Works by Aanensen, David

Results: 60

Author Correction: Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris.

Published in:

Emerging Microbes & Infections, 2018, v. 7, n. 1, p. 1, doi. 10.1038/s41426-018-0098-x

By:

Rhodes, Johanna;
Abdolrasouli, Alireza;
Farrer, Rhys A.;
Cuomo, Christina A.;
Aanensen, David M.;
Armstrong-James, Darius;
Fisher, Matthew C.;
Schelenz, Silke

Publication type:

Article

Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris.

Published in:

Emerging Microbes & Infections, 2018, v. 7, n. 1, p. 1, doi. 10.1038/s41426-018-0045-x

By:

Rhodes, Johanna;
Abdolrasouli, Alireza;
Farrer, Rhys A.;
Cuomo, Christina A.;
Aanensen, David M.;
Armstrong-James, Darius;
Fisher, Matthew C.;
Schelenz, Silke

Publication type:

Article

Author Correction: Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris.

Published in:

Emerging Microbes & Infections, 2018, v. 7, n. 1, p. 1, doi. 10.1038/s41426-018-0098-x

By:

Rhodes, Johanna;
Abdolrasouli, Alireza;
Farrer, Rhys A.;
Cuomo, Christina A.;
Aanensen, David M.;
Armstrong-James, Darius;
Fisher, Matthew C.;
Schelenz, Silke

Publication type:

Article

Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris.

Published in:

Emerging Microbes & Infections, 2018, v. 7, n. 1, p. 1, doi. 10.1038/s41426-018-0045-x

By:

Rhodes, Johanna;
Abdolrasouli, Alireza;
Farrer, Rhys A.;
Cuomo, Christina A.;
Aanensen, David M.;
Armstrong-James, Darius;
Fisher, Matthew C.;
Schelenz, Silke

Publication type:

Article

Genomic surveillance of Salmonella spp. in the Philippines during 2013–2014.

Published in:

Transactions of the Royal Society of Tropical Medicine & Hygiene, 2022, v. 116, n. 12, p. 1202, doi. 10.1093/trstmh/trac080

By:

Lagrada, Marietta L;
Argimón, Silvia;
Borlasa, Janice B;
Abad, Jaywardeen P;
Gayeta, June M;
Masim, Melissa L;
Olorosa, Agnettah M;
Cohen, Victoria;
Jeffrey, Benjamin;
Abudahab, Khalil;
Sia, Sonia B;
Hufano, Charmian M;
Stelling, John;
Holden, Matthew T G;
Aanensen, David M;
Carlos, Celia C

Publication type:

Article

Surveillance of strangles in UK horses between 2015 and 2019 based on laboratory detection of Streptococcus equi.

Published in:

Veterinary Record: Journal of the British Veterinary Association, 2021, v. 189, n. 12, p. 1, doi. 10.1002/vetr.948

By:

McGlennon, Abigail;
Waller, Andrew;
Verheyen, Kristien;
Slater, Josh;
Grewar, John;
Aanensen, David;
Newton, Richard

Publication type:

Article

Widespread emergence of OmpK36 loop 3 insertions among multidrug-resistant clones of Klebsiella pneumoniae.

Published in:

PLoS Pathogens, 2022, v. 18, n. 7, p. 1, doi. 10.1371/journal.ppat.1010334

By:

David, Sophia;
Wong, Joshua L. C.;
Sanchez-Garrido, Julia;
Kwong, Hok-Sau;
Low, Wen Wen;
Morecchiato, Fabio;
Giani, Tommaso;
Rossolini, Gian Maria;
Brett, Stephen J.;
Clements, Abigail;
Beis, Konstantinos;
Aanensen, David M.;
Frankel, Gad

Publication type:

Article

Population genomics and antimicrobial resistance dynamics of Escherichia coli in wastewater and river environments.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-01949-x

By:

Delgado-Blas, Jose F.;
Ovejero, Cristina M.;
David, Sophia;
Montero, Natalia;
Calero-Caceres, William;
Garcillan-Barcia, M. Pilar;
de la Cruz, Fernando;
Muniesa, Maite;
Aanensen, David M.;
Gonzalez-Zorn, Bruno

Publication type:

Article

Melioidosis Caused by Burkholderia pseudomallei in Drinking Water, Thailand, 2012.

