Works matching DE "GENETIC transcription regulation"

Results: 3610

Oxidative Stress Leads to Fur‐Mediated Activation of ftnA in Escherichia coli Independently of OxyR/SoxRs Regulators.

Published in:

Journal of Basic Microbiology, 2025, v. 65, n. 8, p. 1, doi. 10.1002/jobm.70038

By:

Matveeva, Valeriia Olegovna;
Grebennikova, Anna Dmitrievna;
Sakharov, Daniil Igorevich;
Fomin, Vadim Valerevich;
Manukhov, Ilya Vladimirovich;
Bazhenov, Sergey Vladimirovich

Publication type:

Article

ZNF385B as a potential prognostic and immunotherapy biomarker in ovarian cancer: insights from pan-cancer analysis.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-03188-6

By:

Yu, Hang;
Cheng, Wei;
Huang, Aoshuang;
Feng, Jing;
Zi, Dan

Publication type:

Article

Interplay between innate-like T-cells and microRNAs in cancer immunity.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-03234-3

By:

Yousefi, Mohammad Javad;
Afshar, Yashmin;
Amoozadehsamakoosh, Amirmohammad;
Naseri, Alma;
Soltani, Fereshteh;
Yazdanpanah, Niloufar;
Saleki, Kiarash;
Rezaei, Nima

Publication type:

Article

Cell type differences in human cytomegalovirus transcription and epigenetic regulation with insights into major immediate-early enhancer-promoter control.

Published in:

PLoS Pathogens, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.ppat.1013374

By:

Hu, Qiaolin;
Li, Ming;
Parida, Mrutyunjaya;
Spector, Benjamin M.;
Santana, Juan F.;
Zandvakili, Arya;
Price, David H.;
Meier, Jeffery L.

Publication type:

Article

Flo5-1 and Nrg1 are involved in reversible pH-dependent flocculation in Komagataella phaffii.

Published in:

Applied Microbiology & Biotechnology, 2025, v. 109, n. 1, p. 1, doi. 10.1007/s00253-025-13562-7

By:

De, Sonakshi;
Stadlmayr, Gerhard;
Rebnegger, Corinna;
Mattanovich, Diethard;
Gasser, Brigitte

Publication type:

Article

Effects of exogenous sucrose on root nitrogen uptake in apple at sub-low root-zone temperature.

Published in:

Chemical & Biological Technologies in Agriculture, 2025, v. 12, n. 1, p. 1, doi. 10.1186/s40538-025-00819-6

By:

Zhao, Xiaoping;
Liu, Hanyu;
Li, Lijie;
Lyu, Deguo

Publication type:

Article

HCF-1 as a key modulator of OGT function and O-GlcNAcylation in the liver.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-11813-1

By:

Kapuria, Vaibhav;
Ayushma;
Herr, Winship;
Minocha, Shilpi

Publication type:

Article

Unveiling tissue-specific transcriptional adaptations in iPSC-derived fibroblasts via co-culture systems.

Published in:

Stem Cell Research & Therapy, 2025, v. 16, n. 1, p. 1, doi. 10.1186/s13287-025-04537-6

By:

Azad, Amar J.;
Bentivogli, Alessandro;
Germar, Henrike;
Wörz, Dana;
Lizunova, Elena;
Cumberland, Max J.;
Weiner, January;
Hedtrich, Sarah

Publication type:

Article

Repression via DNA looping by the Gram-positive global transcriptional regulator ScoC from Geobacillus.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-08555-1

By:

Shulami, Smadar;
Hadad, Noam;
Ghrayeb, Mnar;
Pomyalov, Sergei;
Pazy, Yael;
Chai, Liraz;
Shoham, Yuval;
Shoham, Gil

Publication type:

Article

The SOX11:SMARCA4 complex is a driver of oncogenic transcriptional programs in mantle cell lymphoma.

Published in:

Blood Cancer Journal, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41408-025-01333-6

By:

De Bolòs, Anna;
Carreras-Caballé, Maria;
Sureda-Gómez, Marta;
Rodríguez, Marta-Leonor;
Charalampopoulou, Stella;
Albero, Robert;
Maiques-Diaz, Alba;
Playa-Albinyana, Heribert;
Clot, Guillem;
López, Cristina;
Colomer, Dolors;
Martin-Subero, José I;
Campo, Elías;
Reverter, David;
Villanueva, Josep;
Amador, Virginia

Publication type:

Article

Coordinated synthesis of aromatic amino acid derived pigments in yeast via global transcriptional engineering.

Published in:

Microbial Cell Factories, 2025, v. 24, n. 1, p. 1, doi. 10.1186/s12934-025-02799-6

By:

Xue, Huimin;
Li, Mingshan;
Cui, Yuhui;
Tian, Dongkui;
Liu, Duo;
Wang, Hanjie

Publication type:

Article

Hes1 in malignant tumors: from molecular mechanism to therapeutic potential.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1585624

By:

Zhang, Liping;
Zhang, Qian;
Guo, Cheng;
Ru, Zixin;
Yang, Zetian;
Geng, Yi;
Yang, Junjie;
Zhang, Daigui;
Yang, Zhenhuai;
Huang, Shuicai

Publication type:

Article

The 60th anniversary of the discovery of DNA secondary structure.

Published in:

Vojnosanitetski Pregled: Military Medical & Pharmaceutical Journal of Serbia, 2013, v. 70, n. 12, p. 1165

By:

Brajušković, Goran;
Pavićević, Dušanka Savić;
Romac, Stanka

Publication type:

Article

MicroRNA 223 Enhances ABCA1 Protein Stability and Supports Efflux in Cholesterol-Burdened Macrophages.

Published in:

Cell Biochemistry & Biophysics, 2025, v. 83, n. 2, p. 1943, doi. 10.1007/s12013-024-01603-3

By:

Syed, Rafay;
Rengasamy, Palanivel;
Rajagopalan, Sanjay;
Deiuliis, Jeffrey A.;
Maiseyeu, Andrei

Publication type:

Article

Glycolytic enzymes in non-glycolytic web: functional analysis of the key players.

Published in:

Cell Biochemistry & Biophysics, 2024, v. 82, n. 2, p. 351, doi. 10.1007/s12013-023-01213-5

By:

Malla, Avirup;
Gupta, Suvroma;
Sur, Runa

Publication type:

Article

The different facets of heme-oxygenase 1 in innate and adaptive immunity.

Published in:

Cell Biochemistry & Biophysics, 2022, v. 80, n. 4, p. 609, doi. 10.1007/s12013-022-01087-z

By:

Silva, Rafael Cardoso Maciel Costa;
Vasconcelos, Luiz Ricardo;
Travassos, Leonardo Holanda

Publication type:

Article

Correction: Heme Oxygenase 1 in Vertebrates: Friend and Foe.

Published in:

2022

By:

Costa Silva, Rafael Cardoso Maciel;
Correa, Leonardo Holanda Travassos

Publication type:

Correction Notice

Diet-responsive transcriptional regulation of insulin in a single neuron controls systemic metabolism.

Published in:

PLoS Biology, 2022, v. 20, n. 5, p. 1, doi. 10.1371/journal.pbio.3001655

By:

Handley, Ava;
Wu, Qiuli;
Sherry, Tessa;
Cornell, Rebecca;
Pocock, Roger

Publication type:

Article

Interaction between m6A and ncRNAs and Its Association with Diseases.

Published in:

Cytogenetic & Genome Research, 2022, v. 162, n. 4, p. 171, doi. 10.1159/000526035

By:

Chen, Shuangyi;
Dong, Jianxiang;
Luo, Xinjie;
Nie, Zixiong;
Lu, Shanshan;
Liu, Hanqi;
Liu, Junwen

Publication type:

Article

AdpA<sub>lin</sub> regulates lincomycin and melanin biosynthesis by modulating precursors flux in Streptomyces lincolnensis.

Published in:

Journal of Basic Microbiology, 2023, v. 63, n. 6, p. 622, doi. 10.1002/jobm.202200692

By:

Kang, Yajing;
Wu, Wei;
Zhang, Feixue;
Chen, Lei;
Wang, Ruida;
Ye, Jiang;
Wu, Haizhen;
Zhang, Huizhan

Publication type:

Article

A functional study of the global transcriptional regulator PadR from a strain Streptomyces fradiae‐nitR+bld, resistant to nitrone‐oligomycin.

Published in:

Journal of Basic Microbiology, 2018, v. 58, n. 9, p. 739, doi. 10.1002/jobm.201800095

By:

Vatlin, Aleksey A.;
Bekker, Olga B.;
Lysenkova, Ludmila N.;
Shchekotikhin, Andrey E.;
Danilenko, Valery N.

Publication type:

Article

Identification of miR-379/miR-656 (C14MC) cluster downregulation and associated epigenetic and transcription regulatory mechanism in oligodendrogliomas.

Published in:

Journal of Neuro-Oncology, 2018, v. 139, n. 1, p. 23, doi. 10.1007/s11060-018-2840-6

By:

Kumar, Anupam;
Nayak, Subhashree;
Pathak, Pankaj;
Purkait, Suvendu;
Malgulawar, Prit Benny;
Sharma, Mehar Chand;
Suri, Vaishali;
Mukhopadhyay, Arijit;
Suri, Ashish;
Sarkar, Chitra

Publication type:

Article

Solution structure of the HMG-box domain in the SSRP1 subunit of FACT.

Published in:

Journal of Biomolecular NMR, 2005, v. 32, n. 1, p. 83, doi. 10.1007/s10858-005-3662-3

By:

Kasai, Nobuyuki;
Tsunaka, Yasuo;
Ohki, Izuru;
Hirose, Susumu;
Morikawa, Kosuke;
Tate, Shin-ichi

Publication type:

Article

Transcriptional Control of Complement Activation in an Exercise Model of Chronic Fatigue Syndrome.

Published in:

Molecular Medicine, 2009, v. 15, n. 1/2, p. 34, doi. 10.2119/molmed.2008.00098

By:

Sorensen, Bristol;
Jones, James F.;
Vernon, Suzanne D.;
Rajeevan, Mangalathu S.

Publication type:

Article

Genomic distribution and polymorphism of G-quadruplex motifs occupying ovine promoters and enhancers.

Published in:

Mammalian Genome, 2023, v. 34, n. 3, p. 473, doi. 10.1007/s00335-023-09988-x

By:

Stefos, Georgios C.;
Theodorou, Georgios;
Politis, Ioannis

Publication type:

Article

Identification of transcription regulatory relationships in rheumatoid arthritis and osteoarthritis.

Published in:

Clinical Rheumatology, 2013, v. 32, n. 5, p. 609, doi. 10.1007/s10067-012-2143-9

By:

Li, Guofeng;
Han, Ning;
Li, Zengchun;
Lu, Qingyou

Publication type:

Article

Roles of NOLC1 in cancers and viral infection.

Published in:

Journal of Cancer Research & Clinical Oncology, 2023, v. 149, n. 12, p. 10593, doi. 10.1007/s00432-023-04934-5

By:

Zhai, Fengguang;
Wang, Jie;
Luo, Xia;
Ye, Meng;
Jin, Xiaofeng

Publication type:

Article

Role of ANO1 in tumors and tumor immunity.

Published in:

Journal of Cancer Research & Clinical Oncology, 2022, v. 148, n. 8, p. 2045, doi. 10.1007/s00432-022-04004-2

By:

Li, Haini;
Yu, Zongxue;
Wang, Haiyan;
Wang, Ning;
Sun, Xueguo;
Yang, Shengmei;
Hua, Xu;
Liu, Zongtao

Publication type:

Article

A Novel Cognition of Decitabine: Insights into Immunomodulation and Antiviral Effects.

