Works matching AU Penny, David

Results: 110

Darwin's Theory of Descent with Modification, versus the Biblical Tree of Life.

Published in:

2011

By:

Penny, David

Publication type:

Opinion

Robert W. Mowry, M.D. Some thoughts about his contributions to the Biological Stain Commission.

Published in:

2009

By:

Penny, David P.

Publication type:

Obituary

Intron length distributions and gene prediction.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 14, p. 4737, doi. 10.1093/nar/gkm281

By:

Roy, Scott William;
Penny, David

Publication type:

Article

Combined experimental and computational approach to identify non-protein-coding RNAs in the deep-branching eukaryote Giardia intestinalis.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 14, p. 4619, doi. 10.1093/nar/gkm474

By:

Chen, Xiaowei (Sylvia);
Rozhdestvensky, Timofey S.;
Collins, Lesley J.;
Schmitz, Jürgen;
Penny, David

Publication type:

Article

Distinct patterns of evolution between respiratory syncytial virus subgroups A and B From New Zealand isolates collected over thirty‐seven yearsJ.W. Matheson and F.J. Rich contributed equally to this work.

Published in:

Journal of Medical Virology, 2006, v. 78, n. 10, p. 1354

By:

James W. Matheson;
Fenella J. Rich;
Catherine Cohet;
Keith Grimwood;
Q. Sue Huang;
David Penny;
Michael D. Hendy;
Joanna R. Kirman

Publication type:

Article

Does the Ribosome Challenge our Understanding of the RNA World?

Published in:

2016

By:

Poole, Anthony;
Jeffares, Daniel;
Hoeppner, Marc;
Penny, David

Publication type:

Letter

The Relative Ages of Eukaryotes and Akaryotes.

Published in:

Journal of Molecular Evolution, 2014, v. 79, n. 5/6, p. 228, doi. 10.1007/s00239-014-9643-y

By:

Penny, David;
Collins, Lesley;
Daly, Toni;
Cox, Simon

Publication type:

Article

An Overview of the Introns-First Theory.

Published in:

Journal of Molecular Evolution, 2009, v. 69, n. 5, p. 527, doi. 10.1007/s00239-009-9279-5

By:

Penny, David;
Hoeppner, Marc P.;
Poole, Anthony M.;
Jeffares, Daniel C.

Publication type:

Article

Measuring Fit of Sequence Data to Phylogenetic Model: Gain of Power Using Marginal Tests.

Published in:

Journal of Molecular Evolution, 2009, v. 69, n. 4, p. 289, doi. 10.1007/s00239-009-9268-8

By:

Waddell, Peter J.;
Ota, Rissa;
Penny, David

Publication type:

Article

Estimating Changes in Mutational Mechanisms of Evolution.

Published in:

Journal of Molecular Evolution, 2003, v. 57, p. S233, doi. 10.1007/s00239-003-0032-1

By:

Ota, Rissa;
Penny, David

Publication type:

Article

Mathematical Elegance with Biochemical Realism: The Covarion Model of Molecular Evolution.

Published in:

Journal of Molecular Evolution, 2001, v. 53, n. 6, p. 711, doi. 10.1007/s002390010258

By:

Penny, David;
McComish, Bennet J.;
Charleston, Michael A.;
Hendy, Michael D.

Publication type:

Article

RNA Folding Argues Against a Hot-Start Origin of Life.

Published in:

Journal of Molecular Evolution, 2000, v. 51, n. 4, p. 416, doi. 10.1007/s002390010104

By:

Moulton, Vincent;
Gardner, Paul P.;
Pointon, Robert F.;
Creamer, Lawrence K.;
Jameson, Geoffrey B.;
Penny, David

Publication type:

Article

Use of RNA Secondary Structure for Studying the Evolution of RNase P and RNase MRP.

Published in:

Journal of Molecular Evolution, 2000, v. 51, n. 3, p. 194, doi. 10.1007/s002390010081

By:

Collins, Lesley J.;
Moulton, Vincent;
Penny, David

Publication type:

Article

The Power of Relative Rates Tests Depends on the Data.

Published in:

Journal of Molecular Evolution, 2000, v. 50, n. 3, p. 296, doi. 10.1007/s002399910034

By:

Bromham, Lindell;
Penny, David;
Rambaut, Andrew;
Hendy, Michael D.

Publication type:

Article

Analyses of the mitochondrial genome of Leiopelma hochstetteri argues against the full drowning of New Zealand.