Published in:

Emerging Infectious Diseases, 2014, v. 20, n. 2, p. 265, doi. 10.3201/eid2002.121891

By:

Limmathurotsakul, Direk;
Wongsuvan, Gumphol;
Aanensen, David;
Ngamwilai, Sujittra;
Saiprom, Natnaree;
Rongkard, Patpong;
Thaipadungpanit, Janjira;
Kanoksil, Manas;
Chantratits, Narisara;
Day, Nicholas P. J.;
Peacock, Sharon J.

Publication type:

Article

The multilocus sequence typing network: mlst.net.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w728, doi. 10.1093/nar/gki415

By:

Aanensen, David M.;
Spratt, Brian G.

Publication type:

Article

A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23091-2

By:

Argimón, Silvia;
Yeats, Corin A.;
Goater, Richard J.;
Abudahab, Khalil;
Taylor, Benjamin;
Underwood, Anthony;
Sánchez-Busó, Leonor;
Wong, Vanessa K.;
Dyson, Zoe A.;
Nair, Satheesh;
Park, Se Eun;
Marks, Florian;
Page, Andrew J.;
Keane, Jacqueline A.;
Baker, Stephen;
Holt, Kathryn E.;
Dougan, Gordon;
Aanensen, David M.

Publication type:

Article

A Single Multilocus Sequence Typing (MLST) Scheme for Seven Pathogenic Leptospira Species.

Published in:

PLoS Neglected Tropical Diseases, 2013, v. 7, n. 1, p. 1, doi. 10.1371/journal.pntd.0001954

By:

Boonsilp, Siriphan;
Thaipadungpanit, Janjira;
Amornchai, Premjit;
Wuthiekanun, Vanaporn;
Bailey, Mark S.;
Holden, Matthew T. G.;
Zhang, Cuicai;
Jiang, Xiugao;
Koizumi, Nobuo;
Taylor, Kyle;
Galloway, Renee;
Hoffmaster, Alex R.;
Craig, Scott;
Smythe, Lee D.;
Hartskeerl, Rudy A.;
Day, Nicholas P.;
Chantratita, Narisara;
Feil, Edward J.;
Aanensen, David M.;
Spratt, Brian G.

Publication type:

Article

A Single Multilocus Sequence Typing (MLST) Scheme for Seven Pathogenic Leptospira Species.

Published in:

PLoS Neglected Tropical Diseases, 2013, v. 7, n. 1, p. 1, doi. 10.1371/journal.pntd.0001954

By:

Boonsilp, Siriphan;
Thaipadungpanit, Janjira;
Amornchai, Premjit;
Wuthiekanun, Vanaporn;
Bailey, Mark S.;
Holden, Matthew T. G.;
Cuicai Zhang;
Xiugao Jiang;
Koizumi, Nobuo;
Taylor, Kyle;
Galloway, Renee;
Hoffmaster, Alex R.;
Craig, Scott;
Smythe, Lee D.;
Hartskeerl, Rudy A.;
Day, Nicholas P.;
Chantratita, Narisara;
Feil, Edward J.;
Aanensen, David M.;
Spratt, Brian G.

Publication type:

Article

Capturing Data on Antimicrobial Resistance Patterns and Trends in Use in Regions of Asia (CAPTURA).

Published in:

Clinical Infectious Diseases, 2023, v. 77, p. S500, doi. 10.1093/cid/ciad567

By:

Holm, Marianne;
MacWright, William R;
Poudyal, Nimesh;
Shaw, Alina G;
Joh, Hea Sun;
Gallagher, Patrick F;
Kim, Jong-Hoon;
Shaikh, Affan T;
Seo, Hye Jin;
Kwon, Soo Young;
Prifti, Kristi;
Dolabella, Brooke;
Taylor, Ben E W;
Yeats, Corin;
Aanensen, David M;
Stelling, John;
Marks, Florian

Publication type:

Article

Circulation of Third-Generation Cephalosporin Resistant Salmonella Typhi in Mumbai, India.

Published in:

Clinical Infectious Diseases, 2022, v. 74, n. 12, p. 2234, doi. 10.1093/cid/ciab897

By:

Argimón, Silvia;
Nagaraj, Geetha;
Shamanna, Varun;
Sravani, Dharmavaram;
Vasanth, Ashwini Kodlipet;
Prasanna, Akshatha;
Poojary, Aruna;
Bari, Anurag Kumar;
Underwood, Anthony;
Kekre, Mihir;
Baker, Stephen;
Aanensen, David M;
Lingegowda, Ravikumar Kadahalli

Publication type:

Article

Integrating Scalable Genome Sequencing Into Microbiology Laboratories for Routine Antimicrobial Resistance Surveillance.

Published in:

Clinical Infectious Diseases, 2021, v. 73, p. S258, doi. 10.1093/cid/ciab796

By:

Kekre, Mihir;
Arevalo, Stefany Alejandra;
Valencia, María Fernanda;
Lagrada, Marietta L;
Macaranas, Polle Krystle V;
Nagaraj, Geetha;
Oaikhena, Anderson O;
Olorosa, Agnettah M;
Aanensen, David M;
Resistance, NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial

Publication type:

Article

Good Financial Grant Practice: A Tool for Developing and Demonstrating Institutional Financial and Grant Management Capacity in Global Health.

Published in:

Clinical Infectious Diseases, 2021, v. 73, p. S275, doi. 10.1093/cid/ciab768

By:

Harste, Harry J;
Kiff, Genevieve;
Okeke, Iruka N;
Adebiyi, Akindele O;
Ravikumar, K L;
Nagaraj, Geetha;
Ajiboye, Jolaade J;
Castro, Erik C D Osma;
Herrera, Elmer;
Aanensen, David M;
Resistance, NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial

Publication type:

Article

High-Resolution Genomic Profiling of Carbapenem-Resistant Klebsiella pneumoniae Isolates: A Multicentric Retrospective Indian Study.

Published in:

Clinical Infectious Diseases, 2021, v. 73, p. S300, doi. 10.1093/cid/ciab767

By:

Nagaraj, Geetha;
Shamanna, Varun;
Govindan, Vandana;
Rose, Steffimole;
Sravani, D;
Akshata, K P;
Shincy, M R;
Venkatesha, V T;
Abrudan, Monica;
Argimón, Silvia;
Kekre, Mihir;
Underwood, Anthony;
Aanensen, David M;
Ravikumar, K L;
Resistance, NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial

Publication type:

Article

Implementing Whole-Genome Sequencing for Ongoing Surveillance of Antimicrobial Resistance: Exemplifying Insights Into Klebsiella pneumoniae.

Published in:

Clinical Infectious Diseases, 2021, v. 73, p. S255, doi. 10.1093/cid/ciab795

By:

Aanensen, David M;
Carlos, Celia C;
Donado-Godoy, Pilar;
Okeke, Iruka N;
Ravikumar, K L;
Resistance, NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial

Publication type:

Article

Overcoming Data Bottlenecks in Genomic Pathogen Surveillance.

Published in:

Clinical Infectious Diseases, 2021, v. 73, p. S267, doi. 10.1093/cid/ciab785

By:

Afolayan, Ayorinde O;
Bernal, Johan Fabian;
Gayeta, June M;
Masim, Melissa L;
Shamanna, Varun;
Abrudan, Monica;
Abudahab, Khalil;
Argimón, Silvia;
Carlos, Celia C;
Sia, Sonia;
Ravikumar, Kadahalli L;
Okeke, Iruka N;
Donado-Godoy, Pilar;
Aanensen, David M;
Underwood, Anthony;
Resistance, NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial

Publication type:

Article

Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch.

