pangenome of the wheat pathogen Pyrenophora tritici-repentis reveals novel transposons associated with necrotrophic effectors ToxA and ToxB.

Published in:

BMC Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12915-022-01433-w

By:

Gourlie, Ryan;
McDonald, Megan;
Hafez, Mohamed;
Ortega-Polo, Rodrigo;
Low, Kristin E.;
Abbott, D. Wade;
Strelkov, Stephen E.;
Daayf, Fouad;
Aboukhaddour, Reem

Publication type:

Article

Molecular basis of an agarose metabolic pathway acquired by a human intestinal symbiont.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03366-x

By:

Pluvinage, Benjamin;
Grondin, Julie M.;
Amundsen, Carolyn;
Klassen, Leeann;
Moote, Paul E.;
Yao Xiao;
Thomas, Dallas;
Pudlo, Nicholas A.;
Anele, Anuoluwapo;
Martens, Eric C.;
Inglis, G. Douglas;
Uwiera, Richard E. R.;
Boraston, Alisdair B.;
Abbott, D. Wade

Publication type:

Article

Erratum to: Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes.

Published in:

Genome Biology & Evolution, 2021, v. 13, n. 6, p. 1, doi. 10.1093/gbe/evab129

By:

Tagirdzhanova, Gulnara;
Saary, Paul;
Tingley, Jeffrey P;
Díaz-Escandón, David;
Abbott, D Wade;
Finn, Robert D;
Spribille, Toby

Publication type:

Article

Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes.

Published in:

Genome Biology & Evolution, 2021, v. 13, n. 4, p. 1, doi. 10.1093/gbe/evab047

By:

Tagirdzhanova, Gulnara;
Saary, Paul;
Tingley, Jeffrey P;
Díaz-Escandón, David;
Abbott, D Wade;
Finn, Robert D;
Spribille, Toby

Publication type:

Article

Histone variant H2ABbd confers lower stability to the nucleosome.

Published in:

EMBO Reports, 2004, v. 5, n. 7, p. 715, doi. 10.1038/sj.embor.7400182

By:

Gautier, Thierry;
Abbott, D. Wade;
Molla, Annie;
Verdel, Andre;
Ausio, Juan;
Dimitrov, Stefan

Publication type:

Article

Comparative analysis of macroalgae supplementation on the rumen microbial community: Asparagopsis taxiformis inhibits major ruminal methanogenic, fibrolytic, and volatile fatty acid-producing microbes in vitro.

Published in:

Frontiers in Microbiology, 2023, v. 14, p. 1, doi. 10.3389/fmicb.2023.1104667

By:

O'Hara, Eóin;
Terry, Stephanie A.;
Moote, Paul;
Beauchemin, Karen A.;
McAllister, Tim A.;
Abbott, D. Wade;
Gruninger, Robert J.

Publication type:

Article

Fluorescence activated cell sorting and fermentation analysis to study rumen microbiome responses to administered live microbials and yeast cell wall derived prebiotics.

Published in:

Frontiers in Microbiology, 2023, v. 14, p. 1, doi. 10.3389/fmicb.2022.1020250

By:

Klassen, Leeann;
Reintjes, Greta;
Meiying Li;
Long Jin;
Amundsen, Carolyn;
Xiaohui Xing;
Dridi, Lharbi;
Castagner, Bastien;
Alexander, Trevor W.;
Abbott, D. Wade

Publication type:

Article

A haploid affair: core histone transitions during spermatogenesis.

Published in:

Biochemistry & Cell Biology, 2003, v. 81, n. 3, p. 131, doi. 10.1139/o03-045

By:

Lewis, John D.;
Abbott, D. Wade;
Ausio, Juan

Publication type:

Article

Histone variants and histone modifications: A structural perspective.

Published in:

Biochemistry & Cell Biology, 2001, v. 79, n. 6, p. 693, doi. 10.1139/o01-147

By:

Ausió, Juan;
Abbott, D Wade;
Wang, Xiaoying;
Moore, Susan C

Publication type:

Article

Application of culturomics to characterize diverse anaerobic bacteria from the gastrointestinal tract of broiler chickens in relation to environmental reservoirs.

Published in:

Canadian Journal of Microbiology, 2020, v. 66, n. 4, p. 288, doi. 10.1139/cjm-2019-0469

By:

Moote, Paul E.;
Zaytsoff, Sarah J.M.;
Ortega Polo, Rodrigo;
Abbott, D. Wade;
Uwiera, Richard R.E.;
Inglis, G. Douglas

Publication type:

Article

In vitro and ex vivo metabolism of chemically diverse fructans by bovine rumen Bifidobacterium and Lactobacillus species.

