Works matching AU Lengauer, Thomas

Results: 160

Pathway analysis in metabolic databases via differential metabolic display (DMD).

Published in:

Bioinformatics, 2000, v. 16, n. 9, p. 825, doi. 10.1093/bioinformatics/16.9.825

By:

Küffner, Robert;
Zimmer, Ralf;
Lengauer, Thomas

Publication type:

Article

Decision tree-based formation of consensus protein secondary structure prediction.

Published in:

Bioinformatics, 1999, v. 15, n. 12, p. 1039, doi. 10.1093/bioinformatics/15.12.1039

By:

Selbig, Joachim;
Mevissen, Theo;
Lengauer, Thomas

Publication type:

Article

ProML - The Protein Markup Language for Specification of Protein Sequences, Structures and Families.

Published in:

In Silico Biology, 2002, v. 2, n. 3, p. 313

By:

Hanisch, Daniel;
Zimmer, Ralf;
Lengauer, Thomas

Publication type:

Article

Improving Fold Recognition of Protein Threading by Experimental Distance Constraints.

Published in:

In Silico Biology, 2002, v. 2, n. 3, p. 325

By:

Albrecht, Mario;
Hanisch, Daniel;
Zimmer, Ralf;
Lengauer, Thomas

Publication type:

Article

A Hypergraph-Based Method for Unification of Existing Protein Structure- and Sequence-Families.

Published in:

In Silico Biology, 2002, v. 2, n. 3, p. 339

By:

Freudenberg, Jan;
Zimmer, Ralf;
Hanisch, Daniel;
Lengauer, Thomas

Publication type:

Article

AltAnalyze and DomainGraph: analyzing and visualizing exon expression data.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W755, doi. 10.1093/nar/gkq405

By:

Emig, Dorothea;
Salomonis, Nathan;
Baumbach, Jan;
Lengauer, Thomas;
Conklin, Bruce R.;
Albrecht, Mario

Publication type:

Article

Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 10, p. e55, doi. 10.1093/nar/gkn122

By:

Bock, Christoph;
Walter, Jörn;
Paulsen, Martina;
Lengauer, Thomas

Publication type:

Article

Mutations in the MutSα interaction interface of MLH1 can abolish DNA mismatch repair.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 22, p. 6574, doi. 10.1093/nar/gkl944

By:

Plotz, Guido;
Welsch, Christoph;
Giron-Monzon, Luis;
Friedhoff, Peter;
Albrecht, Mario;
Piiper, Albrecht;
Biondi, Ricardo M.;
Lengauer, Thomas;
Zeuzem, Stefan;
Raedle, Jochen

Publication type:

Article

Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3850, doi. 10.1093/nar/gkg575

By:

Beerenwinkel, Niko;
Däumer, Martin;
Oette, Mark;
Korn, Klaus;
Hoffmann, Daniel;
Kaiser, Rolf;
Lengauer, Thomas;
Selbig, Joachim;
Walter, Hauke

Publication type:

Article

The nesting problem in the leather manufacturing industry.

Published in:

Annals of Operations Research, 1995, v. 57, n. 1-4, p. 147, doi. 10.1007/BF02099695

By:

Heistermann, Jörg;
Lengauer, Thomas

Publication type:

Article

A simulated annealing approach to the nesting problem in the textile manufacturing industry.

Published in:

Annals of Operations Research, 1995, v. 57, n. 1-4, p. 103, doi. 10.1007/BF02099693

By:

Heckmann, Ralf;
Lengauer, Thomas

Publication type:

Article

EpiExplorer: live exploration and global analysis of large epigenomic datasets.

Published in:

Genome Biology, 2012, v. 13, n. 10, p. R96, doi. 10.1186/gb-2012-13-10-r96

By:

Halachev, Konstantin;
Bast, Hannah;
Albrecht, Felipe;
Lengauer, Thomas;
Bock, Christoph

Publication type:

Article

Reference-free deconvolution, visualization and interpretation of complex DNA methylation data using DecompPipeline, MeDeCom and FactorViz.

Published in:

Nature Protocols, 2020, v. 15, n. 10, p. 3240, doi. 10.1038/s41596-020-0369-6

By:

Scherer, Michael;
Nazarov, Petr V.;
Toth, Reka;
Sahay, Shashwat;
Kaoma, Tony;
Maurer, Valentin;
Vedeneev, Nikita;
Plass, Christoph;
Lengauer, Thomas;
Walter, Jörn;
Lutsik, Pavlo

Publication type:

Article

Automated clustering of ensembles of alternative models in protein structure databases.