Published in:

Journal of Biogeography, 2015, v. 42, n. 6, p. 1066, doi. 10.1111/jbi.12482

By:

Carr, Louise M.;
(Trish) McLenachan, P. A.;
Waddell, Peter J.;
Gemmell, Neil J.;
Penny, David;
Ebach, Malte

Publication type:

Article

Evidence for the recent dispersal of Sophora (Leguminosae) around the Southern Oceans: molecular data.

Published in:

Journal of Biogeography, 1999, v. 26, n. 3, p. 565, doi. 10.1046/j.1365-2699.1999.00302.x

By:

Hurr, Kathryn A;
Lockhart, Peter J;
Heenan, Peter B;
Penny, David

Publication type:

Article

Does endo-symbiosis explain the origin of the nucleus?

Published in:

Nature Cell Biology, 2001, v. 3, n. 8, p. E173, doi. 10.1038/35087102

By:

Poole, Anthony;
Penny, David

Publication type:

Article

Evolution of the Chlorophyta: Insights from chloroplast phylogenomic analyses.

Published in:

Journal of Systematics & Evolution, 2017, v. 55, n. 4, p. 322, doi. 10.1111/jse.12248

By:

Fang, Ling;
Leliaert, Frederik;
Zhang, Zhen‐Hua;
Penny, David;
Zhong, Bo‐Jian

Publication type:

Article

New Zealand Passerines Help Clarify the Diversification of Major Songbird Lineages during the Oligocene.

Published in:

Genome Biology & Evolution, 2015, v. 7, n. 11, p. 2983, doi. 10.1093/gbe/evv196

By:

Gibb, Gillian C.;
England, Ryan;
Hartig, Gerrit;
McLenachan, Patricia A. (Trish);
Taylor Smith, Briar L.;
McComish, Bennet J.;
Cooper, Alan;
Penny, David

Publication type:

Article

Epigenetics, Darwin, and Lamarck.

Published in:

Genome Biology & Evolution, 2015, v. 7, n. 6, p. 1758, doi. 10.1093/gbe/evv107

By:

Penny, David

Publication type:

Article

Two New Fern Chloroplasts and Decelerated Evolution Linked to the Long Generation Time in Tree Ferns.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 5, p. 1166, doi. 10.1093/gbe/evu087

By:

Zhong, Bojian;
Fong, Richard;
Collins, Lesley J.;
McLenachan, Patricia A.;
Penny, David

Publication type:

Article

Phylogenetic Position of Avian Nocturnal and Diurnal Raptors.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 2, p. 326, doi. 10.1093/gbe/evu016

By:

Mahmood, Muhammad Tariq;
McLenachan, Patricia A.;
Gibb, Gillian C.;
Penny, David

Publication type:

Article

In Silico Resurrection of the Major Vault Protein Suggests It Is Ancestral in Modern Eukaryotes.

Published in:

Genome Biology & Evolution, 2013, v. 5, n. 8, p. 1567, doi. 10.1093/gbe/evt113

By:

Daly, Toni K.;
Sutherland-Smith, Andrew J.;
Penny, David

Publication type:

Article

Rewriting Evolution—“Been There, Done That”.

Published in:

Genome Biology & Evolution, 2013, v. 5, n. 5, p. 819, doi. 10.1093/gbe/evt048

By:

Penny, David

Publication type:

Article

Missing Data and Influential Sites: Choice of Sites for Phylogenetic Analysis Can Be As Important As Taxon Sampling and Model Choice.

Published in:

Genome Biology & Evolution, 2013, v. 5, n. 4, p. 681, doi. 10.1093/gbe/evt032

By:

Shavit Grievink, Liat;
Penny, David;
Holland, Barbara R.

Publication type:

Article

Beyond BLASTing: Tertiary and Quaternary Structure Analysis Helps Identify Major Vault Proteins.

Published in:

Genome Biology & Evolution, 2013, v. 5, n. 1, p. 217, doi. 10.1093/gbe/evs135

By:

Daly, Toni K.;
Sutherland-Smith, Andrew J.;
Penny, David

Publication type:

Article

Systematic Error in Seed Plant Phylogenomics.

Published in:

Genome Biology & Evolution, 2011, v. 3, p. 1340, doi. 10.1093/gbe/evr105

By:

Bojian Zhong;
Deusch, Oliver;
Goremykin, Vadim V.;
Penny, David;
Biggs, Patrick J.;
Atherton, Robin A.;
Nikiforova, Svetlana V.;
Lockhart, Peter James

Publication type:

Article

High Throughput Genome-Wide Survey of Small RNAs from the Parasitic Protists Giardia intestinalis and Trichomonas vaginalis.

