Works matching IS 03051048 AND DT 2014 AND VI 42 AND IP 9

Results: 66

Genome-wide analysis of regulation of gene expression and H3K9me2 distribution by JIL-1 kinase mediated histone H3S10 phosphorylation in Drosophila.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5456, doi. 10.1093/nar/gku173

By:

Cai, Weili;
Wang, Chao;
Li, Yeran;
Yao, Changfu;
Shen, Lu;
Liu, Sanzhen;
Bao, Xiaomin;
Schnable, Patrick S.;
Girton, Jack;
Johansen, Jørgen;
Johansen, Kristen M.

Publication type:

Article

Myc-induced anchorage of the rDNA IGS region to nucleolar matrix modulates growth-stimulated changes in higher-order rDNA architecture.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5505, doi. 10.1093/nar/gku183

By:

Shiue, Chiou-Nan;
Nematollahi-Mahani, Amir;
Wright, Anthony P.H.

Publication type:

Article

A high-throughput chemical screen with FDA approved drugs reveals that the antihypertensive drug Spironolactone impairs cancer cell survival by inhibiting homology directed repair.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5689, doi. 10.1093/nar/gku217

By:

Shahar, Or David;
Kalousi, Alkmini;
Eini, Lital;
Fisher, Benoit;
Weiss, Amelie;
Darr, Jonatan;
Mazina, Olga;
Bramson, Shay;
Kupiec, Martin;
Eden, Amir;
Meshorer, Eran;
Mazin, Alexander V.;
Brino, Laurent;
Goldberg, Michal;
Soutoglou, Evi

Publication type:

Article

Solution structure of a 2:1 complex of anticancer drug XR5944 with TFF1 estrogen response element: insights into DNA recognition by a bis-intercalator.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 6012, doi. 10.1093/nar/gku219

By:

Lin, Clement;
Mathad, Raveendra I.;
Zhang, Zhenjiang;
Sidell, Neil;
Yang, Danzhou

Publication type:

Article

The DNA damage checkpoint pathway promotes extensive resection and nucleotide synthesis to facilitate homologous recombination repair and genome stability in fission yeast.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5644, doi. 10.1093/nar/gku190

By:

Blaikley, Elizabeth J.;
Tinline-Purvis, Helen;
Kasparek, Torben R.;
Marguerat, Samuel;
Sarkar, Sovan;
Hulme, Lydia;
Hussey, Sharon;
Wee, Boon-Yu;
Deegan, Rachel S.;
Walker, Carol A.;
Pai, Chen-Chun;
Bähler, Jürg;
Nakagawa, Takuro;
Humphrey, Timothy C.

Publication type:

Article

Inferring probabilistic miRNA–mRNA interaction signatures in cancers: a role-switch approach.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. e76, doi. 10.1093/nar/gku182

By:

Li, Yue;
Liang, Cheng;
Wong, Ka-Chun;
Jin, Ke;
Zhang, Zhaolei

Publication type:

Article

Regulation of FANCD2 and FANCI monoubiquitination by their interaction and by DNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5657, doi. 10.1093/nar/gku198

By:

Longerich, Simonne;
Kwon, Youngho;
Tsai, Miaw-Sheue;
Hlaing, Aye Su;
Kupfer, Gary M.;
Sung, Patrick

Publication type:

Article

Nonsense-mediated decay as a terminating mechanism for antisense oligonucleotides.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5871, doi. 10.1093/nar/gku184

By:

Ward, Amanda J.;
Norrbom, Michaela;
Chun, Seung;
Bennett, C. Frank;
Rigo, Frank

Publication type:

Article

Synthetic circuit for exact adaptation and fold-change detection.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 6078, doi. 10.1093/nar/gku233

By:

Kim, Jongmin;
Khetarpal, Ishan;
Sen, Shaunak;
Murray, Richard M.

Publication type:

Article

miR-Synth: a computational resource for the design of multi-site multi-target synthetic miRNAs.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5416

By:

Laganà, Alessandro;
Acunzo, Mario;
Romano, Giulia;
Pulvirenti, Alfredo;
Veneziano, Dario;
Cascione, Luciano;
Giugno, Rosalba;
Gasparini, Pierluigi;
Shasha, Dennis;
Ferro, Alfredo;
Croce, Carlo Maria

Publication type:

Article

Fail-safe mechanism of GCN4 translational control—uORF2 promotes reinitiation by analogous mechanism to uORF1 and thus secures its key role in GCN4 expression.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5880

By:

Gunišová, Stanislava;
Valášek, Leoš Shivaya

Publication type:

Article

A role for [Fe4S4] clusters in tRNA recognition—a theoretical study.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5426, doi. 10.1093/nar/gku227

By:

Stiebritz, Martin T.