Published in:

Molecules, 2022, v. 27, n. 6, p. 1973, doi. 10.3390/molecules27061973

By:

Xiao, Ji;
Liu, Ping;
Wang, Yiliang;
Zhu, Yexuan;
Zeng, Qiongzhen;
Hu, Xiao;
Ren, Zhe;
Wang, Yifei

Publication type:

Article

HDAC Inhibitors: Innovative Strategies for Their Design and Applications.

Published in:

Molecules, 2022, v. 27, n. 3, p. 715, doi. 10.3390/molecules27030715

By:

Daśko, Mateusz;
de Pascual-Teresa, Beatriz;
Ortín, Irene;
Ramos, Ana

Publication type:

Article

Glycosides for Peripheral Neuropathic Pain: A Potential Medicinal Components.

Published in:

Molecules, 2022, v. 27, n. 1, p. 255, doi. 10.3390/molecules27010255

By:

Tian, Miao-Miao;
Li, Yu-Xiang;
Liu, Shan;
Zhu, Chun-Hao;
Lan, Xiao-Bing;
Du, Juan;
Ma, Lin;
Yang, Jia-Mei;
Zheng, Ping;
Yu, Jian-Qiang;
Liu, Ning

Publication type:

Article

Sox4 Up-Regulates Cyr61 Expression in Colon Cancer Cells.

Published in:

Cellular Physiology & Biochemistry (Karger AG), 2014, v. 34, n. 2, p. 405, doi. 10.1159/000363009

By:

Wu, Gang;
Zhu, Yuan-Zeng;
Zhang, Jian-Cheng

Publication type:

Article

MicroRNA-127 Post-Transcriptionally Downregulates Sept7 and Suppresses Cell Growth in Hepatocellular Carcinoma Cells.

Published in:

Cellular Physiology & Biochemistry (Karger AG), 2014, v. 33, n. 5, p. 1537, doi. 10.1159/000358717

By:

Zhou, Jiansheng;
Lu, Shan;
Yang, Shengsheng;
Chen, Huan;
Shi, Hanping;
Miao, Mingyong;
Jiao, Binghua

Publication type:

Article

Dynamic Coregulatory Complex Containing BRCA1, E2F1 and CtIP Controls ATM Transcription.

Published in:

Cellular Physiology & Biochemistry (Karger AG), 2012, v. 30, n. 3, p. 596, doi. 10.1159/000341441

By:

Moiola, Cristian;
De Luca, Paola;
Cotignola, Javier;
Gardner, Kevin;
Vazquez, Elba;
De Siervi, Adriana

Publication type:

Article

Transcriptional Regulation of the Claudin-16 Gene by MgAvailability.

Published in:

Cellular Physiology & Biochemistry (Karger AG), 2010, v. 25, n. 6, p. 705, doi. 10.1159/000315090

By:

Efrati, Edna;
Hirsch, Ayal;
Kladnitsky, Orly;
Rozenfeld, Julia;
Kaplan, Marielle;
Zinder, Oren;
Zelikovic, Israel

Publication type:

Article

Induction of IFN-γ gene Expression by Thioredoxin: Positive Feed-Back Regulation of Th1 Response by Thioredoxin and IFN-γ.

Published in:

Cellular Physiology & Biochemistry (Karger AG), 2008, v. 21, n. 1-3, p. 215, doi. 10.1159/000113763

By:

Myoung-Wha Kang;
Ji-Young Jang;
Ja-Young Choi;
Seol-Hee Kim;
Jiyoung Oh;
Byoung-Soo Cho;
Choong-Eun Lee

Publication type:

Article

The Effects of Atoh8 on Postnatal Murine Neurogenesis.

Published in:

Cells Tissues Organs, 2025, v. 214, n. 2, p. 96, doi. 10.1159/000540440

By:

Culhalik, Dilek;
Gellisch, Morris;
Morosan-Puopolo, Gabriela;
Saberi, Darius

Publication type:

Article

SpaceX: gene co-expression network estimation for spatial transcriptomics.

Published in:

Bioinformatics, 2022, v. 38, n. 22, p. 5033, doi. 10.1093/bioinformatics/btac645

By:

Acharyya, Satwik;
Zhou, Xiang;
Baladandayuthapani, Veerabhadran

Publication type:

Article

Prediction of gene co-expression from chromatin contacts with graph attention network.

Published in:

Bioinformatics, 2022, v. 38, n. 19, p. 4457, doi. 10.1093/bioinformatics/btac535

By:

Zhang, Ke;
Wang, Chenxi;
Sun, Liping;
Zheng, Jie

Publication type:

Article

CLIPreg: constructing translational regulatory networks from CLIP-, Ribo- and RNA-seq.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3651, doi. 10.1093/bioinformatics/btac363

By:

Kerouanton, Baptiste;
Schäfer, Sebastian;
Ho, Lena;
Chothani, Sonia;
Rackham, Owen J L

Publication type:

Article

Fast and accurate inference of gene regulatory networks through robust precision matrix estimation.

Published in:

Bioinformatics, 2022, v. 38, n. 10, p. 2802, doi. 10.1093/bioinformatics/btac178

By:

Passemiers, Antoine;
Moreau, Yves;
Raimondi, Daniele

Publication type:

Article

Hierarchical Bayesian models of transcriptional and translational regulation processes with delays.

Published in:

Bioinformatics, 2022, v. 38, n. 1, p. 187, doi. 10.1093/bioinformatics/btab618

By:

Cortez, Mark Jayson;
Hong, Hyukpyo;
Choi, Boseung;
Kim, Jae Kyoung;
Josić, Krešimir

Publication type:

Article

CCIP: predicting CTCF-mediated chromatin loops with transitivity.

Published in:

Bioinformatics, 2021, v. 37, n. 24, p. 4635, doi. 10.1093/bioinformatics/btab534

By:

Wang, Weibing;
Gao, Lin;
Ye, Yusen;
Gao, Yong

Publication type:

Article

TRFBA: an algorithm to integrate genome-scale metabolic and transcriptional regulatory networks with incorporation of expression data.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1057, doi. 10.1093/bioinformatics/btw772

By:

Motamedian, Ehsan;
Mohammadi, Maryam;
Shojaosadati, Seyed Abbas;
Heydari, Mona

Publication type:

Article

BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3758, doi. 10.1093/bioinformatics/btv466

By:

De Witte, Dieter;
Van de Velde, Jan;
Decap, Dries;
Van Bel, Michiel;
Audenaert, Pieter;
Demeester, Piet;
Dhoedt, Bart;
Vandepoele, Klaas;
Fostier, Jan

Publication type:

Article

INSPEcT: a computational tool to infer mRNA synthesis, processing and degradation dynamics from RNA- and 4sU-seq time course experiments.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2829, doi. 10.1093/bioinformatics/btv288

By:

de Pretis, Stefano;
Kress, Theresia;
Morelli, Marco J.;
Melloni, Giorgio E. M.;
Riva, Laura;
Amati, Bruno;
Pelizzola, Mattia

Publication type:

Article

Modeling time-dependent transcription effects of HER2 oncogene and discovery of a role for E2F2 in breast cancer cell-matrix adhesion.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3036, doi. 10.1093/bioinformatics/btu400

By:

Bollig-Fischer, Aliccia;
Marchetti, Luca;
Mitrea, Cristina;
Wu, Jiusheng;
Kruger, Adéle;
Manca, Vincenzo;
Drăghici, Sorin

Publication type:

Article

Estimating the activity of transcription factors by the effect on their target genes.

Published in:

2014

By:

Schacht, Theresa;
Oswald, Marcus;
Eils, Roland;
Eichmüller, Stefan B.;
König, Rainer

Publication type:

Case Study

MIRA: mutual information-based reporter algorithm for metabolic networks.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i175, doi. 10.1093/bioinformatics/btu290

By:

Cicek, A. Ercument;
Roeder, Kathryn;
Ozsoyoglu, Gultekin

Publication type:

Article

TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2292, doi. 10.1093/bioinformatics/btt381

By:

Nariai, Naoki;
Hirose, Osamu;
Kojima, Kaname;
Nagasaki, Masao

Publication type:

Article