Published in:

Animal Microbiome, 2024, v. 6, n. 1, p. 1, doi. 10.1186/s42523-024-00328-1

By:

King, Marissa L.;
Xing, Xiaohui;
Reintjes, Greta;
Klassen, Leeann;
Low, Kristin E.;
Alexander, Trevor W.;
Waldner, Matthew;
Patel, Trushar R.;
Wade Abbott, D.

Publication type:

Article

The molecular basis of glycogen breakdown and transport in Streptococcus pneumoniae.

Published in:

Molecular Microbiology, 2010, v. 77, n. 1, p. 183, doi. 10.1111/j.1365-2958.2010.07199.x

By:

Abbott, D. Wade;
Higgins, Melanie A.;
Hyrnuik, Susanne;
Pluvinage, Benjamin;
Van Bueren, Alicia Lammerts;
Boraston, Alisdair B.

Publication type:

Article

Host responses to Clostridium perfringens challenge in a chicken model of chronic stress.

Published in:

Gut Pathogens, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13099-020-00362-9

By:

Zaytsoff, Sarah J. M.;
Lyons, Sarah M.;
Garner, Alexander M.;
Uwiera, Richard R. E.;
Zandberg, Wesley F.;
Abbott, D. Wade;
Inglis, G. Douglas

Publication type:

Article

Impacts of resistant starch and wheat bran consumption on enteric inflammation in relation to colonic bacterial community structures and short-chain fatty acid concentrations in mice.

Published in:

Gut Pathogens, 2016, v. 8, p. 1, doi. 10.1186/s13099-016-0149-6

By:

Jiminez, Janelle A.;
Uwiera, Trina C.;
Abbott, D. Wade;
Uwiera, Richard R. E.;
Inglis, G. Douglas

Publication type:

Article

Contributions of a unique β-clamp to substrate recognition illuminates the molecular basis of exolysis in ferulic acid esterases.

Published in:

Biochemical Journal, 2016, v. 473, n. 7, p. 839, doi. 10.1042/BJ20151153

By:

Gruninger, Robert J.;
Cote, Chris;
McAllister, Tim A.;
Wade Abbott, D.

Publication type:

Article

Corticosterone-mediated physiological stress modulates hepatic lipid metabolism, metabolite profiles, and systemic responses in chickens.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-52267-6

By:

Zaytsoff, Sarah J. M.;
Brown, Catherine L. J.;
Montina, Tony;
Metz, Gerlinde A. S.;
Abbott, D. Wade;
Uwiera, Richard R. E.;
Inglis, G. Douglas

Publication type:

Article

Engineering dual-glycan responsive expression systems for tunable production of heterologous proteins in Bacteroides thetaiotaomicron.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-53726-w

By:

Jones, Darryl R.;
Smith, Marshall B.;
McLean, Richard;
Grondin, Julie M.;
Amundsen, Carolyn R.;
Inglis, G. Douglas;
Selinger, Brent;
Abbott, D. Wade

Publication type:

Article

Evaluation of Rumen Fermentation and Microbial Adaptation to Three Red Seaweeds Using the Rumen Simulation Technique.

Published in:

Animals (2076-2615), 2023, v. 13, n. 10, p. 1643, doi. 10.3390/ani13101643

By:

Terry, Stephanie A.;
Krüger, Ana M.;
Lima, Paulo M. T.;
Gruninger, Robert J.;
Abbott, D. Wade;
Beauchemin, Karen A.

Publication type:

Article

Expeller-Pressed Canola (Brassica napus) Meal Modulates the Structure and Function of the Cecal Microbiota, and Alters the Metabolome of the Pancreas, Liver, and Breast Muscle of Broiler Chickens.

Published in:

Animals (2076-2615), 2021, v. 11, n. 2, p. 577, doi. 10.3390/ani11020577

By:

Inglis, G. Douglas;
Wright, Benjamin D.;
Sheppard, Stephanie A.;
Abbott, D. Wade;
Oryschak, Matt A.;
Montina, Tony;
Gonzalez, John Michael;
Owens, Casey M.

Publication type:

Article

Seaweed and Seaweed Bioactives for Mitigation of Enteric Methane: Challenges and Opportunities.

Published in:

Animals (2076-2615), 2020, v. 10, n. 12, p. 2432, doi. 10.3390/ani10122432

By:

Abbott, D. Wade;
Aasen, Inga Marie;
Beauchemin, Karen A.;
Grondahl, Fredrik;
Gruninger, Robert;
Hayes, Maria;
Huws, Sharon;
Kenny, David A.;
Krizsan, Sophie J.;
Kirwan, Stuart F.;
Lind, Vibeke;
Meyer, Ulrich;
Ramin, Mohammad;
Theodoridou, Katerina;
von Soosten, Dirk;
Walsh, Pamela J.;
Waters, Sinéad;
Xing, Xiaohui

Publication type:

Article

Removal of the cecum affects intestinal fermentation, enteric bacterial community structure, and acute colitis in mice.

