Works matching IS 03051048 AND DT 2012 AND VI 40 AND IP 8

Results: 50

Expression optimization and synthetic gene networks in cell-free systems.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3763, doi. 10.1093/nar/gkr1191

By:

Karig, David K.;
Iyer, Sukanya;
Simpson, Michael L.;
Doktycz, Mitchel J.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 8, p. iii, doi. 10.1093/nar/gks134
Publication type:: Article

Topo IV is the topoisomerase that knots and unknots sister duplexes during DNA replication.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3563

By:

López, Virginia;
Martínez-Robles, María-Luisa;
Hernández, Pablo;
Krimer, Dora B.;
Schvartzman, Jorge B.

Publication type:

Article

Expression determinants of mammalian argonaute proteins in mediating gene silencing.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3704, doi. 10.1093/nar/gkr1274

By:

Valdmanis, Paul N.;
Gu, Shuo;
Schüermann, Nina;
Sethupathy, Praveen;
Grimm, Dirk;
Kay, Mark A.

Publication type:

Article

SLiCE: a novel bacterial cell extract-based DNA cloning method.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. e55, doi. 10.1093/nar/gkr1288

By:

Zhang, Yongwei;
Werling, Uwe;
Edelmann, Winfried

Publication type:

Article

Integration of DNA into bacterial chromosomes from plasmids without a counter-selection marker.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. e59, doi. 10.1093/nar/gkr1321

By:

Heap, John T.;
Ehsaan, Muhammad;
Cooksley, Clare M.;
Ng, Yen-Kuan;
Cartman, Stephen T.;
Winzer, Klaus;
Minton, Nigel P.

Publication type:

Article

Identification of CTCF as a master regulator of the clustered protocadherin genes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3378, doi. 10.1093/nar/gkr1260

By:

Golan-Mashiach, Michal;
Grunspan, Moshe;
Emmanuel, Rafi;
Gibbs-Bar, Liron;
Dikstein, Rivka;
Shapiro, Ehud

Publication type:

Article

A powerful test for multiple rare variants association studies that incorporates sequencing qualities.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. e60, doi. 10.1093/nar/gks024

By:

Daye, Z. John;
Li, Hongzhe;
Wei, Zhi

Publication type:

Article

Human immunodeficiency virus-1 Tat activates NF-κB via physical interaction with IκB-α and p65.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3548, doi. 10.1093/nar/gkr1224

By:

Fiume, Giuseppe;
Vecchio, Eleonora;
De Laurentiis, Annamaria;
Trimboli, Francesca;
Palmieri, Camillo;
Pisano, Antonio;
Falcone, Cristina;
Pontoriero, Marilena;
Rossi, Annalisa;
Scialdone, Annarita;
Fasanella Masci, Francesca;
Scala, Giuseppe;
Quinto, Ileana

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 8, p. ii, doi. 10.1093/nar/gks090
Publication type:: Article

A potent 2′-O-methylated RNA-based microRNA inhibitor with unique secondary structures.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. e58, doi. 10.1093/nar/gkr1317

By:

Haraguchi, Takeshi;
Nakano, Haruo;
Tagawa, Takanobu;
Ohki, Tokimitsu;
Ueno, Yoshihito;
Yoshida, Tetsuo;
Iba, Hideo

Publication type:

Article

Gli2 and MEF2C activate each other's expression and function synergistically during cardiomyogenesis in vitro.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3329, doi. 10.1093/nar/gkr1232

By:

Voronova, Anastassia;
Al Madhoun, Ashraf;
Fischer, Anna;
Shelton, Michael;
Karamboulas, Christina;
Skerjanc, Ilona Sylvia

Publication type:

Article

MicroRNA-1 is a candidate tumor suppressor and prognostic marker in human prostate cancer.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3689, doi. 10.1093/nar/gkr1222

By:

Hudson, Robert S.;
Yi, Ming;
Esposito, Dominic;
Watkins, Stephanie K.;
Hurwitz, Arthur A.;
Yfantis, Harris G.;
Lee, Dong H.;
Borin, James F.;
Naslund, Michael J.;
Alexander, Richard B.;
Dorsey, Tiffany H.;
Stephens, Robert M.;
Croce, Carlo M.;
Ambs, Stefan

Publication type:

Article

Normalized Affymetrix expression data are biased by G-quadruplex formation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3307, doi. 10.1093/nar/gkr1230

By:

Shanahan, Hugh P.;
Memon, Farhat N.;
Upton, Graham J. G.;
Harrison, Andrew P.

Publication type:

Article

Gene silencing H-NS paralogue StpA forms a rigid protein filament along DNA that blocks DNA accessibility.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3316, doi. 10.1093/nar/gkr1247

By:

Lim, Ci Ji;
Whang, Yixun R.;
Kenney, Linda J.;
Yan, Jie

Publication type:

Article

Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3524, doi. 10.1093/nar/gkr1236

By:

Prieto, Ana I.;
Kahramanoglou, Christina;
Ali, Ruhi M.;
Fraser, Gillian M.;
Seshasayee, Aswin S. N.;
Luscombe, Nicholas M.

Publication type:

Article

Analysis of alternative splicing of cassette exons at single-cell level using two fluorescent proteins.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. e57, doi. 10.1093/nar/gkr1314

By:

Gurskaya, Nadya G.;
Staroverov, Dmitry B.;
Zhang, Lijuan;
Fradkov, Arkady F.;
Markina, Nadezhda M.;
Pereverzev, Anton P.;
Lukyanov, Konstantin A.

Publication type:

Article

Sensitive and label-free biosensing of RNA with predicted secondary structures by a triplex affinity capture method.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. e56, doi. 10.1093/nar/gkr1304

By:

Carrascosa, Laura G.;
Gómez-Montes, S.;
Aviñó, A.;
Nadal, A.;
Pla, M.;
Eritja, R.;
Lechuga, L. M.

Publication type:

Article

Utp23p is required for dissociation of snR30 small nucleolar RNP from preribosomal particles.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3641, doi. 10.1093/nar/gkr1213

By:

Hoareau-Aveilla, Coralie;
Fayet-Lebaron, Eléonore;
Jády, Beáta E.;
Henras, Anthony K.;
Kiss, Tamás

Publication type:

Article

Transcription activation by the siderophore sensor Btr is mediated by ligand-dependent stimulation of promoter clearance.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3585, doi. 10.1093/nar/gkr1280

By:

Gaballa, Ahmed;
MacLellan, Shawn;
Helmann, John D.

Publication type:

Article

E2F7 represses a network of oscillating cell cycle genes to control S-phase progression.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3511, doi. 10.1093/nar/gkr1203

By:

Westendorp, Bart;
Mokry, Michal;
Groot Koerkamp, Marian J.A.;
Holstege, Frank C.P.;
Cuppen, Edwin;
de Bruin, Alain

Publication type:

Article

Type III restriction endonuclease EcoP15I is a heterotrimeric complex containing one Res subunit with several DNA-binding regions and ATPase activity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3610, doi. 10.1093/nar/gkr1239

By:

Wyszomirski, Karol H.;
Curth, Ute;
Alves, Jürgen;
Mackeldanz, Petra;
Möncke-Buchner, Elisabeth;
Schutkowski, Mike;
Krüger, Detlev H.;
Reuter, Monika

Publication type:

Article

Structuring the bacterial genome: Y1-transposases associated with REP-BIME sequences†.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3596, doi. 10.1093/nar/gkr1198

By:

Ton-Hoang, Bao;
Siguier, Patricia;
Quentin, Yves;
Onillon, Séverine;
Marty, Brigitte;
Fichant, Gwennaele;
Chandler, Mick

Publication type:

Article

Structural changes of an abasic site in duplex DNA affect noncovalent binding of the spin label ç.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3732, doi. 10.1093/nar/gkr1210

By:

Shelke, Sandip A.;
Sigurdsson, Snorri Th.

Publication type:

Article

Cdx2 homeoprotein inhibits non-homologous end joining in colon cancer but not in leukemia cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3456, doi. 10.1093/nar/gkr1242

By:

Renouf, Benjamin;
Soret, Christine;
Saandi, Thoueiba;
Delalande, François;
Martin, Elisabeth;
Vanier, Marie;
Duluc, Isabelle;
Gross, Isabelle;
Freund, Jean-Noël;
Domon-Dell, Claire

Publication type:

Article

A non-canonical E-box within the MyoD core enhancer is necessary for circadian expression in skeletal muscle.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3419, doi. 10.1093/nar/gkr1297

By:

Zhang, Xiping;
Patel, Samir P.;
McCarthy, John J.;
Rabchevsky, Alexander G.;
Goldhamer, David J.;
Esser, Karyn A.

Publication type:

Article

Rad26p regulates the occupancy of histone H2A–H2B dimer at the active genes in vivo.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3348, doi. 10.1093/nar/gkr1244

By:

Malik, Shivani;
Chaurasia, Priyasri;
Lahudkar, Shweta;
Uprety, Bhawana;
Bhaumik, Sukesh R.

Publication type:

Article

MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. e61, doi. 10.1093/nar/gkr1291

By:

Shen, Shihao;
Park, Juw Won;
Huang, Jian;
Dittmar, Kimberly A.;
Lu, Zhi-xiang;
Zhou, Qing;
Carstens, Russ P.;
Xing, Yi

Publication type:

Article

Role of replication protein A as sensor in activation of the S-phase checkpoint in Xenopus egg extracts.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3431, doi. 10.1093/nar/gkr1241

By:

Recolin, Bénédicte;
Van Der Laan, Siem;
Maiorano, Domenico

Publication type:

Article

Gene targeting to the ROSA26 locus directed by engineered zinc finger nucleases.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3741, doi. 10.1093/nar/gkr1214

By:

Perez-Pinera, Pablo;
Ousterout, David G.;
Brown, Matthew T.;
Gersbach, Charles A.

Publication type:

Article

Dissecting the protein–RNA interface: the role of protein surface shapes and RNA secondary structures in protein–RNA recognition.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3299, doi. 10.1093/nar/gkr1225

By:

Iwakiri, Junichi;
Tateishi, Hiroki;
Chakraborty, Anirban;
Patil, Prakash;
Kenmochi, Naoya

Publication type:

Article

Rad52 SUMOylation affects the efficiency of the DNA repair.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3775, doi. 10.1093/nar/gks252

By:

Altmannova, Veronika;
Eckert-Boulet, Nadine;
Arneric, Milica;
Kolesar, Peter;
Chaloupkova, Radka;
Damborsky, Jiri;
Sung, Patrick;
Zhao, Xiaolan;
Lisby, Michael;
Krejci, Lumir

Publication type:

Article

A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3623

By:

Fröhlich, Kathrin S.;
Papenfort, Kai;
Berger, Allison A.;
Vogel, Jörg

Publication type:

Article

Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3364, doi. 10.1093/nar/gkr1253

By:

Freudenberg, Johannes M.;
Ghosh, Swati;
Lackford, Brad L.;
Yellaboina, Sailu;
Zheng, Xiaofeng;
Li, Ruifang;
Cuddapah, Suresh;
Wade, Paul A.;
Hu, Guang;
Jothi, Raja

Publication type:

Article

Genome-wide Runx2 occupancy in prostate cancer cells suggests a role in regulating secretion.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3538, doi. 10.1093/nar/gkr1219

By:

Little, Gillian H.;
Noushmehr, Houtan;
Baniwal, Sanjeev K.;
Berman, Benjamin P.;
Coetzee, Gerhard A.;
Frenkel, Baruch

Publication type:

Article

Role of polynucleotide kinase/phosphatase in mitochondrial DNA repair.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3484, doi. 10.1093/nar/gkr1245

By:

Tahbaz, Nasser;
Subedi, Sudip;
Weinfeld, Michael

Publication type:

Article

Determinants of mRNA recognition and translation regulation by Lin28.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3574, doi. 10.1093/nar/gkr1279

By:

Lei, Xin-Xiang;
Xu, Jie;
Ma, Wei;
Qiao, Chong;
Newman, Martin A.;
Hammond, Scott M.;
Huang, Yingqun

Publication type:

Article

Flp and Cre expressed from Flp–2A–Cre and Flp–IRES–Cre transcription units mediate the highest level of dual recombinase-mediated cassette exchange.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. e62, doi. 10.1093/nar/gks027

By:

Anderson, Rachelle P.;
Voziyanova, Eugenia;
Voziyanov, Yuri

Publication type:

Article

Human box C/D snoRNA processing conservation across multiple cell types.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3676, doi. 10.1093/nar/gkr1233

By:

Scott, Michelle S.;
Ono, Motoharu;
Yamada, Kayo;
Endo, Akinori;
Barton, Geoffrey J.;
Lamond, Angus I.

