Works matching AU Mavromatis, Konstantinos

Results: 62

Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0163-9

By:

Panschin, Irina;
Sixing Huang;
Meier-Kolthoff, Jan P.;
Tindall, Brian J.;
Rohde, Manfred;
Verbarg, Susanne;
Lapidus, Alla;
Han, James;
Trong, Stephan;
Haynes, Matthew;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia N.;
Mavromatis, Konstantinos;
Markowitz, Victor;
Woyke, Tanja;
Göker, Markus;
Klenk, Hans-Peter;
Kyrpides, Nikos C.

Publication type:

Article

Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0148-8

By:

Huntemann, Marcel;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Tripp, H.;
Paez-Espino, David;
Palaniappan, Krishnaveni;
Szeto, Ernest;
Pillay, Manoj;
Chen, I-Min;
Pati, Amrita;
Nielsen, Torben;
Markowitz, Victor;
Kyrpides, Nikos

Publication type:

Article

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0138-x

By:

Huntemann, Marcel;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Tripp, H.;
Paez-Espino, David;
Tennessen, Kristin;
Palaniappan, Krishnaveni;
Szeto, Ernest;
Pillay, Manoj;
Chen, I-Min;
Pati, Amrita;
Nielsen, Torben;
Markowitz, Victor;
Kyrpides, Nikos

Publication type:

Article

Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0100-3

By:

Billings, Andrew;
Fortney, Julian;
Hazen, Terry;
Simmons, Blake;
Davenport, Karen;
Goodwin, Lynne;
Ivanova, Natalia;
Kyrpides, Nikos;
Mavromatis, Konstantinos;
Woyke, Tanja;
DeAngelis, Kristen

Publication type:

Article

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0077-y

By:

Huntemann, Marcel;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Tripp, H.;
Paez-Espino, David;
Palaniappan, Krishnaveni;
Szeto, Ernest;
Pillay, Manoj;
Chen, I-Min;
Pati, Amrita;
Nielsen, Torben;
Markowitz, Victor;
Kyrpides, Nikos

Publication type:

Article

High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884T) isolated from a Chironomus sp. egg mass.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0010-4

By:

Laviad, Sivan;
Lapidus, Alla;
Han, James;
Haynes, Matthew;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia N.;
Mavromatis, Konstantinos;
Lang, Elke;
Rohde, Manfred;
Markowitz, Victor;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Halpern, Malka

Publication type:

Article

Draft genome sequence of Halomonas lutea strain YIM 91125T (DSM 23508T) isolated from the alkaline Lake Ebinur in Northwest China.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-1

By:

Gao, Xiao-Yang;
Zhi, Xiao-Yang;
Li, Hong-Wei;
Yu Zhou;
Alla Lapidus;
James Han;
Haynes, Matthew;
Lobos, Elizabeth;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia N.;
Mavromatis, Konstantinos;
Tindall, Brian J.;
Markowitz, Victor;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Wen-Jun Li

Publication type:

Article

Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 551, doi. 10.4056/sigs.5008793

By:

Walker, Robert;
Watkin, Elizabeth;
Tian, Rui;
Bräu, Lambert;
O'Hara, Graham;
Goodwin, Lynne;
Han, James;
Lobos, Elizabeth;
Huntemann, Marcel;
Pati, Amrita;
Woyke, Tanja;
Mavromatis, Konstantinos;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

High quality draft genome sequence of Olivibacter sitiensis type strain (AW-6), a diphenol degrader with genes involved in the catechol pathway.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 783, doi. 10.4056/sigs.5088950

By:

Ntougias, Spyridon;
Lapidus, Alla;
Han, James;
Mavromatis, Konstantinos;
Pati, Amrita;
Chen, Amy;
Klenk, Hans-Peter;
Woyke, Tanja;
Fasseas, Constantinos;
Kyrpides, Nikos;
Zervakis, Georgios

Publication type:

Article

High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1020, doi. 10.4056/sigs.5449586

By:

Zhou, Yu;
Li, Rui;
Gao, Xiao-Yang;
Lapidus, Alla;
Han, James;
Haynes, Matthew;
Lobos, Elizabeth;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia;
Rohde, Manfred;
Mavromatis, Konstantinos;
Tindall, Brian;
Markowitz, Victor;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos;
Li, Wen-Jun

Publication type:

Article

Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1076, doi. 10.4056/sigs.5138968

By:

Göker, Markus;
Lu, Megan;
Fiebig, Anne;
Nolan, Matt;
Lapidus, Alla;
Tice, Hope;
Glavina Del Rio, Tijana;
Cheng, Jan-Fang;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Mavromatis, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mikhailova, Natalia;
Pati, Amrita;
Chen, Amy;
Palaniappan, Krishna

Publication type:

Article

Genome sequence of the Thermotoga thermarum type strain (LA3) from an African solfataric spring.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1105, doi. 10.4056/sigs.3016383

By:

Göker, Markus;
Spring, Stefan;
Scheuner, Carmen;
Anderson, Iain;
Zeytun, Ahmet;
Nolan, Matt;
Lucas, Susan;
Tice, Hope;
Glavina Del Rio, Tijana;
Cheng, Jan-Fang;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Mavromatis, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mikhailova, Natalia;
Pati, Amrita

Publication type:

Article

Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2232 from Karijini National Park, Australia.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1168, doi. 10.4056/sigs.5018795

By:

Walker, Robert;
Watkin, Elizabeth;
Tian, Rui;
Bräu, Lambert;
O'Hara, Graham;
Goodwin, Lynne;
Han, James;
Reddy, Tatiparthi;
Huntemann, Marcel;
Pati, Amrita;
Woyke, Tanja;
Mavromatis, Konstantinos;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Genome sequence of Microvirga lupini strain LUT6, a novel Lupinus alphaproteobacterial microsymbiont from Texas.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1159, doi. 10.4056/sigs.5249382

By:

Reeve, Wayne;
Parker, Matthew;
Tian, Rui;
Goodwin, Lynne;
Teshima, Hazuki;
Tapia, Roxanne;
Han, Cliff;
Han, James;
Liolios, Konstantinos;
Huntemann, Marcel;
Pati, Amrita;
Woyke, Tanja;
Mavromatis, Konstantinos;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos

Publication type:

Article

Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 304, doi. 10.4056/sigs.4598281

By:

Tak, Nisha;
Gehlot, Hukam;
Kaushik, Muskan;
Choudhary, Sunil;
Tiwari, Ravi;
Tian, Rui;
Hill, Yvette;
Bräu, Lambert;
Goodwin, Lynne;
Han, James;
Liolios, Konstantinos;
Huntemann, Marcel;
Palaniappan, Krishna;
Pati, Amrita;
Mavromatis, Konstantinos;
Ivanova, Natalia;
Markowitz, Victor;
Woyke, Tanja;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 294, doi. 10.4056/sigs.4538264

By:

Reeve, Wayne;
Nandasena, Kemanthi;
Yates, Ron;
Tiwari, Ravi;
O'Hara, Graham;
Ninawi, Mohamed;
Chertkov, Olga;
Goodwin, Lynne;
Bruce, David;
Detter, Chris;
Tapia, Roxanne;
Han, Shunseng;
Woyke, Tanja;
Pitluck, Sam;
Nolan, Matt;
Land, Miriam;
Copeland, Alex;
Liolios, Konstantinos;
Pati, Amrita;
Mavromatis, Konstantinos

Publication type:

Article

Genome sequence of Ensifer meliloti strain WSM1022; a highly effective microsymbiont of the model legume Medicago truncatula A17.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 315, doi. 10.4056/sigs.4608286

By:

Terpolilli, Jason;
Hill, Yvette;
Tian, Rui;
Howieson, John;
Bräu, Lambert;
Goodwin, Lynne;
Han, James;
Liolios, Konstantinos;
Huntemann, Marcel;
Pati, Amrita;
Woyke, Tanja;
Mavromatis, Konstantinos;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Genome sequence of the Lebeckia ambigua-nodulating ' Burkholderia sprentiae' strain WSM5005.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 385, doi. 10.4056/sigs.4558268

By:

Reeve, Wayne;
Meyer, Sofie;
Terpolilli, Jason;
Melino, Vanessa;
Ardley, Julie;
Rui, Tian;
Tiwari, Ravi;
Howieson, John;
Yates, Ron;
O'Hara, Graham;
Lu, Megan;
Bruce, David;
Detter, Chris;
Tapia, Roxanne;
Han, Cliff;
Wei, Chia-Lin;
Huntemann, Marcel;
Han, James;
Chen, I-Min;
Mavromatis, Konstantinos

Publication type:

Article

Complete genome sequence of Mesorhizobium australicum type strain (WSM2073).

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 410, doi. 10.4056/sigs.4568282

By:

Reeve, Wayne;
Nandasena, Kemanthi;
Yates, Ron;
Tiwari, Ravi;
O'Hara, Graham;
Ninawi, Mohamed;
Gu, Wei;
Goodwin, Lynne;
Detter, Chris;
Tapia, Roxanne;
Han, Cliff;
Copeland, Alex;
Liolios, Konstantinos;
Chen, Amy;
Markowitz, Victor;
Pati, Amrita;
Mavromatis, Konstantinos;
Woyke, Tanja;
Kyrpides, Nikos;
Ivanova, Natalia

Publication type:

Article

Genome sequence of Ensifer medicae strain WSM1369; an effective microsymbiont of the annual legume Medicago sphaerocarpos.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 420, doi. 10.4056/sigs.4838624

By:

Terpolilli, Jason;
Garau, Giovanni;
Hill, Yvette;
Tian, Rui;
Howieson, John;
Bräu, Lambert;
Goodwin, Lynne;
Han, James;
Liolios, Konstantinos;
Huntemann, Marcel;
Pati, Amrita;
Woyke, Tanja;
Mavromatis, Konstantinos;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 220, doi. 10.4056/sigs.4468250

By:

Reeve, Wayne;
Drew, Elizabeth;
Ballard, Ross;
Melino, Vanessa;
Tian, Rui;
Meyer, Sofie;
Brau, Lambert;
Ninawi, Mohamed;
Teshima, Hazuki;
Goodwin, Lynne;
Chain, Patrick;
Liolios, Konstantinos;
Pati, Amrita;
Mavromatis, Konstantinos;
Ivanova, Natalia;
Markowitz, Victor;
Woyke, Tanja;
Kyrpides, Nikos

Publication type:

Article

Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701) and emended description of the genus Thermanaerovibrio.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 57, doi. 10.4056/sigs.4237901

By:

Palaniappan, Krishna;
Meier-Kolthoff, Jan;
Teshima, Hazuki;
Nolan, Matt;
Lapidus, Alla;
Tice, Hope;
Glavina Del Rio, Tijana;
Cheng, Jan-Fang;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Mavromatis, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mikhailova, Natalia;
Pati, Amrita;
Chen, Amy;
Rohde, Manfred

Publication type:

Article

Genome sequence of Frateuria aurantia type strain (Kondô 67), a xanthomonade isolated from Lilium auratium Lindl.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 83, doi. 10.4056/sigs.4338002

By:

Anderson, Iain;
Teshima, Huzuki;
Nolan, Matt;
Lapidus, Alla;
Tice, Hope;
Glavina Del Rio, Tijana;
Cheng, Jan-Fang;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Mavromatis, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mikhailova, Natalia;
Pati, Amrita;
Chen, Amy;
Palaniappan, Krishna;
Land, Miriam

Publication type:

Article

Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055).

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 177, doi. 10.4056/sigs.3637201

By:

Huntemann, Marcel;
Stackebrandt, Erko;
Held, Brittany;
Nolan, Matt;
Lucas, Susan;
Hammon, Nancy;
Deshpande, Shweta;
Cheng, Jan-Fang;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Mikhailova, Natalia;
Pati, Amrita;
Chen, Amy;
Palaniappan, Krishna;
Land, Miriam

Publication type:

Article

Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H), and emendation of the species Turneriella parva.

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 228, doi. 10.4056/sigs.3617113

By:

Stackebrandt, Erko;
Chertkov, Olga;
Lapidus, Alla;
Nolan, Matt;
Lucas, Susan;
Hammon, Nancy;
Deshpande, Shweta;
Cheng, Jan-Fang;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Mikhailova, Natalia;
Huntemann, Marcel;
Pati, Amrita;
Chen, Amy;
Palaniappan, Krishna

Publication type:

Article

Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692) from the alkaline Lake Magadi in the East African Rift.