Published in:

Gut Microbes, 2018, v. 9, n. 3, p. 218, doi. 10.1080/19490976.2017.1408763

By:

Brown, Kirsty;
Abbott, D. Wade;
Uwiera, Richard R. E.;
Inglis, G. Douglas

Publication type:

Article

Coevolution of yeast mannan digestion: Convergence of the civilized human diet, distal gut microbiome, and host immunity.

Published in:

Gut Microbes, 2015, v. 6, n. 5, p. 334, doi. 10.1080/19490976.2015.1091913

By:

Abbott, D Wade;
Martens, Eric C;
Gilbert, Harry J;
Cuskin, Fiona;
Lowe, Elisabeth C

Publication type:

Article

Correction to: Combined whole cell wall analysis and streamlined in silico carbohydrate‑active enzyme discovery to improve biocatalytic conversion of agricultural crop residues.

Published in:

2021

By:

Tingley, Jeffrey P.;
Low, Kristin E.;
Xing, Xiaohui;
Abbott, D. Wade

Publication type:

Correction Notice

Combined whole cell wall analysis and streamlined in silico carbohydrate-active enzyme discovery to improve biocatalytic conversion of agricultural crop residues.

Published in:

Biotechnology for Biofuels, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13068-020-01869-8

By:

Tingley, Jeffrey P.;
Low, Kristin E.;
Xing, Xiaohui;
Abbott, D. Wade

Publication type:

Article

Correction to: Combined whole cell wall analysis and streamlined in silico carbohydrate‑active enzyme discovery to improve biocatalytic conversion of agricultural crop residues.

Published in:

2021

By:

Tingley, Jeffrey P.;
Low, Kristin E.;
Xing, Xiaohui;
Abbott, D. Wade

Publication type:

Correction Notice

Combined whole cell wall analysis and streamlined in silico carbohydrate-active enzyme discovery to improve biocatalytic conversion of agricultural crop residues.

Published in:

Biotechnology for Biofuels, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13068-020-01869-8

By:

Tingley, Jeffrey P.;
Low, Kristin E.;
Xing, Xiaohui;
Abbott, D. Wade

Publication type:

Article

Characterization of Unfractionated Polysaccharides in Brown Seaweed by Methylation-GC-MS-Based Linkage Analysis.

Published in:

Marine Drugs, 2024, v. 22, n. 10, p. 464, doi. 10.3390/md22100464

By:

Bajwa, Barinder;
Xing, Xiaohui;
Serin, Spencer C.;
Hayes, Maria;
Terry, Stephanie A.;
Gruninger, Robert J.;
Abbott, D. Wade

Publication type:

Article

Methylation-GC-MS/FID-Based Glycosidic Linkage Analysis of Unfractionated Polysaccharides in Red Seaweeds.

Published in:

Marine Drugs, 2024, v. 22, n. 5, p. 192, doi. 10.3390/md22050192

By:

Bajwa, Barinder;
Xing, Xiaohui;
Terry, Stephanie A.;
Gruninger, Robert J.;
Abbott, D. Wade

Publication type:

Article

Insight into Ligand Diversity and Novel Biological Roles for Family 32 Carbohydrate-Binding Modules.

Published in:

Molecular Biology & Evolution, 2008, v. 25, n. 1, p. 155

By:

Abbott, D. Wade;
Eirín-López, José María;
Boraston, Alisdair B.

Publication type:

Article

Development of a Real-Time Pectic Oligosaccharide-Detecting Biosensor Using the Rapid and Flexible Computational Identification of Non-Disruptive Conjugation Sites (CINC) Biosensor Design Platform.

Published in:

Sensors (14248220), 2022, v. 22, n. 3, p. 948, doi. 10.3390/s22030948

By:

Smith, Dustin D.;
King, Joshua P.;
Abbott, D. Wade;
Wieden, Hans-Joachim

Publication type:

Article

Combinatorial Glycomic Analyses to Direct CAZyme Discovery for the Tailored Degradation of Canola Meal Non-Starch Dietary Polysaccharides.