Published in:

Genome Biology & Evolution, 2009, v. 1, p. 165, doi. 10.1093/gbe/evp017

By:

Xiaowei Chen;
Collins, Lesley J.;
Biggs, Patrick J.;
Penny, David

Publication type:

Article

Root Strength in Some Populus and Salix Clones.

Published in:

New Zealand Journal of Botany, 1975, v. 13, n. 3, p. 333, doi. 10.1080/0028825X.1975.10430330

By:

Hathaway, R. L.;
Penny, David

Publication type:

Article

Studies on the mechanism of cell elongation of Lupin hypocotyl segments.

Published in:

New Zealand Journal of Botany, 1972, v. 10, n. 1, p. 97, doi. 10.1080/0028825X.1972.10430215

By:

Penny, David;
Miller, Kathryn F.;
Penny, Pauline

Publication type:

Article

Bird evolution: testing the Metaves clade with six new mitochondrial genomes.

Published in:

BMC Evolutionary Biology, 2008, v. 8, p. 1, doi. 10.1186/1471-2148-8-20

By:

Morgan-Richards, Mary;
Trewick, Steve A.;
Bartosch-Härlid, Anna;
Kardailsky, Olga;
Phillips, Matthew J.;
McLenachan, Patricia A.;
Penny, David

Publication type:

Article

Origins of life: Common ancestry put to the test.

Published in:

Nature, 2010, v. 465, n. 7295, p. 168, doi. 10.1038/465168a

By:

Steel, Mike;
Penny, David

Publication type:

Article

Why the resistance?

Published in:

2006

By:

Penny, David

Publication type:

Book Review

Biology and 'physics envy'

Published in:

2005

By:

Penny, David

Publication type:

Book Review

Life, the universe and everything.

Published in:

2004

By:

Penny, David

Publication type:

Book Review

A candle in the dark.

Published in:

EMBO Reports, 2002, v. 3, n. 2, p. 114, doi. 10.1093/embo-reports/kvf045

By:

Penny, David

Publication type:

Article

That was the name thereof.

Published in:

2001

By:

Penny, David

Publication type:

Book Review

Throwim way leg.

Published in:

2000

By:

Penny, David

Publication type:

Book

OPINION: Confounded cytosine! Tinkering and the evolution of DNA.

Published in:

Nature Reviews Molecular Cell Biology, 2001, v. 2, n. 2, p. 147, doi. 10.1038/35052091

By:

Poole, Anthony;
Penny, David;
Sjöberg, Britt-Marie

Publication type:

Article

Effects of Pressure and pH on the Hydrolysis of Cytosine: Implications for Nucleotide Stability around Deep‐Sea Black Smokers.

Published in:

ChemBioChem, 2018, v. 19, n. 6, p. 540, doi. 10.1002/cbic.201700555

By:

Lepper, Christopher P.;
Williams, Martin A. K.;
Penny, David;
Edwards, Patrick J. B.;
Jameson, Geoffrey B.

Publication type:

Article

Tissue specificity of acid action in rapid elongation responses of lupin hypocotyls.

Published in:

Physiologia Plantarum, 1986, v. 67, n. 1, p. 61, doi. 10.1111/j.1399-3054.1986.tb01263.x

By:

Pearce, David;
Penny, David

Publication type:

Article

Response to Dagan and Martin.

Published in:

2007

By:

Poole, Anthony M.;
Penny, David

Publication type:

Letter

Evaluating hypotheses for the origin of eukaryotes.

Published in:

BioEssays, 2007, v. 29, n. 1, p. 74, doi. 10.1002/bies.20516

By:

Poole, Anthony M.;
Penny, David

Publication type:

Article

Charles Darwin as a theoretical biologist in the mechanistic tradition.

Published in:

Trends in Evolutionary Biology, 2009, v. 1, p. 1, doi. 10.4081/eb.2009.e1

By:

Penny, David

Publication type:

Article

Graph theory, evolutionary trees and classification.

Published in:

Zoological Journal of the Linnean Society, 1982, v. 74, n. 3, p. 277, doi. 10.1111/j.1096-3642.1982.tb01152.x

By:

PENNY, DAVID

Publication type:

Article

The Modern RNP World of Eukaryotes.

Published in:

Journal of Heredity, 2009, v. 100, n. 5, p. 597, doi. 10.1093/jhered/esp064

By:

Collins, Lesley J.;
Kurland, Charles G.;
Biggs, Patrick;
Penny, David

Publication type:

Article

Gaps: An Elusive Source of Phylogenetic Information.

Published in:

2012

By:

Saurabh, Kumar;
Holland, Barbara R.;
Gibb, