Works matching IS 0305-1048 AND VI 34 AND IP 10 AND DT 2006

Results: 35

Identifying an interaction site between MutH and the C-terminal domain of MutL by crosslinking, affinity purification, chemical coding and mass spectrometry.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 3169, doi. 10.1093/nar/gkl407

By:

Ahrends, Robert;
Kosinski, Jan;
Kirsch, Dieter;
Manelyte, Laura;
Giron-Monzon, Luis;
Hummerich, Lars;
Schulz, Oliver;
Spengler, Bernhard;
Friedhoff, Peter

Publication type:

Article

The nucleolar protein Esf2 interacts directly with the DExD/H box RNA helicase, Dbp8, to stimulate ATP hydrolysis.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 3189, doi. 10.1093/nar/gkl419

By:

Granneman, Sander;
Lin, ChieYu;
Champion, Erica A.;
Nandineni, Madhusudan R.;
Zorca, Cornelia;
Baserga, Susan J.

Publication type:

Article

A base pair at the bottom of the anticodon stem is reciprocally preferred for discrimination of cognate tRNAs by Escherichia coli lysyl- and glutaminyl-tRNA synthetases.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 3181, doi. 10.1093/nar/gkl414

By:

Fukunaga, Jun-ichi;
Ohno, Satoshi;
Nishikawa, Kazuya;
Yokogawa, Takashi

Publication type:

Article

Xp54 and related (DDX6-like) RNA helicases: roles in messenger RNP assembly, translation regulation and RNA degradation.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 3082, doi. 10.1093/nar/gkl409

By:

Weston, Andrew;
Sommerville, John

Publication type:

Article

Pyrene binary probes for unambiguous detection of mRNA using time-resolved fluorescence spectroscopy.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 3161, doi. 10.1093/nar/gkl406

By:

Martí, Angel A.;
Li, Xiaoxu;
Jockusch, Steffen;
Li, Zengmin;
Raveendra, Bindu;
Kalachikov, Sergey;
Russo, James J.;
Morozova, Irina;
Puthanveettil, Sathyanarayanan V.;
Ju, Jingyue;
Turro, Nicholas J.

Publication type:

Article

Characteristics of MuA transposase-catalyzed processing of model transposon end DNA hairpin substrates.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 3139, doi. 10.1093/nar/gkl405

By:

Saariaho, Anna-Helena;
Savilahti, Harri

Publication type:

Article

Involvement of ϕ29 DNA polymerase thumb subdomain in the proper coordination of synthesis and degradation during DNA replication.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 3107, doi. 10.1093/nar/gkl402

By:

Pérez-Arnaiz, Patricia;
Lázaro, José M.;
Salas, Margarita;
de Vega, Miguel

Publication type:

Article

Structural analysis of hyperperiodic DNA from Caenorhabditis elegans.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 3057, doi. 10.1093/nar/gkl397

By:

Moreno-Herrero, Fernando;
Seidel, Ralf;
Johnson, Steven M.;
Fire, Andrew;
Dekker, Nynke H.

Publication type:

Article

An expectation-maximization algorithm for probabilistic reconstructions of full-length isoforms from splice graphs.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 3150, doi. 10.1093/nar/gkl396

By:

Xing, Yi;
Yu, Tianwei;
Wu, Ying Nian;
Roy, Meenakshi;
Kim, Joseph;
Lee, Christopher

Publication type:

Article

Distribution of gyrase and topoisomerase IV on bacterial nucleoid: implications for nucleoid organization.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 3128, doi. 10.1093/nar/gkl392

By:

Hsu, Ya-Han;
Chung, Meng-Wen;
Li, Tsai-Kun

Publication type:

Article

Hepatitis B virus X protein and the estrogen receptor variant lacking exon 5 inhibit estrogen receptor signaling in hepatoma cells.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 3095, doi. 10.1093/nar/gkl389

By:

Han, Juqiang;
Ding, Lihua;
Yuan, Bin;
Yang, Xiao;
Wang, Xiaohui;
Li, Jiezhi;
Lu, Qiujun;
Huang, Cuifen;
Ye, Qinong

Publication type:

Article

Aptamer mediated siRNA delivery.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. e73, doi. 10.1093/nar/gkl388

By:

Chu, Ted C.;
Twu, Karen Y.;
Ellington, Andrew D.;
Levy, Matthew

Publication type:

Article

Nitric oxide activation of Erk1/2 regulates the stability and translation of mRNA transcripts containing CU-rich elements.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 3044, doi. 10.1093/nar/gkl386

By:

Wang, Shuibang;
Zhang, Jianhua;
Theel, Stephanie;
Barb, Jennifer J.;
Munson, Peter J.;
Danner, Robert L.

Publication type:

Article

Common determinants in DNA melting and helicase-catalysed DNA unwinding by papillomavirus replication protein E1.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 3008, doi. 10.1093/nar/gkl384

By:

Castella, Sandrine;
Bingham, Gregg;
Sanders, Cyril M.

Publication type:

Article

Substitutions of Thr30 provide mechanistic insight into tryptophan-mediated activation of TRAP binding to RNA.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 2933, doi. 10.1093/nar/gkl383

By:

Payal, Vandana;
Gollnick, Paul

Publication type:

Article

DNA looping by two-site restriction endonucleases: heterogeneous probability distributions for loop size and unbinding force.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 2864, doi. 10.1093/nar/gkl382

By:

Gemmen, Gregory J.;
Millin, Rachel;
Smith, Douglas E.

Publication type:

Article

Computational disease gene identification: a concert of methods prioritizes type 2 diabetes and obesity candidate genes.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 3067, doi. 10.1093/nar/gkl381

By:

Tiffin, Nicki;
Adie, Euan;
Turner, Frances;
Brunner, Han G.;
van Driel, Marc A.;
Oti, Martin;
Lopez-Bigas, Nuria;
Ouzounis, Christos;
Perez-Iratxeta, Carolina;
Andrade-Navarro, Miguel A.;
Adeyemo, Adebowale;
Patti, Mary Elizabeth;
Semple, Colin A. M.;
Hide, Winston

Publication type:

Article

The DNA polymerase λ is required for the repair of non-compatible DNA double strand breaks by NHEJ in mammalian cells.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 2998, doi. 10.1093/nar/gkl380

By:

Capp, Jean-Pascal;
Boudsocq, François;
Bertrand, Pascale;
Laroche-Clary, Audrey;
Pourquier, Philippe;
Lopez, Bernard S.;
Cazaux, Christophe;
Hoffmann, Jean-Sébastien;
Canitrot, Yvan

Publication type:

Article

Dominant-negative Pes1 mutants inhibit ribosomal RNA processing and cell proliferation via incorporation into the PeBoW-complex.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 3030, doi. 10.1093/nar/gkl378

By:

Grimm, Thomas;
Hölzel, Michael;
Rohrmoser, Michaela;
Harasim, Thomas;
Malamoussi, Anastassia;
Gruber-Eber, Anita;
Kremmer, Elisabeth;
Eick, Dirk

Publication type:

Article

Depletion of SMN by RNA interference in HeLa cells induces defects in Cajal body formation.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 2925, doi. 10.1093/nar/gkl374

By:

Girard, Cyrille;
Neel, Henry;
Bertrand, Edouard;
Bordonné, Rémy

Publication type:

Article

New, extended hairpin form of the TAR-2 RNA domain points to the structural polymorphism at the 5′ end of the HIV-2 leader RNA.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 2984, doi. 10.1093/nar/gkl373

By:

Pachulska-Wieczorek, Katarzyna;
Purzycka, Katarzyna J.;
Adamiak, Ryszard W.

Publication type:

Article

Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 2976

By:

He, Housheng;
Cai, Lun;
Skogerbø, Geir;
Deng, Wei;
Liu, Tao;
Zhu, Xiaopeng;
Wang, Yudong;
Jia, Dong;
Zhang, Zhihua;
Tao, Yong;
Zeng, Haipan;
Aftab, Muhammad Nauman;
Cui, Yan;
Liu, Guozhen;
Chen, Runsheng

Publication type:

Article

Displacement of a DNA binding protein by Dda helicase.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 3020, doi. 10.1093/nar/gkl369

By:

Byrd, Alicia K.;
Raney, Kevin D.