Published in:

PEDS: Protein Engineering, Design & Selection, 2004, v. 17, n. 6, p. 537

By:

Francisco S. Domingues;
Thomas Lengauer

Publication type:

Article

Respiratory viruses dynamics and interactions: ten years of surveillance in central Europe.

Published in:

2022

By:

Horemheb-Rubio, Gibran;
Eggeling, Ralf;
Schmeiβer, Norbert;
Pfeifer, Nico;
Lengauer, Thomas;
Gärtner, Barbara C.;
Prifert, Christiane;
Kochanek, Matthias;
Scheid, Christoph;
Adams, Ortwin;
Kaiser, Rolf;
Respiratory Virus Network;
C. Gärtner, Barbara;
Weissbrich, Benedikt;
Berger, Annemarie;
Palupsky, Katrin;
Huzly, Daniela;
Tiemann, Carsten;
Borena, Wegene;
Lindauer, Andreas

Publication type:

journal article

Genotypic tropism testing by massively parallel sequencing: qualitative and quantitative analysis.

Published in:

2011

By:

Däumer, Martin;
Kaiser, Rolf;
Klein, Rolf;
Lengauer, Thomas;
Thiele, Bernhard;
Thielen, Alexander

Publication type:

journal article

Genotypic tropism testing by massively parallel sequencing: qualitative and quantitative analysis.

Published in:

BMC Medical Informatics & Decision Making, 2011, v. 11, n. 1, p. 30, doi. 10.1186/1472-6947-11-30

By:

Däumer, Martin;
Kaiser, Rolf;
Klein, Rolf;
Lengauer, Thomas;
Thiele, Bernhard;
Thielen, Alexander

Publication type:

Article

Dissection of the Inflammatory Bowel Disease Transcriptome Using Genome-Wide cDNA Microarrays.

Published in:

PLoS Medicine, 2005, v. 2, n. 8, p. 771, doi. 10.1371/journal.pmed.0020199

By:

Costello, Christine M.;
Mah, Nancy;
Häsler, Robert;
Rosenstiel, Philip;
Waetzig, Georg H.;
Hahn, Andreas;
Lu, Tim;
Gurbuz, Yesim;
Nikolaus, Susanna;
Albrecht, Mario;
Hampe, Jochen;
Lucius, Ralph;
Klöppel, Günther;
Eickhoff, Holger;
Lehrach, Hans;
Lengauer, Thomas;
Schreiber, Stefan

Publication type:

Article

Endogenous or exogenous spreading of HIV-1 in Nordrhein-Westfalen, Germany, investigated by phylodynamic analysis of the RESINA Study cohort.

Published in:

Medical Microbiology & Immunology, 2012, v. 201, n. 3, p. 259, doi. 10.1007/s00430-011-0228-8

By:

Lawyer, Glenn;
Schülter, Eugen;
Kaiser, Rolf;
Reuter, Stefan;
Oette, Mark;
Lengauer, Thomas

Publication type:

Article

APOBEC3G/F as one possible driving force for co-receptor switch of the human immunodeficiency virus-1.

Published in:

Medical Microbiology & Immunology, 2012, v. 201, n. 1, p. 7, doi. 10.1007/s00430-011-0199-9

By:

Heger, Eva;
Thielen, Alexander;
Gilles, Ramona;
Obermeier, Martin;
Lengauer, Thomas;
Kaiser, Rolf;
Trapp, Susanna

Publication type:

Article

HIV prevalence and route of transmission in Turkish immigrants living in North-Rhine Westphalia, Germany.

Published in:

Medical Microbiology & Immunology, 2011, v. 200, n. 4, p. 219, doi. 10.1007/s00430-011-0193-2

By:

Schülter, Eugen;
Oette, Mark;
Balduin, Melanie;
Reuter, Stefan;
Rockstroh, Jürgen;
Fätkenheuer, Gerd;
Esser, Stefan;
Lengauer, Thomas;
Agacfidan, Ali;
Pfister, Herbert;
Kaiser, Rolf;
Akgül, Baki

Publication type:

Article

Prevalence and characteristics of hepatitis B and C virus infections in treatment-naïve HIV-infected patients.