Publication type:

Article

Structural and functional studies of Stf76 from the Sulfolobus islandicus plasmid–virus pSSVx: a novel peculiar member of the winged helix–turn–helix transcription factor family.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5993, doi. 10.1093/nar/gku215

By:

Contursi, Patrizia;
Farina, Biancamaria;
Pirone, Luciano;
Fusco, Salvatore;
Russo, Luigi;
Bartolucci, Simonetta;
Fattorusso, Roberto;
Pedone, Emilia

Publication type:

Article

Estimating telomere length from whole genome sequence data.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. e75

By:

Ding, Zhihao;
Mangino, Massimo;
Aviv, Abraham;
Spector, Tim;
Durbin, Richard

Publication type:

Article

Structure, dynamics and RNA binding of the multi-domain splicing factor TIA-1.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5949, doi. 10.1093/nar/gku193

By:

Wang, Iren;
Hennig, Janosch;
Jagtap, Pravin Kumar Ankush;
Sonntag, Miriam;
Valcárcel, Juan;
Sattler, Michael

Publication type:

Article

Molecular dissection of the domain architecture and catalytic activities of human PrimPol.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5830, doi. 10.1093/nar/gku214

By:

Keen, Benjamin A.;
Jozwiakowski, Stanislaw K.;
Bailey, Laura J.;
Bianchi, Julie;
Doherty, Aidan J.

Publication type:

Article

Altering murine leukemia virus integration through disruption of the integrase and BET protein family interaction.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5917, doi. 10.1093/nar/gku175

By:

Aiyer, Sriram;
Swapna, G.V.T.;
Malani, Nirav;
Aramini, James M.;
Schneider, William M.;
Plumb, Matthew R.;
Ghanem, Mustafa;
Larue, Ross C.;
Sharma, Amit;
Studamire, Barbara;
Kvaratskhelia, Mamuka;
Bushman, Frederic D.;
Montelione, Gaetano T.;
Roth, Monica J.

Publication type:

Article

Systematic design and functional analysis of artificial microRNAs.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 6064, doi. 10.1093/nar/gku171

By:

Arroyo, Jason D.;
Gallichotte, Emily N.;
Tewari, Muneesh

Publication type:

Article

Vicinal: a method for the determination of ncRNA ends using chimeric reads from RNA-seq experiments.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. e79, doi. 10.1093/nar/gku207

By:

Lu, Zhipeng;
Matera, A. Gregory

Publication type:

Article

PARP3 affects the relative contribution of homologous recombination and nonhomologous end-joining pathways.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5616, doi. 10.1093/nar/gku174

By:

Beck, Carole;
Boehler, Christian;
Guirouilh Barbat, Josée;
Bonnet, Marie-Elise;
Illuzzi, Giuditta;
Ronde, Philippe;
Gauthier, Laurent R.;
Magroun, Najat;
Rajendran, Anbazhagan;
Lopez, Bernard S.;
Scully, Ralph;
Boussin, François D.;
Schreiber, Valérie;
Dantzer, Françoise

Publication type:

Article

The E3 ubiquitin ligase UBE3A is an integral component of the molecular circadian clock through regulating the BMAL1 transcription factor.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5765, doi. 10.1093/nar/gku225

By:

Gossan, Nicole C.;
Zhang, Feng;
Guo, Baoqiang;
Jin, Ding;
Yoshitane, Hikari;
Yao, Aiyu;
Glossop, Nick;
Zhang, Yong Q.;
Fukada, Yoshitaka;
Meng, Qing-Jun

Publication type:

Article

Human RECQL1 participates in telomere maintenance.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5671, doi. 10.1093/nar/gku200

By:

Popuri, Venkateswarlu;
Hsu, Joseph;
Khadka, Prabhat;
Horvath, Kent;
Liu, Yie;
Croteau, Deborah L.;
Bohr, Vilhelm A.

Publication type:

Article

Bacteriophage λ N protein inhibits transcription slippage by Escherichia coli RNA polymerase.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5823, doi. 10.1093/nar/gku203

By:

Parks, Adam R.;
Court, Carolyn;
Lubkowska, Lucyna;
Jin, Ding J.;
Kashlev, Mikhail;
Court, Donald L.

Publication type:

Article

Crosstalk between transposase subunits during cleavage of the mariner transposon.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5799, doi. 10.1093/nar/gku172

By:

Claeys Bouuaert, Corentin;
Walker, Neil;
Liu, Danxu;
Chalmers, Ronald

Publication type:

Article

Exonic splicing signals impose constraints upon the evolution of enzymatic activity.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5790, doi. 10.1093/nar/gku240

By:

Falanga, Alessia;
Stojanović, Ozren;
Kiffer-Moreira, Tina;
Pinto, Sofia;
Millán, José Luis;
Vlahoviček, Kristian;
Baralle, Marco

Publication type:

Article

A dynamic interplay of nucleosome and Msn2 binding regulates kinetics of gene activation and repression following stress.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5468, doi. 10.1093/nar/gku176

By:

Elfving, Nils;
Chereji, Răzvan V.;
Bharatula, Vasudha;
Björklund, Stefan;
Morozov, Alexandre V.;
Broach, James R.

Publication type:

Article

Internally labeled Cy3/Cy5 DNA constructs show greatly enhanced photo-stability in single-molecule FRET experiments.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5967, doi. 10.1093/nar/gku199

By:

Lee, Wonbae;
von Hippel, Peter H.;
Marcus, Andrew H.

Publication type:

Article

Different gene-specific mechanisms determine the ‘revised-response’ memory transcription patterns of a subset of A. thaliana dehydration stress responding genes.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5556, doi. 10.1093/nar/gku220

By:

Liu, Ning;
Ding, Yong;
Fromm, Michael;
Avramova, Zoya

Publication type:

Article

Similarity in targets with REST points to neural and glioblastoma related miRNAs.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5436, doi. 10.1093/nar/gku231

By:

Gebhardt, Marie L.;
Reuter, Stefanie;
Mrowka, Ralf;
Andrade-Navarro, Miguel A.

Publication type:

Article

Distinct Z-DNA binding mode of a PKR-like protein kinase containing a Z-DNA binding domain (PKZ).

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5937, doi. 10.1093/nar/gku189

By:

Kim, Doyoun;
Hur, Jeonghwan;
Park, Kwangsoo;
Bae, Sangsu;
Shin, Donghyuk;
Ha, Sung Chul;
Hwang, Hye-Yeon;
Hohng, Sungchul;
Lee, Joon-Hwa;
Lee, Sangho;
Kim, Yang-Gyun;
Kim, Kyeong Kyu

Publication type:

Article

Recombination hotspots attenuate the coupled ATPase and translocase activities of an AddAB-type helicase–nuclease.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5633, doi. 10.1093/nar/gku188

By:

Gilhooly, Neville S.;
Dillingham, Mark S.

Publication type:

Article

Human MUS81-EME2 can cleave a variety of DNA structures including intact Holliday junction and nicked duplex.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5846, doi. 10.1093/nar/gku237

By:

Amangyeld, Tamir;
Shin, Yong-Keol;
Lee, Miju;
Kwon, Buki;
Seo, Yeon-Soo

Publication type:

Article

Boronic acid-mediated polymerase chain reaction for gene- and fragment-specific detection of 5-hydroxymethylcytosine.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. e81, doi. 10.1093/nar/gku216

By:

Zhao, Chao;
Wang, Hailin;
Zhao, Bailin;
Li, Cuiping;
Yin, Ruichuan;
Song, Maoyong;
Liu, Baodong;
Liu, Zhen;
Jiang, Guibin

Publication type:

Article

A novel mechanism for regulating the activity of proliferating cell nuclear antigen by a small protein.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5776, doi. 10.1093/nar/gku239

By:

Li, Zhuo;
Huang, Richard Y.-C.;
Yopp, Daniel C.;
Hileman, Travis H.;
Santangelo, Thomas J.;
Hurwitz, Jerard;
Hudgens, Jeffrey W.;
Kelman, Zvi

Publication type:

Article

The histone chaperones Vps75 and Nap1 form ring-like, tetrameric structures in solution.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 6038, doi. 10.1093/nar/gku232

By:

Bowman, Andrew;
Hammond, Colin M.;
Stirling, Andrew;
Ward, Richard;
Shang, Weifeng;
El-Mkami, Hassane;
Robinson, David A.;
Svergun, Dmitri I.;
Norman, David G.;
Owen-Hughes, Tom

Publication type:

Article

A bifunctional protein regulates mitochondrial protein synthesis.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5483, doi. 10.1093/nar/gku179

By:

Richman, Tara R.;
Davies, Stefan M.K.;
Shearwood, Anne-Marie J.;
Ermer, Judith A.;
Scott, Louis H.;
Hibbs, Moira E.;
Rackham, Oliver;
Filipovska, Aleksandra