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 165, doi. 10.4056/sigs.3607108

By:

Liolos, Konstantinos;
Abt, Birte;
Scheuner, Carmen;
Teshima, Hazuki;
Held, Brittany;
Lapidus, Alla;
Nolan, Matt;
Lucas, Susan;
Deshpande, Shweta;
Cheng, Jan-Fang;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Pagani, Ioanna;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Mikhailova, Natalia;
Huntemann, Marcel;
Pati, Amrita;
Chen, Amy

Publication type:

Article

Complete genome sequence of Coriobacterium glomerans type strain (PW2) from the midgut of Pyrrhocoris apterus L. (red soldier bug).

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 15, doi. 10.4056/sigs.3507020

By:

Stackebrandt, Erko;
Zeytun, Ahmet;
Lapidus, Alla;
Nolan, Matt;
Lucas, Susan;
Hammon, Nancy;
Deshpande, Shweta;
Cheng, Jan-Fang;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Mikhailova, Natalia;
Huntemann, Marcel;
Pati, Amrita;
Chen, Amy;
Palaniappan, Krishna

Publication type:

Article

Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 88, doi. 10.4056/sigs.3096473

By:

Abt, Birte;
Göker, Markus;
Scheuner, Carmen;
Han, Cliff;
Lu, Megan;
Misra, Monica;
Lapidus, Alla;
Nolan, Matt;
Lucas, Susan;
Hammon, Nancy;
Deshpande, Shweta;
Cheng, Jan-Fang;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Mikhailova, Natalia

Publication type:

Article

High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5).

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 37, doi. 10.4056/sigs.3537045

By:

Stackebrandt, Erko;
Chertkov, Olga;
Lapidus, Alla;
Nolan, Matt;
Lucas, Susan;
Han, Cliff;
Cheng, Jan-Fang;
Tapia, Roxanne;
Goodwin, Lynne;
Bruce, David;
Pitluck, Sam;
Liolios, Konstantinos;
Mavromatis, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mikhailova, Natalia;
Huntemann, Marcel;
Pati, Amrita;
Chen, Amy;
Palaniappan, Krishna

Publication type:

Article

Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA).

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 47, doi. 10.4056/sigs.3547050

By:

Mavromatis, Konstantinos;
Stackebrandt, Erko;
Held, Brittany;
Lapidus, Alla;
Nolan, Matt;
Lucas, Susan;
Hammon, Nancy;
Deshpande, Shweta;
Cheng, Jan-Fang;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mikhailova, Natalia;
Huntemann, Marcel;
Pati, Amrita;
Chen, Amy;
Palaniappan, Krishna

Publication type:

Article

Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437).

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 26, doi. 10.4056/sigs.3527032

By:

Mavromatis, Konstantinos;
Stackebrandt, Erko;
Munk, Christine;
Lapidus, Alla;
Nolan, Matt;
Lucas, Susan;
Hammon, Nancy;
Deshpande, Shweta;
Cheng, Jan-Fang;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mikhailova, Natalia;
Huntemann, Marcel;
Pati, Amrita;
Chen, Amy;
Palaniappan, Krishna

Publication type:

Article

Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron.

Published in:

Standards in Genomic Sciences, 2013, v. 7, n. 3, p. 382, doi. 10.4056/sigs.3377516

By:

DeAngelis, Kristen M.;
D'Haeseleer, Patrik;
Chivian, Dylan;
Simmons, Blake;
Arkin, Adam P.;
Mavromatis, Konstantinos;
Malfatti, Stephanie;
Tringe, Susannah;
Hazen, Terry C.

Publication type:

Article

Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8T).

Published in:

Standards in Genomic Sciences, 2012, v. 7, n. 2, p. 210, doi. 10.4056/sigs.3117229

By:

Anderson, Iain;
Munk, Christine;
Lapidus, Alla;
Nolan, Matt;
Lucas, Susan;
Tice, Hope;
Del Rio, Tijana Glavina;
Jan-Fang Cheng;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Mavromatis, Konstantinos;
Pagani, Ioanna;
Mikhailova, Natalia;
Pati, Amrita;
Chen, Amy;
Palaniappan, Krishna;
Land, Miriam

Publication type:

Article

Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282T).

Published in:

Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 107, doi. 10.4056/sigs.3216895

By:

Riedel, Thomas;
Held, Brittany;
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Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801T).

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Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 120, doi. 10.4056/sigs.3296896

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Riedel, Thomas;
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Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne A.;
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Liolios, Konstantinos;
Mavromatis, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
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The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projectsand their associated metadata.

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Nucleic Acids Research, 2010, v. 38, p. D346, doi. 10.1093/nar/gkp848

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Liolios, Konstantinos;
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The integrated microbial genomes system: an expanding comparative analysis resource.

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Nucleic Acids Research, 2010, v. 38, p. D382, doi. 10.1093/nar/gkp887

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Markowitz, Victor M.;
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Ken Chu;
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Grechkin, Yuri;
Ratner, Anna;
Anderson, Iain;
Lykidis, Athanasios;
Mavromatis, Konstantinos;
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Kyrpides, Nikos C.

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Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach.

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Nucleic Acids Research, 2009, v. 37, n. 7, p. 2096, doi. 10.1093/nar/gkp075

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Hooper, Sean D.;
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The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata.

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Nucleic Acids Research, 2008, v. 36, p. D475

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Liolios, Konstantinos;
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IMG/M: a data management and analysis system for metagenomes.

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Nucleic Acids Research, 2008, v. 36, p. D534

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Markowitz, Victor M.;
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Grechkin, Yuri;
Dubchak, Inna;
Anderson, Iain;
Lykidis, Athanasios;
Mavromatis, Konstantinos;
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Kyrpides, Nikos C.

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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions.

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Nucleic Acids Research, 2008, v. 36, p. D528

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Markowitz, Victor M.;
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Dubchak, Inna;
Anderson, Iain;
Lykidis, Athanasios;
Mavromatis, Konstantinos;
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Kyrpides, Nikos C.

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The integrated microbial genomes (IMG) system.

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Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d344, doi. 10.1093/nar/gkj024

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Markowitz, Victor M.;
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Werner, Greg;
Padki, Anu;
Zhao, Xueling;
Dubchak, Inna;
Hugenholtz, Philip;
Anderson, Iain;
Lykidis, Athanasios;
Mavromatis, Konstantinos;
Ivanova, Natalia;
Kyrpides, Nikos C.

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Mode of action and antifungal properties of two cold-adapted chitinases.

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Extremophiles, 2003, v. 7, n. 5, p. 385, doi. 10.1007/s00792-003-0338-3

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Mavromatis, Konstantinos;
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Nature, 2009, v. 462, n. 7276, p. 1056, doi. 10.1038/nature08656

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Dongying Wu;
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Wu, Martin;
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Hooper, Sean D.;
Pati, Amrita;
Lykidis, Athanasios;
Spring, Stefan;
Anderson, Iain J.;
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Zemla, Adam;
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Genome Analysis of Planctomycetes Inhabiting Blades of the Red Alga Porphyra umbilicalis.

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PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0151883

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Kim, Jay W.;
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Jenkins, Jerry;
LaButti, Kurt;
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Nolan, Matt;
Zane, Matthew;
Schmutz, Jeremy;
Stiller, John W.;
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Estimating DNA coverage and abundance in metagenomes using a gamma approximation.

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Bioinformatics, 2010, v. 26, n. 3, p. 295, doi. 10.1093/bioinformatics/btp687

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Hooper, Sean D.;
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Kyrpides, Nikos C.

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IMG ER: a system for microbial genome annotation expert review and curation.

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Bioinformatics, 2009, v. 25, n. 17, p. 2271, doi. 10.1093/bioinformatics/btp393

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Markowitz, Victor M.;
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Chu, Ken;
Kyrpides, Nikos C.

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Annotation of metagenome short reads using proxygenes.

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Bioinformatics, 2008, v. 24, n. 16, p. i7, doi. 10.1093/bioinformatics/btn276

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Daniel Dalevi;
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Ernest Szeto;
Philip Hugenholtz;
Nikos C. Kyrpides;
Victor M. Markowitz

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Bacterial Vaginosis and Group B Streptococcal Colonization and Preterm Delivery in a Low-Risk Population.

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Fetal Diagnosis & Therapy, 2006, v. 21, n. 2, p. 172, doi. 10.1159/000089298

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Daskalakis, George;
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FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus.

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Nucleic Acids Research, 2014, v. 42, n. 19, p. e145, doi. 10.1093/nar/gku702

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Prestat, Emmanuel;
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Taş, Neslihan;
Lamendella, Regina;
Dvornik, Jill;
Mackelprang, Rachel;
Myrold, David D.;
Jumpponen, Ari;
Tringe, Susannah G.;
Holman, Elizabeth;
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