Publication type:

Article

MRE11 and RAD50, but not NBS1, are essential for gene targeting in the moss Physcomitrella patens.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3496, doi. 10.1093/nar/gkr1272

By:

Kamisugi, Yasuko;
Schaefer, Didier G.;
Kozak, Jaroslav;
Charlot, Florence;
Vrielynck, Nathalie;
Holá, Marcela;
Angelis, Karel J.;
Cuming, Andrew C.;
Nogué, Fabien

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 8, p. i, doi. 10.1093/nar/gks112
Publication type:: Article

Secondary binding sites for heavily modified triplex forming oligonucleotides.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3753, doi. 10.1093/nar/gkr1119

By:

Cardew, Antonia S.;
Brown, Tom;
Fox, Keith R.

Publication type:

Article

B-DNA structure is intrinsically polymorphic: even at the level of base pair positions.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3714, doi. 10.1093/nar/gkr1168

By:

Maehigashi, Tatsuya;
Hsiao, Chiaolong;
Kruger Woods, Kristen;
Moulaei, Tinoush;
Hud, Nicholas V.;
Dean Williams, Loren

Publication type:

Article

Yin Yang 1 extends the Myc-related transcription factors network in embryonic stem cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3403, doi. 10.1093/nar/gkr1290

By:

Vella, Pietro;
Barozzi, Iros;
Cuomo, Alessandro;
Bonaldi, Tiziana;
Pasini, Diego

Publication type:

Article

Template-dependent polymerization across discontinuous templates by the heterodimeric primase from the hyperthermophilic archaeon Sulfolobus solfataricus.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3470, doi. 10.1093/nar/gkr1256

By:

Hu, Jinchuan;
Guo, Li;
Wu, Kangyun;
Liu, Bing;
Lang, Shiwei;
Huang, Li

Publication type:

Article

Nematode-specific tRNAs that decode an alternative genetic code for leucine.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3653, doi. 10.1093/nar/gkr1226

By:

Hamashima, Kiyofumi;
Fujishima, Kosuke;
Masuda, Takeshi;
Sugahara, Junichi;
Tomita, Masaru;
Kanai, Akio

Publication type:

Article

Structural conservation of an ancient tRNA sensor in eukaryotic glutaminyl-tRNA synthetase.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3723, doi. 10.1093/nar/gkr1223

By:

Grant, Thomas D.;
Snell, Edward H.;
Luft, Joseph R.;
Quartley, Erin;
Corretore, Stephanie;
Wolfley, Jennifer R.;
Elizabeth Snell, M.;
Hadd, Andrew;
Perona, John J.;
Phizicky, Eric M.;
Grayhack, Elizabeth J.

Publication type:

Article

Transcription initiation factor DksA has diverse effects on RNA chain elongation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3392, doi. 10.1093/nar/gkr1273

By:

Furman, Ran;
Sevostyanova, Anastasiya;
Artsimovitch, Irina

Publication type:

Article

Concerted nicking of donor and chromosomal acceptor DNA promotes homology-directed gene targeting in human cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3443

By:

Gonçalves, Manuel A. F. V.;
van Nierop, Gijsbert P.;
Holkers, Maarten;
de Vries, Antoine A. F.

Publication type:

Article

Differential effects of hnRNP D/AUF1 isoforms on HIV-1 gene expression.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 8, p. 3663, doi. 10.1093/nar/gkr1238

By:

Lund, Nicole;
Milev, Miroslav P.;
Wong, Raymond;
Sanmuganantham, Tharmila;
Woolaway, Kathryn;
Chabot, Benoit;
Abou Elela, Sherif;
Mouland, Andrew J.;
Cochrane, Alan

Publication type:

Article