Publication type:

Article

AMPK regulates histone H2B O-GlcNAcylation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5594, doi. 10.1093/nar/gku236

By:

Xu, Qiuran;
Yang, Caihong;
Du, Yu;
Chen, Yali;
Liu, Hailong;
Deng, Min;
Zhang, Haoxing;
Zhang, Lei;
Liu, Tongzheng;
Liu, Qingguang;
Wang, Liewei;
Lou, Zhenkun;
Pei, Huadong

Publication type:

Article

The use of interatomic contact areas to quantify discrepancies between RNA 3D models and reference structures.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5407

By:

Olechnovič, Kliment;
Venclovas, Česlovas

Publication type:

Article

A eukaryotic-like 3′ untranslated region in Salmonella enterica hilD mRNA.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5894, doi. 10.1093/nar/gku222

By:

López-Garrido, Javier;
Puerta-Fernández, Elena;
Casadesús, Josep

Publication type:

Article

Crystal structure of the 5hmC specific endonuclease PvuRts1I.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5929, doi. 10.1093/nar/gku186

By:

Kazrani, Asgar Abbas;
Kowalska, Monika;
Czapinska, Honorata;
Bochtler, Matthias

Publication type:

Article

Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5715, doi. 10.1093/nar/gku194

By:

Guglielmini, Julien;
Néron, Bertrand;
Abby, Sophie S.;
Garcillán-Barcia, María Pilar;
la Cruz, Fernando de;
Rocha, Eduardo P. C.

Publication type:

Article

HSCARG, a novel regulator of H2A ubiquitination by downregulating PRC1 ubiquitin E3 ligase activity, is essential for cell proliferation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5582, doi. 10.1093/nar/gku230

By:

Hu, Bin;
Li, Shangze;
Zhang, Xiaodong;
Zheng, Xiaofeng

Publication type:

Article

Structural insights into RNA encapsidation and helical assembly of the Toscana virus nucleoprotein.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 6025, doi. 10.1093/nar/gku229

By:

Olal, Daniel;
Dick, Alexej;
Woods, Virgil L.;
Liu, Tong;
Li, Sheng;
Devignot, Stephanie;
Weber, Friedemann;
Saphire, Erica Ollmann;
Daumke, Oliver

Publication type:

Article

Identification of novel non-canonical RNA-binding sites in Gemin5 involved in internal initiation of translation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5742, doi. 10.1093/nar/gku177

By:

Fernandez-Chamorro, Javier;
Piñeiro, David;
Gordon, James M. B.;
Ramajo, Jorge;
Francisco-Velilla, Rosario;
Macias, Maria J.;
Martinez-Salas, Encarnación

Publication type:

Article

Pervasive generation of oppositely oriented spacers during CRISPR adaptation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5907, doi. 10.1093/nar/gku226

By:

Shmakov, Sergey;
Savitskaya, Ekaterina;
Semenova, Ekaterina;
Logacheva, Maria D.;
Datsenko, Kirill A.;
Severinov, Konstantin

Publication type:

Article

RepARK—de novo creation of repeat libraries from whole-genome NGS reads.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. e80, doi. 10.1093/nar/gku210

By:

Koch, Philipp;
Platzer, Matthias;
Downie, Bryan R.

Publication type:

Article

Dissecting the chemical interactions and substrate structural signatures governing RNA polymerase II trigger loop closure by synthetic nucleic acid analogues.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5863, doi. 10.1093/nar/gku238

By:

Xu, Liang;
Butler, Kyle Vincent;
Chong, Jenny;
Wengel, Jesper;
Kool, Eric T.;
Wang, Dong

Publication type:

Article

Nucleic Acids Research: Editorial Board.

Published in:: Nucleic Acids Research, 2014, v. 42, n. 9, p. ii, doi. 10.1093/nar/gku482
Publication type:: Article

Impact of sequencing depth in ChIP-seq experiments.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. e74, doi. 10.1093/nar/gku178

By:

Jung, Youngsook L.;
Luquette, Lovelace J.;
Ho, Joshua W.K.;
Ferrari, Francesco;
Tolstorukov, Michael;
Minoda, Aki;
Issner, Robbyn;
Epstein, Charles B.;
Karpen, Gary H.;
Kuroda, Mitzi I.;
Park, Peter J.

Publication type:

Article

Modulating TRAP-mediated transcription termination by AT during transcription of the leader region of the Bacillus subtilis trp operon.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5543, doi. 10.1093/nar/gku211

By:

Sharma, Shraddha;
Gollnick, Paul

Publication type:

Article