Works matching AU Breitling, Rainer
Results: 101
Output ordering and prioritisation system (OOPS): ranking biosynthetic gene clusters to enhance bioactive metabolite discovery.
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- Journal of Industrial Microbiology & Biotechnology, 2018, v. 45, n. 7, p. 615, doi. 10.1007/s10295-017-1993-1
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- Article
Steatoda nobilis, a false widow on the rise: a synthesis of past and current distribution trends.
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- NeoBiota, 2019, n. 42, p. 19, doi. 10.3897/neobiota.42.31582
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- Article
Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments
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- FEBS Letters, 2004, v. 573, n. 1-3, p. 83, doi. 10.1016/j.febslet.2004.07.055
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- Article
A circuit model of the temporal pattern generator of Caenorhabditis egg-laying behavior.
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- BMC Systems Biology, 2010, v. 4, p. 81, doi. 10.1186/1752-0509-4-81
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- Article
Development and validation of an updated computational model of <italic>Streptomyces coelicolor</italic> primary and secondary metabolism.
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- BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4905-5
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- Article
A fast algorithm for determining bounds and accurate approximate p-values of the rank product statistic for replicate experiments.
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- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/s12859-014-0367-1
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- Article
DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules.
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- BMC Bioinformatics, 2010, v. 11, p. 497, doi. 10.1186/1471-2105-11-497
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- Article
A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.
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- BMC Bioinformatics, 2007, v. 8, p. 132, doi. 10.1186/1471-2105-8-132
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- Article
GeneRank: Using search engine technology for the analysis of microarray experiments.
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- BMC Bioinformatics, 2005, v. 6, p. 233, doi. 10.1186/1471-2105-6-233
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- Article
Vector analysis as a fast and easy method to compare gene expression responses between different experimental backgrounds.
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- BMC Bioinformatics, 2005, v. 6, p. 181, doi. 10.1186/1471-2105-6-181
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- Article
Graph-based iterative Group Analysis enhances microarray interpretation.
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- BMC Bioinformatics, 2004, v. 5, p. 100, doi. 10.1186/1471-2105-5-100
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- Article
Iterative Group Analysis (iGA): A simple tool to enhance sensitivity and facilitate interpretation of microarray experiments.
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- BMC Bioinformatics, 2004, v. 5, p. 34, doi. 10.1186/1471-2105-5-34
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- Article
Computational identification of co-evolving multi-gene modules in microbial biosynthetic gene clusters.
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- Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0333-6
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- Article
The silicon trypanosome.
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- Parasitology, 2010, v. 137, n. 9, p. 1333, doi. 10.1017/S0031182010000466
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- Article
Metabolomic systems biology of trypanosomes.
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- Parasitology, 2010, v. 137, n. 9, p. 1285, doi. 10.1017/S003118201000017X
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- Article
The potential of metabolomics for Leishmania research in the post-genomics era.
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- Parasitology, 2010, v. 137, n. 9, p. 1291, doi. 10.1017/S0031182009992022
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- Article
Defining informative priors for ensemble modeling in systems biology.
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- Nature Protocols, 2018, v. 13, n. 11, p. 2643, doi. 10.1038/s41596-018-0056-z
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- Article
Carboxylic acid reductase-dependent biosynthesis of eugenol and related allylphenols.
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- Microbial Cell Factories, 2023, v. 22, n. 1, p. 1, doi. 10.1186/s12934-023-02246-4
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- Article
Probing the Metabolic Network in Bloodstream-Form Trypanosoma brucei Using Untargeted Metabolomics with Stable Isotope Labelled Glucose.
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- PLoS Pathogens, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.ppat.1004689
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- Article
Phospho<i>enol</i>pyruvate Carboxylase Identified as a Key Enzyme in Erythrocytic <i>Plasmodium falciparum</i> Carbon Metabolism.
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- PLoS Pathogens, 2014, v. 10, n. 1, p. 1, doi. 10.1371/journal.ppat.1003876
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- Article
New surveyor tools for charting microbial metabolic maps.
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- Nature Reviews Microbiology, 2008, v. 6, n. 2, p. 156, doi. 10.1038/nrmicro1797
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- Article
ipaPy2: Integrated Probabilistic Annotation (IPA) 2.0—an improved Bayesian-based method for the annotation of LC–MS/MS untargeted metabolomics data.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad455
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- Article
Selenzyme: enzyme selection tool for pathway design.
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- Bioinformatics, 2018, v. 34, n. 12, p. 2153, doi. 10.1093/bioinformatics/bty065
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- Article
RankProd 2.0: a refactored bioconductor package for detecting differentially expressed features in molecular profiling datasets.
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- Bioinformatics, 2017, v. 33, n. 17, p. 2774, doi. 10.1093/bioinformatics/btx292
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- Article
Microbial production of the plant flavanone hesperetin from caffeic acid.
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- BMC Research Notes, 2023, v. 16, n. 1, p. 1, doi. 10.1186/s13104-023-06620-8
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- Article
Pathogenesis of peroxisomal deficiency disorders (Zellweger syndrome) may be mediated by misregulation of the GABAergic system via the dishpan binding inhibitor.