Published in:

Microorganisms, 2020, v. 8, n. 12, p. 1888, doi. 10.3390/microorganisms8121888

By:

Low, Kristin E.;
Xing, Xiaohui;
Moote, Paul E.;
Inglis, G. Douglas;
Venketachalam, Sivasankari;
Hahn, Michael G.;
King, Marissa L.;
Tétard-Jones, Catherine Y.;
Jones, Darryl R.;
Willats, William G. T.;
Slominski, Bogdan A.;
Abbott, D. Wade

Publication type:

Article

Comparative Variation within the Genome of <i>Campylobacter jejuni</i> NCTC 11168 in Human and Murine Hosts.

Published in:

PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0088229

By:

Thomas, Dallas K.;
Lone, Abdul G.;
Selinger, L. Brent;
Taboada, Eduardo N.;
Uwiera, Richard R. E.;
Abbott, D. Wade;
Inglis, G. Douglas

Publication type:

Article

An Ancestral Member of the Polysaccharide Lyase Family 2 Displays Endolytic Activity and Magnesium Dependence.

Published in:

Applied Biochemistry & Biotechnology, 2013, v. 171, n. 7, p. 1911, doi. 10.1007/s12010-013-0483-9

By:

Abbott, D. Wade;
Thomas, Dallas;
Pluvinage, Benjamin;
Boraston, Alisdair B.

Publication type:

Article

Effect of ammonia fiber expansion-treated wheat straw and a recombinant fibrolytic enzyme on rumen microbiota and fermentation parameters, total tract digestibility, and performance of lambs.

Published in:

Journal of Animal Science, 2020, v. 98, n. 5, p. N.PAG, doi. 10.1093/jas/skaa116

By:

Ribeiro, Gabriel O;
Gruninger, Robert J;
Jones, Darryl R;
Beauchemin, Karen A;
Yang, Wen Zhu;
Wang, Yuxi;
Abbott, D Wade;
Tsang, Adrian;
McAllister, Tim A

Publication type:

Article

Approaches to Investigate Selective Dietary Polysaccharide Utilization by Human Gut Microbiota at a Functional Level.

Published in:

Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.632684

By:

Klassen, Leeann;
Xing, Xiaohui;
Tingley, Jeffrey P.;
Low, Kristin E.;
King, Marissa L.;
Reintjes, Greta;
Abbott, D. Wade

Publication type:

Article

SACCHARIS: an automated pipeline to streamline discovery of carbohydrate active enzyme activities within polyspecific families and de novo sequence datasets.

Published in:

Biotechnology for Biofuels, 2018, v. 11, n. 1, p. 1, doi. 10.1186/s13068-018-1027-x

By:

Jones, Darryl R.;
Thomas, Dallas;
Alger, Nicholas;
Ghavidel, Ata;
Inglis, G. Douglas;
Abbott, D. Wade

Publication type:

Article

Structural, Biochemical, and Phylogenetic Analysis of Bacterial and Fungal Carbohydrate Esterase Family 15 Glucuronoyl Esterases in the Rumen.

Published in:

Protein Journal, 2024, v. 43, n. 4, p. 910, doi. 10.1007/s10930-024-10221-0

By:

Gruninger, Robert J.;
Kevorkova, Maya;
Low, Kristin E.;
Jones, Darryl R.;
Worrall, Liam;
McAllister, Tim A.;
Abbott, D. Wade

Publication type:

Article

The glycoconjugate-degrading enzymes of Clostridium perfringens: Tailored catalysts for breaching the intestinal mucus barrier.

Published in:

Glycobiology, 2021, v. 31, n. 6, p. 681, doi. 10.1093/glycob/cwaa050

By:

Low, Kristin E;
Smith, Steven P;
Abbott, D Wade;
Boraston, Alisdair B

Publication type:

Article

Glycoside hydrolase from the GH76 family indicates that marine Salegentibacter sp. Hel6 consumes alpha-mannan from fungi.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2022, v. 16, n. 7, p. 1818, doi. 10.1038/s41396-022-01223-w

By:

Solanki, Vipul;
Krüger, Karen;
Crawford, Conor J.;
Pardo-Vargas, Alonso;
Danglad-Flores, José;
Hoang, Kim Le Mai;
Klassen, Leeann;
Abbott, D. Wade;
Seeberger, Peter H.;
Amann, Rudolf I.;
Teeling, Hanno;
Hehemann, Jan-Hendrik

Publication type:

Article

Single cell fluorescence imaging of glycan uptake by intestinal bacteria.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2019, v. 13, n. 7, p. 1883, doi. 10.1038/s41396-019-0406-z

By:

Hehemann, Jan-Hendrik;
Reintjes, Greta;
Klassen, Leeann;
Smith, Adam D.;
Ndeh, Didier;
Arnosti, Carol;
Amann, Rudolf;
Abbott, D. Wade

Publication type:

Article