Published in:

Clinical Infectious Diseases, 2021, v. 73, p. S325, doi. 10.1093/cid/ciab784

By:

Argimón, Silvia;
David, Sophia;
Underwood, Anthony;
Abrudan, Monica;
Wheeler, Nicole E;
Kekre, Mihir;
Abudahab, Khalil;
Yeats, Corin A;
Goater, Richard;
Taylor, Ben;
Harste, Harry;
Muddyman, Dawn;
Feil, Edward J;
Brisse, Sylvain;
Holt, Kathryn;
Donado-Godoy, Pilar;
Ravikumar, K L;
Okeke, Iruka N;
Carlos, Celia;
Aanensen, David M

Publication type:

Article

Complexity of Genomic Epidemiology of Carbapenem-Resistant Klebsiella pneumoniae Isolates in Colombia Urges the Reinforcement of Whole Genome Sequencing-Based Surveillance Programs.

Published in:

Clinical Infectious Diseases, 2021, v. 73, p. S290, doi. 10.1093/cid/ciab777

By:

Saavedra, Sandra Yamile;
Bernal, Johan Fabian;
Montilla-Escudero, Efraín;
Arévalo, Stefany Alejandra;
Prada, Diego Andrés;
Valencia, María Fernanda;
Moreno, Jaime;
Hidalgo, Andrea Melissa;
García-Vega, Ángela Sofía;
Abrudan, Monica;
Argimón, Silvia;
Kekre, Mihir;
Underwood, Anthony;
Aanensen, David M;
Duarte, Carolina;
Donado-Godoy, Pilar;
Resistance, NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial

Publication type:

Article

Genome Sequencing Identifies Previously Unrecognized Klebsiella pneumoniae Outbreaks in Neonatal Intensive Care Units in the Philippines.

Published in:

Clinical Infectious Diseases, 2021, v. 73, p. S316, doi. 10.1093/cid/ciab776

By:

Carlos, Celia C;
Masim, Melissa Ana L;
Lagrada, Marietta L;
Gayeta, June M;
Macaranas, Polle Krystle V;
Sia, Sonia B;
Facun, Maria Adelina M;
Palarca, Janziel Fiel C;
Olorosa, Agnettah M;
Cueno, Gicell Anne C;
Abrudan, Monica;
Abudahab, Khalil;
Argimón, Silvia;
Kekre, Mihir;
Underwood, Anthony;
Stelling, John;
Aanensen, David M;
Resistance, NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial

Publication type:

Article

Train-the-Trainer as an Effective Approach to Building Global Networks of Experts in Genomic Surveillance of Antimicrobial Resistance (AMR).

Published in:

Clinical Infectious Diseases, 2021, v. 73, p. S283, doi. 10.1093/cid/ciab770

By:

Abrudan, Monica;
Matimba, Alice;
Nikolic, Dusanka;
Hughes, Darren;
Argimón, Silvia;
Kekre, Mihir;
Underwood, Anthony;
Aanensen, David M;
Resistance, NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial

Publication type:

Article

Clones and Clusters of Antimicrobial-Resistant Klebsiella From Southwestern Nigeria.

Published in:

Clinical Infectious Diseases, 2021, v. 73, p. S308, doi. 10.1093/cid/ciab769

By:

Afolayan, Ayorinde O;
Oaikhena, Anderson O;
Aboderin, Aaron O;
Olabisi, Olatunde F;
Amupitan, Adewale A;
Abiri, Oyekola V;
Ogunleye, Veronica O;
Odih, Erkison Ewomazino;
Adeyemo, Abolaji T;
Adeyemo, Adeyemi T;
Obadare, Temitope O;
Abrudan, Monica;
Argimón, Silvia;
David, Sophia;
Kekre, Mihir;
Underwood, Anthony;
Egwuenu, Abiodun;
Ihekweazu, Chikwe;
Aanensen, David M;
Okeke, Iruka N

Publication type:

Article

Genetic Analysis of the Capsular Biosynthetic Locus from All 90 Pneumococcal Serotypes.