Published in:

Medical Microbiology & Immunology, 2011, v. 200, n. 1, p. 39, doi. 10.1007/s00430-010-0172-z

By:

Reuter, Stefan;
Oette, Mark;
Wilhelm, Frank;
Beggel, Bastian;
Kaiser, Rolf;
Balduin, Melanie;
Schweitzer, Finja;
Verheyen, Jens;
Adams, Ortwin;
Lengauer, Thomas;
Fätkenheuer, Gerd;
Pfister, Herbert;
Häussinger, Dieter

Publication type:

Article

Erratum to: Prevalence and characteristics of hepatitis B and C virus infections in treatment-naïve HIV-infected patients.

Published in:

2011

By:

Reuter, Stefan;
Oette, Mark;
Wilhelm, Frank;
Beggel, Bastian;
Kaiser, Rolf;
Balduin, Melanie;
Schweitzer, Finja;
Verheyen, Jens;
Adams, Ortwin;
Lengauer, Thomas;
Fätkenheuer, Gerd;
Pfister, Herbert;
Häussinger, Dieter

Publication type:

Correction Notice

Evaluation of the F LEXX incremental construction algorithm for protein-ligand docking.

Published in:

Proteins, 1999, v. 37, n. 2, p. 228, doi. 10.1002/(SICI)1097-0134(19991101)37:2<228::AID-PROT8>3.0.CO;2-8

By:

Kramer, Bernd;
Rarey, Matthias;
Lengauer, Thomas

Publication type:

Article

The particle concept: placing discrete water molecules during protein-ligand docking predictions.

Published in:

Proteins, 1999, v. 34, n. 1, p. 17, doi. 10.1002/(SICI)1097-0134(19990101)34:1<17::AID-PROT3>3.0.CO;2-1

By:

Rarey, Matthias;
Kramer, Bernd;
Lengauer, Thomas

Publication type:

Article

CASP2 experiences with docking flexible ligands using F LEXX.

Published in:

Proteins, 1997, v. 29, n. S1, p. 221, doi. 10.1002/(SICI)1097-0134(1997)1+<221::AID-PROT30>3.0.CO;2-O

By:

Kramer, Bernd;
Rarey, Matthias;
Lengauer, Thomas

Publication type:

Article

Positive selection of HIV host factors and the evolution of lentivirus genes.

Published in:

BMC Evolutionary Biology, 2010, v. 10, p. 186, doi. 10.1186/1471-2148-10-186

By:

Bożek, Katarzyna;
Lengauer, Thomas

Publication type:

Article

Factor interaction analysis for chromosome 8 and DNA methylation alterations highlights innate immune response suppression and cytoskeletal changes in prostate cancer.

Published in:

Molecular Cancer, 2007, v. 6, p. 14, doi. 10.1186/1476-4598-6-14

By:

Schulz, Wolfgang A.;
Alexa, Adrian;
Jung, Volker;
Hader, Christiane;
Hoffmann, Michèle J.;
Yamanaka, Masanori;
Fritzsche, Sandy;
Wlazlinski, Agnes;
Müller, Mirko;
Lengauer, Thomas;
Engers, Rainer;
Florl, Andrea R.;
Wullich, Bernd;
Rahnenführer, Jörg

Publication type:

Article

How to Write a Presubmission Inquiry.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004098

By:

Lengauer, Thomas;
Nussinov, Ruth

Publication type:

Article

ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004087

By:

Karp, Peter D.;
Berger, Bonnie;
Kovats, Diane;
Lengauer, Thomas;
Linial, Michal;
Sabeti, Pardis;
Hide, Winston;
Rost, Burkhard

Publication type:

Article

Sensitive Detection of Viral Transcripts in Human Tumor Transcriptomes.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003228

By:

Schelhorn, Sven-Eric;
Fischer, Matthias;
Tolosi, Laura;
Altmüller, Janine;
Nürnberg, Peter;
Pfister, Herbert;
Lengauer, Thomas;
Berthold, Frank

Publication type:

Article

Analysis of Physicochemical and Structural Properties Determining HIV-1 Coreceptor Usage.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002977

By:

Bozek, Katarzyna;
Lengauer, Thomas;
Sierra, Saleta;
Kaiser, Rolf

Publication type:

Article

New Methods Section in PLOS Computational Biology.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002972

By:

Lengauer, Thomas;
Nussinov, Ruth

Publication type:

Article

Local Function Conservation in Sequence and Structure Space.

