Works by Aanensen, David

Results: 58

Genomic surveillance of Salmonella spp. in the Philippines during 2013–2014.
Published in:
Transactions of the Royal Society of Tropical Medicine & Hygiene, 2022, v. 116, n. 12, p. 1202, doi. 10.1093/trstmh/trac080
By:
- Lagrada, Marietta L;
- Argimón, Silvia;
- Borlasa, Janice B;
- Abad, Jaywardeen P;
- Gayeta, June M;
- Masim, Melissa L;
- Olorosa, Agnettah M;
- Cohen, Victoria;
- Jeffrey, Benjamin;
- Abudahab, Khalil;
- Sia, Sonia B;
- Hufano, Charmian M;
- Stelling, John;
- Holden, Matthew T G;
- Aanensen, David M;
- Carlos, Celia C
Publication type:
Article
Consensus multi-locus sequence typing scheme for Cryptococcus neoformans and Cryptococcus gattii.
Published in:
Medical Mycology, 2009, v. 47, n. 6, p. 561, doi. 10.1080/13693780902953886
By:
- Meyer, Wieland;
- Aanensen, David M.;
- Boekhout, Teun;
- Cogliati, Massimo;
- Diaz, Mara R.;
- Esposto, Maria Carmela;
- Fisher, Matthew;
- Gilgado, Felix;
- Hagen, Ferry;
- Kaocharoen, Sirada;
- Litvintseva, Anastasia P.;
- Mitchell, Thomas G.;
- Simwami, Sitali P.;
- Trilles, Luciana;
- Viviani, Maria Anna;
- Kwon-Chung, June
Publication type:
Article
Novel Subclone of Carbapenem-Resistant Klebsiella pneumoniae Sequence Type 11 with Enhanced Virulence and Transmissibility, China.
Published in:
2020
By:
- Kai Zhou;
- Tingting Xiao;
- David, Sophia;
- Qin Wang;
- Yanzi Zhou;
- Lihua Guo;
- Aanensen, David;
- Holt, Kathryn E.;
- Thomson, Nicholas R.;
- Grundmann, Hajo;
- Ping Shen;
- Yonghong Xiao;
- Zhou, Kai;
- Xiao, Tingting;
- Wang, Qin;
- Zhou, Yanzi;
- Guo, Lihua;
- Shen, Ping;
- Xiao, Yonghong
Publication type:
journal article
Melioidosis Caused by Burkholderia pseudomallei in Drinking Water, Thailand, 2012.
Published in:
Emerging Infectious Diseases, 2014, v. 20, n. 2, p. 265, doi. 10.3201/eid2002.121891
By:
- Limmathurotsakul, Direk;
- Wongsuvan, Gumphol;
- Aanensen, David;
- Ngamwilai, Sujittra;
- Saiprom, Natnaree;
- Rongkard, Patpong;
- Thaipadungpanit, Janjira;
- Kanoksil, Manas;
- Chantratits, Narisara;
- Day, Nicholas P. J.;
- Peacock, Sharon J.
Publication type:
Article
Genomic characterization of invasive typhoidal and non-typhoidal Salmonella in southwestern Nigeria.
Published in:
PLoS Neglected Tropical Diseases, 2022, v. 16, n. 8, p. 1, doi. 10.1371/journal.pntd.0010716
By:
- Ikhimiukor, Odion O.;
- Oaikhena, Anderson O.;
- Afolayan, Ayorinde O.;
- Fadeyi, Abayomi;
- Kehinde, Aderemi;
- Ogunleye, Veronica O.;
- Aboderin, Aaron O.;
- Oduyebo, Oyinlola O.;
- Elikwu, Charles J.;
- Odih, Erkison Ewomazino;
- Komolafe, Ifeoluwa;
- Argimón, Silvia;
- Egwuenu, Abiodun;
- Adebiyi, Ini;
- Sadare, Oluwadamilola A.;
- Okwor, Tochi;
- Kekre, Mihir;
- Underwood, Anthony;
- Ihekweazu, Chikwe;
- Aanensen, David M.
Publication type:
Article
Low Diversity Cryptococcus neoformans Variety grubii Multilocus Sequence Types from Thailand Are Consistent with an Ancestral African Origin.
Published in:
PLoS Pathogens, 2011, v. 7, n. 4, p. 1, doi. 10.1371/journal.ppat.1001343
By:
- Simwami, Sitali P.;
- Khayhan, Kantarawee;
- Henk, Daniel A.;
- Aanensen, David M.;
- Boekhout, Teun;
- Hagen, Ferry;
- Brouwer, Annemarie E.;
- Harrison, Thomas S.;
- Donnelly, Christl A.;
- Fisher, Matthew C.
Publication type:
Article
Genomic Evidence for the Evolution of Streptococcus equi: Host Restriction, Increased Virulence, and Genetic Exchange with Human Pathogens.
Published in:
PLoS Pathogens, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.ppat.1000346
By:
- Holden, Matthew T. G.;
- Heather, Zoe;
- Paillot, Romain;
- Steward, Karen F.;
- Webb, Katy;
- Ainslie, Fern;
- Jourdan, Thibaud;
- Bason, Nathalie C.;
- Holroyd, Nancy E.;
- Mungall, Karen;
- Quail, Michael A.;
- Sanders, Mandy;
- Simmonds, Mark;
- Willey, David;
- Brooks, Karen;
- Aanensen, David M.;
- Spratt, Brian G.;
- Jolley, Keith A.;
- Maiden, Martin C. J.;
- Kehoe, Michael
Publication type:
Article
Phandango: an interactive viewer for bacterial population genomics.
Published in:
Bioinformatics, 2018, v. 34, n. 2, p. 292, doi. 10.1093/bioinformatics/btx610
By:
- Hadfield, James;
- Croucher, Nicholas J;
- Goater, Richard J;
- Abudahab, Khalil;
- Aanensen, David M;
- Harris, Simon R
Publication type:
Article
Unlocking the Potential of Genomic Data to Inform Typhoid Fever Control Policy: Supportive Resources for Genomic Data Generation, Analysis, and Visualization.
Published in:
Open Forum Infectious Diseases, 2023, v. 10, p. S38, doi. 10.1093/ofid/ofad044
By:
- Carey, Megan E;
- Dyson, Zoe A;
- Argimón, Silvia;
- Cerdeira, Louise;
- Yeats, Corin;
- Aanensen, David;
- Mboowa, Gerald;
- Baker, Stephen;
- Tessema, Sofonias K;
- Smith, Anthony M;
- Okeke, Iruka N;
- Holt, Kathryn E
Publication type:
Article
COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-14016-0
By:
- Kläser, Kerstin;
- Molteni, Erika;
- Graham, Mark;
- Canas, Liane S.;
- Österdahl, Marc F.;
- Antonelli, Michela;
- Chen, Liyuan;
- Deng, Jie;
- Murray, Benjamin;
- Kerfoot, Eric;
- Wolf, Jonathan;
- May, Anna;
- Fox, Ben;
- Capdevila, Joan;
- The COVID-19 Genomics U. K. (COG-UK) Consortium;
- Aanensen, David M.;
- Abudahab, Khalil;
- Adams, Helen;
- Adams, Alexander;
- Afifi, Safiah
Publication type:
Article
The Promise of Whole Genome Pathogen Sequencing for the Molecular Epidemiology of Emerging Aquaculture Pathogens.
Published in:
Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00121
By:
- Bayliss, Sion C.;
- Verner-Jeffreys, David W.;
- Bartie, Kerry L.;
- Aanensen, David M.;
- Sheppard, Samuel K.;
- Adams, Alexandra;
- Feil, Edward J.
Publication type:
Article
Comparison of Two Multilocus Sequence Based Genotyping Schemes for Leptospira Species.
Published in:
PLoS Neglected Tropical Diseases, 2011, v. 5, n. 11, p. 1, doi. 10.1371/journal.pntd.0001374
By:
- Ahmed, Ahmed;
- Thaipadungpanit, Janjira;
- Boonsilp, Siriphan;
- Wuthiekanun, Vanaporn;
- Nalam, Kishore;
- Spratt, Brian G.;
- Aanensen, David M.;
- Smythe, Lee D.;
- Ahmed, Niyaz;
- Feil, Edward J.;
- Hartskeerl, Rudy A.;
- Peacock, Sharon J.
Publication type:
Article
Comparison of Two Multilocus Sequence Based Genotyping Schemes for Leptospira Species.
Published in:
PLoS Neglected Tropical Diseases, 2011, v. 5, n. 11, p. 1, doi. 10.1371/journal.pntd.0001374
By:
- Ahmed, Ahmed;
- Thaipadungpanit, Janjira;
- Boonsilp, Siriphan;
- Wuthiekanun, Vanaporn;
- Nalam, Kishore;
- Spratt, Brian G.;
- Aanensen, David M.;
- Smythe, Lee D.;
- Ahmed, Niyaz;
- Feil, Edward J.;
- Hartskeerl, Rudy A.;
- Peacock, Sharon J.
Publication type:
Article
Genetic Analysis of the Capsular Biosynthetic<br /> Locus from All 90 Pneumococcal Serotypes.
Published in:
PLoS Genetics, 2006, v. 2, n. 3, p. e31, doi. 10.1371/journal.pgen.0020031
By:
- Bentley, Stephen D.;
- Aanensen, David M.;
- Mavroidi, Angeliki;
- Saunders, David;
- Rabbinowitsch, Ester;
- Collins, Matthew;
- Donohoe, Kathy;
- Harris, David;
- Murphy, Lee;
- Quail, Michael A.;
- Samuel, Gabby;
- Skovsted, Ian C.;
- Kaltoft, Margit Staum;
- Barrell, Bart;
- Reeves, Peter R.;
- Parkhill, Julian;
- Spratt, Brian G.
Publication type:
Article
Geographic Distribution of Staphylococcus aureus Causing Invasive Infections in Europe: A Molecular-Epidemiological Analysis.
Published in:
PLoS Medicine, 2010, v. 7, n. 1, p. 1, doi. 10.1371/journal.pmed.1000215
By:
- Grundmann, Hajo;
- Aanensen, David M.;
- van den Wijngaard, Cees C.;
- Spratt, Brian G.;
- Harmsen, Dag;
- Friedrich, Alexander W.
Publication type:
Article
Author Correction: Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris.
Published in:
Emerging Microbes & Infections, 2018, v. 7, n. 1, p. 1, doi. 10.1038/s41426-018-0098-x
By:
- Rhodes, Johanna;
- Abdolrasouli, Alireza;
- Farrer, Rhys A.;
- Cuomo, Christina A.;
- Aanensen, David M.;
- Armstrong-James, Darius;
- Fisher, Matthew C.;
- Schelenz, Silke
Publication type:
Article
Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris.
Published in:
Emerging Microbes & Infections, 2018, v. 7, n. 1, p. 1, doi. 10.1038/s41426-018-0045-x
By:
- Rhodes, Johanna;
- Abdolrasouli, Alireza;
- Farrer, Rhys A.;
- Cuomo, Christina A.;
- Aanensen, David M.;
- Armstrong-James, Darius;
- Fisher, Matthew C.;
- Schelenz, Silke
Publication type:
Article
Author Correction: Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris.
Published in:
Emerging Microbes & Infections, 2018, v. 7, n. 1, p. 1, doi. 10.1038/s41426-018-0098-x
By:
- Rhodes, Johanna;
- Abdolrasouli, Alireza;
- Farrer, Rhys A.;
- Cuomo, Christina A.;
- Aanensen, David M.;
- Armstrong-James, Darius;
- Fisher, Matthew C.;
- Schelenz, Silke
Publication type:
Article
Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris.
Published in:
Emerging Microbes & Infections, 2018, v. 7, n. 1, p. 1, doi. 10.1038/s41426-018-0045-x
By:
- Rhodes, Johanna;
- Abdolrasouli, Alireza;
- Farrer, Rhys A.;
- Cuomo, Christina A.;
- Aanensen, David M.;
- Armstrong-James, Darius;
- Fisher, Matthew C.;
- Schelenz, Silke
Publication type:
Article
Whole genome resequencing of the human parasite Schistosoma mansoni reveals population history and effects of selection.
Published in:
Scientific Reports, 2016, p. 20954, doi. 10.1038/srep20954
By:
- Crellen, Thomas;
- Allan, Fiona;
- David, Sophia;
- Durrant, Caroline;
- Huckvale, Thomas;
- Holroyd, Nancy;
- Emery, Aidan M.;
- Rollinson, David;
- Aanensen, David M.;
- Berriman, Matthew;
- Webster, Joanne P.;
- Cotton, James A.
Publication type:
Article
Host migration impacts on the phylogeography of Lyme Borreliosis spirochaete species in Europe.
Published in:
Environmental Microbiology, 2011, v. 13, n. 1, p. 184, doi. 10.1111/j.1462-2920.2010.02319.x
By:
- Vollmer, Stephanie A.;
- Bormane, Antra;
- Dinnis, Ruth E.;
- Seelig, Frederik;
- Dobson, Andrew D. M.;
- Aanensen, David M.;
- James, Marianne C.;
- Donaghy, Michael;
- Randolph, Sarah E.;
- Feil, Edward J.;
- Kurtenbach, Klaus;
- Margos, Gabriele
Publication type:
Article
CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance.
Published in:
2021
By:
- Nicholls, Samuel M.;
- Poplawski, Radoslaw;
- Bull, Matthew J.;
- Underwood, Anthony;
- Chapman, Michael;
- Abu-Dahab, Khalil;
- Taylor, Ben;
- Colquhoun, Rachel M.;
- Rowe, Will P. M.;
- Jackson, Ben;
- Hill, Verity;
- O'Toole, Áine;
- Rey, Sara;
- Southgate, Joel;
- Amato, Roberto;
- Livett, Rich;
- Gonçalves, Sónia;
- Harrison, Ewan M.;
- Peacock, Sharon J.;
- Aanensen, David M.
Publication type:
Editorial
A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00858-2
By:
- Sánchez-Busó, Leonor;
- Yeats, Corin A.;
- Taylor, Benjamin;
- Goater, Richard J.;
- Underwood, Anthony;
- Abudahab, Khalil;
- Argimón, Silvia;
- Ma, Kevin C.;
- Mortimer, Tatum D.;
- Golparian, Daniel;
- Cole, Michelle J.;
- Grad, Yonatan H.;
- Martin, Irene;
- Raphael, Brian H.;
- Shafer, William M.;
- Town, Katy;
- Wi, Teodora;
- Harris, Simon R.;
- Unemo, Magnus;
- Aanensen, David M.
Publication type:
Article
A Single Multilocus Sequence Typing (MLST) Scheme for Seven Pathogenic Leptospira Species.
Published in:
PLoS Neglected Tropical Diseases, 2013, v. 7, n. 1, p. 1, doi. 10.1371/journal.pntd.0001954
By:
- Boonsilp, Siriphan;
- Thaipadungpanit, Janjira;
- Amornchai, Premjit;
- Wuthiekanun, Vanaporn;
- Bailey, Mark S.;
- Holden, Matthew T. G.;
- Zhang, Cuicai;
- Jiang, Xiugao;
- Koizumi, Nobuo;
- Taylor, Kyle;
- Galloway, Renee;
- Hoffmaster, Alex R.;
- Craig, Scott;
- Smythe, Lee D.;
- Hartskeerl, Rudy A.;
- Day, Nicholas P.;
- Chantratita, Narisara;
- Feil, Edward J.;
- Aanensen, David M.;
- Spratt, Brian G.
Publication type:
Article
A Single Multilocus Sequence Typing (MLST) Scheme for Seven Pathogenic Leptospira Species.
Published in:
PLoS Neglected Tropical Diseases, 2013, v. 7, n. 1, p. 1, doi. 10.1371/journal.pntd.0001954
By:
- Boonsilp, Siriphan;
- Thaipadungpanit, Janjira;
- Amornchai, Premjit;
- Wuthiekanun, Vanaporn;
- Bailey, Mark S.;
- Holden, Matthew T. G.;
- Cuicai Zhang;
- Xiugao Jiang;
- Koizumi, Nobuo;
- Taylor, Kyle;
- Galloway, Renee;
- Hoffmaster, Alex R.;
- Craig, Scott;
- Smythe, Lee D.;
- Hartskeerl, Rudy A.;
- Day, Nicholas P.;
- Chantratita, Narisara;
- Feil, Edward J.;
- Aanensen, David M.;
- Spratt, Brian G.
Publication type:
Article
Surveillance of strangles in UK horses between 2015 and 2019 based on laboratory detection of Streptococcus equi.
Published in:
Veterinary Record: Journal of the British Veterinary Association, 2021, v. 189, n. 12, p. 1, doi. 10.1002/vetr.948
By:
- McGlennon, Abigail;
- Waller, Andrew;
- Verheyen, Kristien;
- Slater, Josh;
- Grewar, John;
- Aanensen, David;
- Newton, Richard
Publication type:
Article
High susceptibility to zoliflodacin and conserved target (GyrB) for zoliflodacin among 1209 consecutive clinical Neisseria gonorrhoeae isolates from 25 European countries, 2018.
Published in:
2021
By:
- Unemo, Magnus;
- Ahlstrand, Josefine;
- Sánchez-Busó, Leonor;
- Day, Michaela;
- Aanensen, David;
- Golparian, Daniel;
- Jacobsson, Susanne;
- Cole, Michelle J;
- Group, the European Collaborative;
- European Collaborative Group
Publication type:
journal article
The changing epidemiology of carbapenemase-producing Klebsiella pneumoniae in Italy: toward polyclonal evolution with emergence of high-risk lineages.
Published in:
2021
By:
- Pilato, Vincenzo Di;
- Errico, Giulia;
- Monaco, Monica;
- Giani, Tommaso;
- Grosso, Maria Del;
- Antonelli, Alberto;
- David, Sophia;
- Lindh, Erika;
- Camilli, Romina;
- Aanensen, David M;
- Rossolini, Gian Maria;
- Pantosti, Annalisa;
- pneumoniae, the AR-ISS Laboratory Study Group on carbapenemase-producing Klebsiella;
- Di Pilato, Vincenzo;
- Del Grosso, Maria;
- AR-ISS Laboratory Study Group on carbapenemase-producing Klebsiella pneumoniae
Publication type:
journal article
The multilocus sequence typing network: mlst.net.
Published in:
Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w728, doi. 10.1093/nar/gki415
By:
- Aanensen, David M.;
- Spratt, Brian G.
Publication type:
Article
Genomic surveillance of Acinetobacter baumannii in the Philippines, 2013–2014.
Published in:
Western Pacific Surveillance & Response Journal, 2021, v. 12, n. 4, p. 46, doi. 10.5365/wpsar.2021.12.4.863
By:
- Chilam, Jeremiah;
- Argimón, Silvia;
- Limas, Marilyn T.;
- Masim, Melissa L.;
- Gayeta, June M.;
- Lagrada, Marietta L.;
- Olorosa, Agnettah M.;
- Cohen, Victoria;
- Hernandez, Lara T.;
- Jeffrey, Benjamin;
- Abudahab, Khalil;
- Hufano, Charmian M.;
- Sia, Sonia B.;
- Holden, Matthew T. G.;
- Stelling, John;
- Aanensen, David M.;
- Carlos, Celia C.
Publication type:
Article
Genomic surveillance of Pseudomonas aeruginosa in the Philippines, 2013-2014.
Published in:
Western Pacific Surveillance & Response Journal, 2021, v. 12, n. 2, p. 4, doi. 10.5365/wpsar.2020.11.1.006
By:
- Chilam, Jeremiah;
- Argimón, Silvia;
- Limas, Marilyn T.;
- Masim, Melissa L.;
- Gayeta, June M.;
- Lagrada, Marietta L.;
- Olorosa, Agnettah M.;
- Cohen, Victoria;
- Hernandez, Lara T.;
- Jeffrey, Benjamin;
- Abudahab, Khalil;
- Hufano, Charmian M.;
- Sia, Sonia B.;
- Holden, Matthew T. G.;
- Stelling, John;
- Aanensen, David M.;
- Carlos, Celia C.
Publication type:
Article
Genomic surveillance of Neisseria gonorrhoeae in the Philippines, 2013-2014.
Published in:
Western Pacific Surveillance & Response Journal, 2021, v. 12, n. 1, p. 17, doi. 10.5365/wpsar.2020.11.1.005
By:
- Jamoralin Jr, Manuel C.;
- Argimón, Silvia;
- Lagrada, Marietta L.;
- Villamin, Alfred S.;
- Masim, Melissa L.;
- Gayeta, June M.;
- Boehme, Karis D.;
- Olorosa, Agnettah M.;
- Sia, Sonia B.;
- Hufano, Charmian M.;
- Cohen, Victoria;
- Hernandez, Lara T.;
- Jeffrey, Benjamin;
- Abudahab, Khalil;
- Stelling, John;
- Holden, Matthew T. G.;
- Aanensen, David M.;
- Carlos, Celia C.
Publication type:
Article
Genomic surveillance of methicillin-resistant Staphylococcus aureus in the Philippines, 2013-2014.
Published in:
Western Pacific Surveillance & Response Journal, 2021, v. 12, n. 1, p. 6, doi. 10.5365/wpsar.2020.11.1.004
By:
- Masim, Melissa L.;
- Argim, Silvia;
- Espiritu, Holly O.;
- Magbanua, Mariane A.;
- Lagrada, Marietta L.;
- Olorosa, Agnettah M.;
- Cohen, Victoria;
- Gayeta, June M.;
- Jeffrey, Benjamin;
- Abudahab, Khalil;
- Hufano, Charmian M.;
- Sia, Sonia B.;
- Holden, Matthew T. G.;
- Stelling, John;
- Aanensen, David M.;
- Carlos, Celia C.
Publication type:
Article
Changing Epidemiologic Profile of Quinolone-Resistant Neisseria gonorrhoeae in London.
Published in:
Journal of Infectious Diseases, 2005, v. 192, n. 7, p. 1191, doi. 10.1086/444429
By:
- Martin, Iona M. C.;
- Ison, Catherine A.;
- Aanensen, David M.;
- Fenton, Kevin A.;
- Spratt, Brian G.
Publication type:
Article
Rapid Sequence-Based Identification of Gonococcal Transmission Clusters in a Large Metropolitan Area.
Published in:
Journal of Infectious Diseases, 2004, v. 189, n. 8, p. 1497, doi. 10.1086/383047
By:
- Martin, Iona M. C.;
- Ison, Catherine A.;
- Aanensen, David M.;
- Fenton, Kevin A.;
- Spratt, Brian G.
Publication type:
Article
Dense genomic sampling identifies highways of pneumococcal recombination.
Published in:
Nature Genetics, 2014, v. 46, n. 3, p. 305, doi. 10.1038/ng.2895
By:
- Chewapreecha, Claire;
- Harris, Simon R;
- Croucher, Nicholas J;
- Turner, Claudia;
- Marttinen, Pekka;
- Cheng, Lu;
- Pessia, Alberto;
- Aanensen, David M;
- Mather, Alison E;
- Page, Andrew J;
- Salter, Susannah J;
- Harris, David;
- Nosten, Francois;
- Goldblatt, David;
- Corander, Jukka;
- Parkhill, Julian;
- Turner, Paul;
- Bentley, Stephen D
Publication type:
Article
Widespread emergence of OmpK36 loop 3 insertions among multidrug-resistant clones of Klebsiella pneumoniae.
Published in:
PLoS Pathogens, 2022, v. 18, n. 7, p. 1, doi. 10.1371/journal.ppat.1010334
By:
- David, Sophia;
- Wong, Joshua L. C.;
- Sanchez-Garrido, Julia;
- Kwong, Hok-Sau;
- Low, Wen Wen;
- Morecchiato, Fabio;
- Giani, Tommaso;
- Rossolini, Gian Maria;
- Brett, Stephen J.;
- Clements, Abigail;
- Beis, Konstantinos;
- Aanensen, David M.;
- Frankel, Gad
Publication type:
Article
Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination.
Published in:
Molecular Biology & Evolution, 2017, v. 34, n. 10, p. 2537, doi. 10.1093/molbev/msx173
By:
- Mostowy, Rafał J.;
- Croucher, Nicholas J.;
- De Maio, Nicola;
- Chewapreecha, Claire;
- Salter, Susannah J.;
- Turner, Paul;
- Aanensen, David M.;
- Bentley, Stephen D.;
- Didelot, Xavier;
- Fraser, Christophe
Publication type:
Article
Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software.
Published in:
Molecular Biology & Evolution, 2013, v. 30, n. 5, p. 1224, doi. 10.1093/molbev/mst028
By:
- Cheng, Lu;
- Connor, Thomas R.;
- Sirén, Jukka;
- Aanensen, David M.;
- Corander, Jukka
Publication type:
Article
Capturing Data on Antimicrobial Resistance Patterns and Trends in Use in Regions of Asia (CAPTURA).
Published in:
Clinical Infectious Diseases, 2023, v. 77, p. S500, doi. 10.1093/cid/ciad567
By:
- Holm, Marianne;
- MacWright, William R;
- Poudyal, Nimesh;
- Shaw, Alina G;
- Joh, Hea Sun;
- Gallagher, Patrick F;
- Kim, Jong-Hoon;
- Shaikh, Affan T;
- Seo, Hye Jin;
- Kwon, Soo Young;
- Prifti, Kristi;
- Dolabella, Brooke;
- Taylor, Ben E W;
- Yeats, Corin;
- Aanensen, David M;
- Stelling, John;
- Marks, Florian
Publication type:
Article
Conservation of vaccine antigen sequences encoded by sequenced strains of Streptococcus equi subsp. equi.
Published in:
Equine Veterinary Journal, 2023, v. 55, n. 1, p. 92, doi. 10.1111/evj.13552
By:
- Frosth, Sara;
- Morris, Ellen Ruth A.;
- Wilson, Hayley;
- Frykberg, Lars;
- Jacobsson, Karin;
- Parkhill, Julian;
- Flock, Jan‐Ingmar;
- Wood, Tim;
- Guss, Bengt;
- Aanensen, David M.;
- Boyle, Ashley G.;
- Riihimäki, Miia;
- Cohen, Noah D.;
- Waller, Andrew S.
Publication type:
Article
Population genomics and antimicrobial resistance dynamics of Escherichia coli in wastewater and river environments.
Published in:
Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-01949-x
By:
- Delgado-Blas, Jose F.;
- Ovejero, Cristina M.;
- David, Sophia;
- Montero, Natalia;
- Calero-Caceres, William;
- Garcillan-Barcia, M. Pilar;
- de la Cruz, Fernando;
- Muniesa, Maite;
- Aanensen, David M.;
- Gonzalez-Zorn, Bruno
Publication type:
Article
Circulation of Third-Generation Cephalosporin Resistant Salmonella Typhi in Mumbai, India.
Published in:
Clinical Infectious Diseases, 2022, v. 74, n. 12, p. 2234, doi. 10.1093/cid/ciab897
By:
- Argimón, Silvia;
- Nagaraj, Geetha;
- Shamanna, Varun;
- Sravani, Dharmavaram;
- Vasanth, Ashwini Kodlipet;
- Prasanna, Akshatha;
- Poojary, Aruna;
- Bari, Anurag Kumar;
- Underwood, Anthony;
- Kekre, Mihir;
- Baker, Stephen;
- Aanensen, David M;
- Lingegowda, Ravikumar Kadahalli
Publication type:
Article
Integrating Scalable Genome Sequencing Into Microbiology Laboratories for Routine Antimicrobial Resistance Surveillance.
Published in:
Clinical Infectious Diseases, 2021, v. 73, p. S258, doi. 10.1093/cid/ciab796
By:
- Kekre, Mihir;
- Arevalo, Stefany Alejandra;
- Valencia, María Fernanda;
- Lagrada, Marietta L;
- Macaranas, Polle Krystle V;
- Nagaraj, Geetha;
- Oaikhena, Anderson O;
- Olorosa, Agnettah M;
- Aanensen, David M;
- Resistance, NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial
Publication type:
Article
Overcoming Data Bottlenecks in Genomic Pathogen Surveillance.
Published in:
Clinical Infectious Diseases, 2021, v. 73, p. S267, doi. 10.1093/cid/ciab785
By:
- Afolayan, Ayorinde O;
- Bernal, Johan Fabian;
- Gayeta, June M;
- Masim, Melissa L;
- Shamanna, Varun;
- Abrudan, Monica;
- Abudahab, Khalil;
- Argimón, Silvia;
- Carlos, Celia C;
- Sia, Sonia;
- Ravikumar, Kadahalli L;
- Okeke, Iruka N;
- Donado-Godoy, Pilar;
- Aanensen, David M;
- Underwood, Anthony;
- Resistance, NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial
Publication type:
Article
Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch.
Published in:
Clinical Infectious Diseases, 2021, v. 73, p. S325, doi. 10.1093/cid/ciab784
By:
- Argimón, Silvia;
- David, Sophia;
- Underwood, Anthony;
- Abrudan, Monica;
- Wheeler, Nicole E;
- Kekre, Mihir;
- Abudahab, Khalil;
- Yeats, Corin A;
- Goater, Richard;
- Taylor, Ben;
- Harste, Harry;
- Muddyman, Dawn;
- Feil, Edward J;
- Brisse, Sylvain;
- Holt, Kathryn;
- Donado-Godoy, Pilar;
- Ravikumar, K L;
- Okeke, Iruka N;
- Carlos, Celia;
- Aanensen, David M
Publication type:
Article
Complexity of Genomic Epidemiology of Carbapenem-Resistant Klebsiella pneumoniae Isolates in Colombia Urges the Reinforcement of Whole Genome Sequencing-Based Surveillance Programs.
Published in:
Clinical Infectious Diseases, 2021, v. 73, p. S290, doi. 10.1093/cid/ciab777
By:
- Saavedra, Sandra Yamile;
- Bernal, Johan Fabian;
- Montilla-Escudero, Efraín;
- Arévalo, Stefany Alejandra;
- Prada, Diego Andrés;
- Valencia, María Fernanda;
- Moreno, Jaime;
- Hidalgo, Andrea Melissa;
- García-Vega, Ángela Sofía;
- Abrudan, Monica;
- Argimón, Silvia;
- Kekre, Mihir;
- Underwood, Anthony;
- Aanensen, David M;
- Duarte, Carolina;
- Donado-Godoy, Pilar;
- Resistance, NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial
Publication type:
Article
Implementing Whole-Genome Sequencing for Ongoing Surveillance of Antimicrobial Resistance: Exemplifying Insights Into Klebsiella pneumoniae.
Published in:
Clinical Infectious Diseases, 2021, v. 73, p. S255, doi. 10.1093/cid/ciab795
By:
- Aanensen, David M;
- Carlos, Celia C;
- Donado-Godoy, Pilar;
- Okeke, Iruka N;
- Ravikumar, K L;
- Resistance, NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial
Publication type:
Article
Genome Sequencing Identifies Previously Unrecognized Klebsiella pneumoniae Outbreaks in Neonatal Intensive Care Units in the Philippines.
Published in:
Clinical Infectious Diseases, 2021, v. 73, p. S316, doi. 10.1093/cid/ciab776
By:
- Carlos, Celia C;
- Masim, Melissa Ana L;
- Lagrada, Marietta L;
- Gayeta, June M;
- Macaranas, Polle Krystle V;
- Sia, Sonia B;
- Facun, Maria Adelina M;
- Palarca, Janziel Fiel C;
- Olorosa, Agnettah M;
- Cueno, Gicell Anne C;
- Abrudan, Monica;
- Abudahab, Khalil;
- Argimón, Silvia;
- Kekre, Mihir;
- Underwood, Anthony;
- Stelling, John;
- Aanensen, David M;
- Resistance, NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial
Publication type:
Article
Train-the-Trainer as an Effective Approach to Building Global Networks of Experts in Genomic Surveillance of Antimicrobial Resistance (AMR).
Published in:
Clinical Infectious Diseases, 2021, v. 73, p. S283, doi. 10.1093/cid/ciab770
By:
- Abrudan, Monica;
- Matimba, Alice;
- Nikolic, Dusanka;
- Hughes, Darren;
- Argimón, Silvia;
- Kekre, Mihir;
- Underwood, Anthony;
- Aanensen, David M;
- Resistance, NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial
Publication type:
Article