Published in:

PLoS Genetics, 2006, v. 2, n. 3, p. e31, doi. 10.1371/journal.pgen.0020031

By:

Bentley, Stephen D.;
Aanensen, David M.;
Mavroidi, Angeliki;
Saunders, David;
Rabbinowitsch, Ester;
Collins, Matthew;
Donohoe, Kathy;
Harris, David;
Murphy, Lee;
Quail, Michael A.;
Samuel, Gabby;
Skovsted, Ian C.;
Kaltoft, Margit Staum;
Barrell, Bart;
Reeves, Peter R.;
Parkhill, Julian;
Spratt, Brian G.

Publication type:

Article

Geographic Distribution of Staphylococcus aureus Causing Invasive Infections in Europe: A Molecular-Epidemiological Analysis.

Published in:

PLoS Medicine, 2010, v. 7, n. 1, p. 1, doi. 10.1371/journal.pmed.1000215

By:

Grundmann, Hajo;
Aanensen, David M.;
van den Wijngaard, Cees C.;
Spratt, Brian G.;
Harmsen, Dag;
Friedrich, Alexander W.

Publication type:

Article

Host migration impacts on the phylogeography of Lyme Borreliosis spirochaete species in Europe.

Published in:

Environmental Microbiology, 2011, v. 13, n. 1, p. 184, doi. 10.1111/j.1462-2920.2010.02319.x

By:

Vollmer, Stephanie A.;
Bormane, Antra;
Dinnis, Ruth E.;
Seelig, Frederik;
Dobson, Andrew D. M.;
Aanensen, David M.;
James, Marianne C.;
Donaghy, Michael;
Randolph, Sarah E.;
Feil, Edward J.;
Kurtenbach, Klaus;
Margos, Gabriele

Publication type:

Article

Dense genomic sampling identifies highways of pneumococcal recombination.

Published in:

Nature Genetics, 2014, v. 46, n. 3, p. 305, doi. 10.1038/ng.2895

By:

Chewapreecha, Claire;
Harris, Simon R;
Croucher, Nicholas J;
Turner, Claudia;
Marttinen, Pekka;
Cheng, Lu;
Pessia, Alberto;
Aanensen, David M;
Mather, Alison E;
Page, Andrew J;
Salter, Susannah J;
Harris, David;
Nosten, Francois;
Goldblatt, David;
Corander, Jukka;
Parkhill, Julian;
Turner, Paul;
Bentley, Stephen D

Publication type:

Article

Conservation of vaccine antigen sequences encoded by sequenced strains of Streptococcus equi subsp. equi.

Published in:

Equine Veterinary Journal, 2023, v. 55, n. 1, p. 92, doi. 10.1111/evj.13552

By:

Frosth, Sara;
Morris, Ellen Ruth A.;
Wilson, Hayley;
Frykberg, Lars;
Jacobsson, Karin;
Parkhill, Julian;
Flock, Jan‐Ingmar;
Wood, Tim;
Guss, Bengt;
Aanensen, David M.;
Boyle, Ashley G.;
Riihimäki, Miia;
Cohen, Noah D.;
Waller, Andrew S.

Publication type:

Article

Consensus multi-locus sequence typing scheme for Cryptococcus neoformans and Cryptococcus gattii.