Publication type:

Article

Protein complex compositions predicted by structural similarity.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 2943, doi. 10.1093/nar/gkl353

By:

Davis, Fred P.;
Braberg, Hannes;
Shen, Min-Yi;
Pieper, Ursula;
Sali, Andrej;
Madhusudhan, M.S.

Publication type:

Article

Electrochemical detection of mismatched DNA using a MutS probe.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. e75, doi. 10.1093/nar/gkl364

By:

Cho, Minseon;
Lee, Sohyun;
Han, Se-Young;
Park, Jin-Young;
Rahman, Md Aminur;
Shim, Yoon-Bo;
Ban, Changill

Publication type:

Article

Analysis of HIV-1 replication block due to substitutions at F61 residue of reverse transcriptase reveals additional defects involving the RNase H function.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 2853, doi. 10.1093/nar/gkl360

By:

Mandal, Dibyakanti;
Dash, Chandravanu;
Le Grice, Stuart F. J.;
Prasad, Vinayaka R.

Publication type:

Article

Polyadenylation of ribosomal RNA in human cells.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 2966, doi. 10.1093/nar/gkl357

By:

Slomovic, Shimyn;
Laufer, David;
Geiger, Dan;
Schuster, Gadi

Publication type:

Article

Human Rad51 protein displays enhanced homologous pairing of DNA sequences resembling those at genetically unstable loci.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 2847, doi. 10.1093/nar/gkl355

By:

Seitz, Erica M.;
Kowalczykowski, Stephen C.

Publication type:

Article

Hybridase activity of human ribonuclease-1 revealed by a real-time fluorometric assay.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 2906, doi. 10.1093/nar/gkl368

By:

Potenza, Nicoletta;
Salvatore, Vincenzo;
Migliozzi, Annalucia;
Martone, Valentina;
Nobile, Valentina;
Russo, Aniello

Publication type:

Article

Polyadenylation of genomic RNA and initiation of antigenomic RNA in a positive-strand RNA virus are controlled by the same cis-element.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 2953, doi. 10.1093/nar/gkl349

By:

van Ooij, Mark J. M.;
Polacek, Charlotta;
Glaudemans, Dirk H. R. F.;
Kuijpers, Judith;
van Kuppeveld, Frank J. M.;
Andino, Raul;
Agol, Vadim I.;
Melchers, Willem J. G.

Publication type:

Article

Dynamic recruitment of transcription factors and epigenetic changes on the ER stress response gene promoters.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 3116, doi. 10.1093/nar/gkl304

By:

Donati, Giacomo;
Imbriano, Carol;
Mantovani, Roberto

Publication type:

Article

Identification of multiple distinct Snf2 subfamilies with conserved structural motifs.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 2887, doi. 10.1093/nar/gkl295

By:

Flaus, Andrew;
Martin, David M. A.;
Barton, Geoffrey J.;
Owen-Hughes, Tom

Publication type:

Article

Chromosome XII context is important for rDNA function in yeast.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 2914, doi. 10.1093/nar/gkl293

By:

Kim, Yeon-Hee;
Ishikawa, Daisuke;
Ha, Ho Phu;
Sugiyama, Minetaka;
Kaneko, Yoshinobu;
Harashima, Satoshi

Publication type:

Article

Purification and preconcentration of genomic DNA from whole cell lysates using photoactivated polycarbonate (PPC) microfluidic chips.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. e74, doi. 10.1093/nar/gkl146

By:

Witek, Małgorzata A.;
Llopis, Shawn D.;
Wheatley, Abigail;
McCarley, Robin L.;
Soper, Steven A.

Publication type:

Article

The naturally occurring N6-threonyl adenine in anticodon loop of Schizosaccharomyces pombe tRNAi causes formation of a unique U-turn motif.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 10, p. 2878, doi. 10.1093/nar/gkl081

By:

Lescrinier, Eveline;
Nauwelaerts, Koen;
Zanier, Katia;
Poesen, Koen;
Sattler, Michael;
Herdewijn, Piet

Publication type:

Article