Published in:

PLoS Computational Biology, 2008, v. 4, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000105

By:

Weinhold, Nils;
Sander, Oliver;
Domingues, Francisco S.;
Lengauer, Thomas;
Sommer, Ingolf

Publication type:

Article

CpG Island Mapping by Epigenome Prediction.

Published in:

PLoS Computational Biology, 2007, v. 3, n. 6, p. e110, doi. 10.1371/journal.pcbi.0030110

By:

Bock, Christoph;
Walter, Jörn;
Paulsen, Martina;
Lengauer, Thomas

Publication type:

Article

ISMB/ECCB 2007: The Premier Conference on Computational Biology.

Published in:

2007

By:

Lengauer, Thomas;
McKay, B. J. Morrison;
Rost, Burkhard

Publication type:

Proceeding

Structural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage.

Published in:

PLoS Computational Biology, 2007, v. 3, n. 3, p. 0555, doi. 10.1371/journal.pcbi.0030058

By:

Sander, Oliver;
Sing, Tobias;
Sommer, Ingolf;
Low, Andrew J.;
Cheung, Peter K.;
Harrigan, P. Richard;
Lengauer, Thomas;
Domingues, Francisco S.

Publication type:

Article

Structural and functional analysis of a novel mutation of CYP21B in a heterozygote carrier of 21-hydroxylase deficiency.

Published in:

Human Genetics, 2005, v. 117, n. 6, p. 558, doi. 10.1007/s00439-005-1339-3

By:

Bojunga, Jörg;
Welsch, Christoph;
Antes, Iris;
Albrecht, Mario;
Lengauer, Thomas;
Zeuzem, Stefan

Publication type:

Article

Geno2pheno<sub>[HCV]</sub> – A Web-based Interpretation System to Support Hepatitis C Treatment Decisions in the Era of Direct-Acting Antiviral Agents.

Published in:

PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0155869

By:

Kalaghatgi, Prabhav;
Sikorski, Anna Maria;
Knops, Elena;
Rupp, Daniel;
Sierra, Saleta;
Heger, Eva;
Neumann-Fraune, Maria;
Beggel, Bastian;
Walker, Andreas;
Timm, Jörg;
Walter, Hauke;
Obermeier, Martin;
Kaiser, Rolf;
Bartenschlager, Ralf;
Lengauer, Thomas

Publication type:

Article

Torque Teno Virus Load Is Associated With Centers for Disease Control and Prevention Stage and CD4<sup>+</sup> Cell Count in People Living With Human Immunodeficiency Virus but Seems Unrelated to AIDS-Defining Events and Human Pegivirus Load.

Published in:

Journal of Infectious Diseases, 2024, v. 230, n. 2, p. e437, doi. 10.1093/infdis/jiae014

By:

Esser, Pia L;
Quintanares, Gibran H Rubio;
Langhans, Bettina;
Heger, Eva;
Böhm, Michael;
Jensen, Björn-Erik O L E;
Esser, Stefan;
Lübke, Nadine;
Fätkenheuer, Gerd;
Lengauer, Thomas;
Klein, Florian;
Oette, Mark;
Rockstroh, Juergen K;
Boesecke, Christoph;
Cristanziano, Veronica Di;
Kaiser, Rolf;
Pirkl, Martin

Publication type:

Article

A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1.

Published in:

Nature Genetics, 2007, v. 39, n. 2, p. 207, doi. 10.1038/ng1954

By:

Hampe, Jochen;
Franke, Andre;
Rosenstiel, Philip;
Till, Andreas;
Teuber, Markus;
Huse, Klaus;
Albrecht, Mario;
Mayr, Gabriele;
De La Vega, Francisco M.;
Briggs, Jason;
Günther, Simone;
Prescott, Natalie J.;
Onnie, Clive M.;
Häsler, Robert;
Sipos, Bence;
Fölsch, Ulrich R.;
Lengauer, Thomas;
Platzer, Matthias;
Mathew, Christopher G.;
Krawczak, Michael

Publication type:

Article

Sarcoidosis is associated with a truncating splice site mutation in BTNL2.