Published in:

Medical Mycology, 2009, v. 47, n. 6, p. 561, doi. 10.1080/13693780902953886

By:

Meyer, Wieland;
Aanensen, David M.;
Boekhout, Teun;
Cogliati, Massimo;
Diaz, Mara R.;
Esposto, Maria Carmela;
Fisher, Matthew;
Gilgado, Felix;
Hagen, Ferry;
Kaocharoen, Sirada;
Litvintseva, Anastasia P.;
Mitchell, Thomas G.;
Simwami, Sitali P.;
Trilles, Luciana;
Viviani, Maria Anna;
Kwon-Chung, June

Publication type:

Article

The Promise of Whole Genome Pathogen Sequencing for the Molecular Epidemiology of Emerging Aquaculture Pathogens.

Published in:

Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00121

By:

Bayliss, Sion C.;
Verner-Jeffreys, David W.;
Bartie, Kerry L.;
Aanensen, David M.;
Sheppard, Samuel K.;
Adams, Alexandra;
Feil, Edward J.

Publication type:

Article

Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination.

Published in:

Molecular Biology & Evolution, 2017, v. 34, n. 10, p. 2537, doi. 10.1093/molbev/msx173

By:

Mostowy, Rafał J.;
Croucher, Nicholas J.;
De Maio, Nicola;
Chewapreecha, Claire;
Salter, Susannah J.;
Turner, Paul;
Aanensen, David M.;
Bentley, Stephen D.;
Didelot, Xavier;
Fraser, Christophe

Publication type:

Article

Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software.

Published in:

Molecular Biology & Evolution, 2013, v. 30, n. 5, p. 1224, doi. 10.1093/molbev/mst028

By:

Cheng, Lu;
Connor, Thomas R.;
Sirén, Jukka;
Aanensen, David M.;
Corander, Jukka

Publication type:

Article

Phandango: an interactive viewer for bacterial population genomics.

Published in:

Bioinformatics, 2018, v. 34, n. 2, p. 292, doi. 10.1093/bioinformatics/btx610

By:

Hadfield, James;
Croucher, Nicholas J;
Goater, Richard J;
Abudahab, Khalil;
Aanensen, David M;
Harris, Simon R

Publication type:

Article

Unlocking the Potential of Genomic Data to Inform Typhoid Fever Control Policy: Supportive Resources for Genomic Data Generation, Analysis, and Visualization.

Published in:

Open Forum Infectious Diseases, 2023, v. 10, p. S38, doi. 10.1093/ofid/ofad044

By:

Carey, Megan E;
Dyson, Zoe A;
Argimón, Silvia;
Cerdeira, Louise;
Yeats, Corin;
Aanensen, David;
Mboowa, Gerald;
Baker, Stephen;
Tessema, Sofonias K;
Smith, Anthony M;
Okeke, Iruka N;
Holt, Kathryn E

Publication type:

Article

CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance.

Published in:

2021

By:

Nicholls, Samuel M.;
Poplawski, Radoslaw;
Bull, Matthew J.;
Underwood, Anthony;
Chapman, Michael;
Abu-Dahab, Khalil;
Taylor, Ben;
Colquhoun, Rachel M.;
Rowe, Will P. M.;
Jackson, Ben;
Hill, Verity;
O'Toole, Áine;
Rey, Sara;
Southgate, Joel;
Amato, Roberto;
Livett, Rich;
Gonçalves, Sónia;
Harrison, Ewan M.;
Peacock, Sharon J.;
Aanensen, David M.

Publication type:

Editorial

The TyphiNET data visualisation dashboard: unlocking Salmonella Typhi genomics data to support public health.

Published in:

Genome Medicine, 2025, v. 17, n. 1, p. 1, doi. 10.1186/s13073-025-01470-4

By:

Dyson, Zoe A.;
Cerdeira, Louise;
Sharma, Vandana;
Carey, Megan E.;
Holt, Kathryn E.;
Aanensen, David M.;
Abbas, Ali H.;
Fayad, Antoine Abou;
Afolayan, Ayorinde O.;
Ahmed, Niyaz;
Ahmed, Irshad;
Amir, Afreenish;
Andleeb, Saadia;
Argimón, Silvia;
Aseffa, Abraham;
Ashton, Philip M.;
Aworh, Mabel K.;
Bavdekar, Ashish R.;
Chattaway, Marie A.;
Chew, Ka Lip

Publication type:

Article

Genomic characterization of invasive typhoidal and non-typhoidal Salmonella in southwestern Nigeria.