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- BMC Pediatrics, 2004, v. 4, p. 1
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- Article
RANK-BASED METHODS AS A NON-PARAMETRIC ALTERNATIVE OF THE T-STATISTIC FOR THE ANALYSIS OF BIOLOGICAL MICROARRAY DATA.
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- Journal of Bioinformatics & Computational Biology, 2005, v. 3, n. 5, p. 1171, doi. 10.1142/S0219720005001442
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- Article
Metabolomic analysis of a synthetic metabolic switch in Streptomyces coelicolor A3(2).
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- Proteomics, 2011, v. 11, n. 24, p. 4622, doi. 10.1002/pmic.201100254
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- Article
Increasing the mass accuracy of high-resolution LC-MS data using background ions - a case study on the LTQ-Orbitrap.
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- Proteomics, 2008, v. 8, n. 22, p. 4647, doi. 10.1002/pmic.200800314
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- Article
Analyses of intricate kinetics of the serum proteome during and after colon surgery by protein expression time series.
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- Proteomics, 2007, v. 7, n. 17, p. 3219, doi. 10.1002/pmic.200601047
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- Article
Explicit consideration of topological and parameter uncertainty gives new insights into a well-established model of glycolysis.
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- FEBS Journal, 2013, v. 280, n. 18, p. 4640, doi. 10.1111/febs.12436
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- Article
Pep2Path: Automated Mass Spectrometry-Guided Genome Mining of Peptidic Natural Products.
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- PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003822
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- Article
Handling Uncertainty in Dynamic Models: The Pentose Phosphate Pathway in <i>Trypanosoma brucei</i>.
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- PLoS Computational Biology, 2013, v. 9, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003371
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- Article
Dynamic Modelling under Uncertainty: The Case of Trypanosoma brucei Energy Metabolism.
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- PLoS Computational Biology, 2012, v. 8, n. 1, p. 1
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- Article
South European spiders from the Duffey collection in the Manchester Museum (Arachnida: Araneae).
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- Arachnology, 2020, v. 18, n. 4, p. 333, doi. 10.13156/arac.2020.18.4.333
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- Article
A structured approach for the engineering of biochemical network models, illustrated for signalling pathways.
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- Briefings in Bioinformatics, 2008, v. 9, n. 5, p. 404, doi. 10.1093/bib/bbn026
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- Article
Metabolomics to Unveil and Understand Phenotypic Diversity between Pathogen Populations.
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- PLoS Neglected Tropical Diseases, 2010, v. 4, n. 11, p. 1, doi. 10.1371/journal.pntd.0000904
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- Article
Metabolomics to Unveil and Understand Phenotypic Diversity between Pathogen Populations.
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- PLoS Neglected Tropical Diseases, 2010, v. 4, n. 11, p. 1, doi. 10.1371/journal.pntd.0000904
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- Article
Exploring novel bacterial terpene synthases.
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- PLoS ONE, 2020, v. 15, n. 4, p. 1, doi. 10.1371/journal.pone.0232220
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- Article
LC-MS-based absolute metabolite quantification: application to metabolic flux measurement in trypanosomes.
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- Metabolomics, 2015, v. 11, n. 6, p. 1721, doi. 10.1007/s11306-015-0827-2
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- Article
Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics.
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- Metabolomics, 2013, v. 9, p. 44, doi. 10.1007/s11306-012-0434-4
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- Article
Separating the wheat from the chaff: a prioritisation pipeline for the analysis of metabolomics datasets.
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- Metabolomics, 2012, v. 8, p. 29, doi. 10.1007/s11306-011-0341-0
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- Article
The exact probability distribution of the rank product statistics for replicated experiments
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- FEBS Letters, 2013, v. 587, n. 6, p. 677, doi. 10.1016/j.febslet.2013.01.037
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- Article
Metabolomics methods for the synthetic biology of secondary metabolism.
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- FEBS Letters, 2012, v. 586, n. 15, p. 2177, doi. 10.1016/j.febslet.2012.02.008
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- Article
Comparative genome-scale metabolic modeling of actinomycetes: The topology of essential core metabolism
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- FEBS Letters, 2011, v. 585, n. 14, p. 2389, doi. 10.1016/j.febslet.2011.06.014
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- Article
Current challenges in quantitative modeling of epidermal growth factor signaling
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- FEBS Letters, 2005, v. 579, n. 28, p. 6289, doi. 10.1016/j.febslet.2005.10.034
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- Article
Dynamics of the human skin mediator lipidome in response to dietary ω-3 fatty acid supplementation.
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- FASEB Journal, 2019, v. 33, n. 11, p. 13014, doi. 10.1096/fj.201901501R
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- Article
Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor.
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- BMC Genomics, 2010, v. 11, p. 202, doi. 10.1186/1471-2164-11-202
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- Article
Predicting protein function by machine learning on amino acid sequences -- a critical evaluation.
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- BMC Genomics, 2007, v. 8, p. 78, doi. 10.1186/1471-2164-8-78
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- Article
Expression Quantitative Trait Loci Are Highly Sensitive to Cellular Differentiation State.
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- PLoS Genetics, 2009, v. 5, n. 10, p. 1, doi. 10.1371/journal.pgen.1000692
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- Article