Published in:

Nature Genetics, 2005, v. 37, n. 4, p. 357, doi. 10.1038/ng1519

By:

Valentonyte, Ruta;
Hampe, Jochen;
Huse, Klaus;
Rosenstiel, Philip;
Albrecht, Mario;
Stenzel, Annette;
Nagy, Marion;
Gaede, Karoline I;
Franke, Andre;
Haesler, Robert;
Koch, Andreas;
Lengauer, Thomas;
Seegert, Dirk;
Reiling, Norbert;
Ehlers, Stefan;
Schwinger, Eberhard;
Platzer, Matthias;
Krawczak, Michael;
Müller-Quernheim, Joachim;
Schürmann, Manfred

Publication type:

Article

Genetic variation in DLG5 is associated with inflammatory bowel disease.

Published in:

Nature Genetics, 2004, v. 36, n. 5, p. 476, doi. 10.1038/ng1345

By:

Stoll, Monika;
Corneliussen, Brit;
Costello, Christine M;
Waetzig, Georg H;
Mellgard, Bjorn;
Koch, W Andreas;
Rosenstiel, Philip;
Albrecht, Mario;
Croucher, Peter J P;
Seegert, Dirk;
Nikolaus, Susanna;
Hampe, Jochen;
Lengauer, Thomas;
Pierrou, Stefan;
Foelsch, Ulrich R;
Mathew, Christopher G;
Lagerstrom-Fermer, Maria;
Schreiber, Stefan

Publication type:

Article

Corrigendum to: Family-joining: A fast distance-based method for constructing generally labeled trees.

Published in:

Molecular Biology & Evolution, 2020, v. 37, n. 6, p. 1845, doi. 10.1093/molbev/msz281

By:

Kalaghatgi, Prabhav;
Pfeifer, Nico;
Lengauer, Thomas

Publication type:

Article

Family-Joining: A Fast Distance-Based Method for Constructing Generally Labeled Trees.

Published in:

Molecular Biology & Evolution, 2016, v. 33, n. 10, p. 2720, doi. 10.1093/molbev/msw123

By:

Kalaghatgi, Prabhav;
Pfeifer, Nico;
Lengauer, Thomas

Publication type:

Article

Managing drug resistance in cancer: lessons from HIV therapy.

Published in:

Nature Reviews Cancer, 2012, v. 12, n. 7, p. 494, doi. 10.1038/nrc3297

By:

Bock, Christoph;
Lengauer, Thomas

Publication type:

Article

Integrative analysis of single-cell expression data reveals distinct regulatory states in bidirectional promoters.

Published in:

Epigenetics & Chromatin, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13072-018-0236-7

By:

Behjati Ardakani, Fatemeh;
Kattler, Kathrin;
Nordström, Karl;
Gasparoni, Nina;
Gasparoni, Gilles;
Fuchs, Sarah;
Sinha, Anupam;
Barann, Matthias;
Ebert, Peter;
Fischer, Jonas;
Hutter, Barbara;
Zipprich, Gideon;
Imbusch, Charles D.;
Felder, Bärbel;
Eils, Jürgen;
Brors, Benedikt;
Lengauer, Thomas;
Manke, Thomas;
Rosenstiel, Philip;
Walter, Jörn

Publication type:

Article

Epigenetic dynamics of monocyteto-macrophage differentiation.

Published in:

Epigenetics & Chromatin, 2016, v. 8, p. 1, doi. 10.1186/s13072-016-0079-z

By:

Wallner, Stefan;
Schröder, Christopher;
Leitão, Elsa;
Berulava, Tea;
Haak, Claudia;
Beiβer, Daniela;
Rahmann, Sven;
Richter, Andreas S.;
Manke, Thomas;
Bönisch, Ulrike;
Arrigoni, Laura;
Fröhler, Sebastian;
Klironomos, Filippos;
Wei Chen;
Rajewsky, Nikolaus;
Müller, Fabian;
Ebert, Peter;
Lengauer, Thomas;
Barann, Matthias;
Rosenstiel, Philip

Publication type:

Article

ISCB’s Initial Reaction to The New England Journal of Medicine Editorial on Data Sharing.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004816

By:

Berger, Bonnie;
Gaasterland, Terry;
Lengauer, Thomas;
Orengo, Christine;
Gaeta, Bruno;
Markel, Scott;
Valencia, Alfonso

Publication type:

Article

Hierarchical Bayes Model for Predicting Effectiveness of HIV Combination Therapies.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2012, v. 11, n. 3, p. 1, doi. 10.1515/1544-6115.1769

By:

Bogojeska, Jasmina;
Lengauer, Thomas

Publication type:

Article