Published in:

PLoS Neglected Tropical Diseases, 2022, v. 16, n. 8, p. 1, doi. 10.1371/journal.pntd.0010716

By:

Ikhimiukor, Odion O.;
Oaikhena, Anderson O.;
Afolayan, Ayorinde O.;
Fadeyi, Abayomi;
Kehinde, Aderemi;
Ogunleye, Veronica O.;
Aboderin, Aaron O.;
Oduyebo, Oyinlola O.;
Elikwu, Charles J.;
Odih, Erkison Ewomazino;
Komolafe, Ifeoluwa;
Argimón, Silvia;
Egwuenu, Abiodun;
Adebiyi, Ini;
Sadare, Oluwadamilola A.;
Okwor, Tochi;
Kekre, Mihir;
Underwood, Anthony;
Ihekweazu, Chikwe;
Aanensen, David M.

Publication type:

Article

Comparison of Two Multilocus Sequence Based Genotyping Schemes for Leptospira Species.

Published in:

PLoS Neglected Tropical Diseases, 2011, v. 5, n. 11, p. 1, doi. 10.1371/journal.pntd.0001374

By:

Ahmed, Ahmed;
Thaipadungpanit, Janjira;
Boonsilp, Siriphan;
Wuthiekanun, Vanaporn;
Nalam, Kishore;
Spratt, Brian G.;
Aanensen, David M.;
Smythe, Lee D.;
Ahmed, Niyaz;
Feil, Edward J.;
Hartskeerl, Rudy A.;
Peacock, Sharon J.

Publication type:

Article

Comparison of Two Multilocus Sequence Based Genotyping Schemes for Leptospira Species.

Published in:

PLoS Neglected Tropical Diseases, 2011, v. 5, n. 11, p. 1, doi. 10.1371/journal.pntd.0001374

By:

Ahmed, Ahmed;
Thaipadungpanit, Janjira;
Boonsilp, Siriphan;
Wuthiekanun, Vanaporn;
Nalam, Kishore;
Spratt, Brian G.;
Aanensen, David M.;
Smythe, Lee D.;
Ahmed, Niyaz;
Feil, Edward J.;
Hartskeerl, Rudy A.;
Peacock, Sharon J.

Publication type:

Article

Low Diversity Cryptococcus neoformans Variety grubii Multilocus Sequence Types from Thailand Are Consistent with an Ancestral African Origin.

Published in:

PLoS Pathogens, 2011, v. 7, n. 4, p. 1, doi. 10.1371/journal.ppat.1001343

By:

Simwami, Sitali P.;
Khayhan, Kantarawee;
Henk, Daniel A.;
Aanensen, David M.;
Boekhout, Teun;
Hagen, Ferry;
Brouwer, Annemarie E.;
Harrison, Thomas S.;
Donnelly, Christl A.;
Fisher, Matthew C.

Publication type:

Article

Genomic Evidence for the Evolution of Streptococcus equi: Host Restriction, Increased Virulence, and Genetic Exchange with Human Pathogens.

Published in:

PLoS Pathogens, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.ppat.1000346

By:

Holden, Matthew T. G.;
Heather, Zoe;
Paillot, Romain;
Steward, Karen F.;
Webb, Katy;
Ainslie, Fern;
Jourdan, Thibaud;
Bason, Nathalie C.;
Holroyd, Nancy E.;
Mungall, Karen;
Quail, Michael A.;
Sanders, Mandy;
Simmonds, Mark;
Willey, David;
Brooks, Karen;
Aanensen, David M.;
Spratt, Brian G.;
Jolley, Keith A.;
Maiden, Martin C. J.;
Kehoe, Michael

Publication type:

Article

A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch.

Published in:

Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00858-2

By:

Sánchez-Busó, Leonor;
Yeats, Corin A.;
Taylor, Benjamin;
Goater, Richard J.;
Underwood, Anthony;
Abudahab, Khalil;
Argimón, Silvia;
Ma, Kevin C.;
Mortimer, Tatum D.;
Golparian, Daniel;
Cole, Michelle J.;
Grad, Yonatan H.;
Martin, Irene;
Raphael, Brian H.;
Shafer, William M.;
Town, Katy;
Wi, Teodora;
Harris, Simon R.;
Unemo, Magnus;
Aanensen, David M.

Publication type:

Article

Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool.

Published in:

Virus Evolution, 2021, v. 7, n. 2, p. 1, doi. 10.1093/ve/veab064

By:

O'Toole, Áine;
Scher, Emily;
Underwood, Anthony;
Jackson, Ben;
Hill, Verity;
McCrone, John T;
Colquhoun, Rachel;
Ruis, Chris;
Abu-Dahab, Khalil;
Taylor, Ben;
Yeats, Corin;
Plessis, Louis du;
Maloney, Daniel;
Medd, Nathan;
Attwood, Stephen W;
Aanensen, David M;
Holmes, Edward C;
Pybus, Oliver G;
Rambaut, Andrew

Publication type:

Article

Multilocus Sequence Typing and Further Genetic Characterization of the Enigmatic Pathogen, Staphylococcus hominis.

Published in:

PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0066496

By:

Zhang, Liangfen;
Thomas, Jonathan C.;
Miragaia, Maria;
Bouchami, Ons;
Chaves, Fernando;
d’Azevedo, Pedro A.;
Aanensen, David M.;
de Lencastre, Herminia;
Gray, Barry M.;
Robinson, D. Ashley

Publication type:

Article

Mapping the Global Emergence of Batrachochytrium dendrobatidis, the Amphibian Chytrid Fungus.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0056802

By:

Olson, Deanna H.;
Aanensen, David M.;
Ronnenberg, Kathryn L.;
Powell, Christopher I.;
Walker, Susan F.;
Bielby, Jon;
Garner, Trenton W. J.;
Weaver, George;
Fisher, Matthew C.

Publication type:

Article

EpiCollect: Linking Smartphones to Web Applications for Epidemiology, Ecology and Community Data Collection.

Published in:

PLoS ONE, 2009, v. 4, n. 9, p. 1, doi. 10.1371/journal.pone.0006968

By:

Aanensen, David M.;
Huntley, Derek M.;
Feil, Edward J.;
al-Own, Fada'a;
Spratt, Brian G.

Publication type:

Article

COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-14016-0

By:

Kläser, Kerstin;
Molteni, Erika;
Graham, Mark;
Canas, Liane S.;
Österdahl, Marc F.;
Antonelli, Michela;
Chen, Liyuan;
Deng, Jie;
Murray, Benjamin;
Kerfoot, Eric;
Wolf, Jonathan;
May, Anna;
Fox, Ben;
Capdevila, Joan;
The COVID-19 Genomics U. K. (COG-UK) Consortium;
Aanensen, David M.;
Abudahab, Khalil;
Adams, Helen;
Adams, Alexander;
Afifi, Safiah

Publication type:

Article

Novel Subclone of Carbapenem-Resistant Klebsiella pneumoniae Sequence Type 11 with Enhanced Virulence and Transmissibility, China.

Published in:

2020

By:

Kai Zhou;
Tingting Xiao;
David, Sophia;
Qin Wang;
Yanzi Zhou;
Lihua Guo;
Aanensen, David;
Holt, Kathryn E.;
Thomson, Nicholas R.;
Grundmann, Hajo;
Ping Shen;
Yonghong Xiao;
Zhou, Kai;
Xiao, Tingting;
Wang, Qin;
Zhou, Yanzi;
Guo, Lihua;
Shen, Ping;
Xiao, Yonghong

Publication type:

journal article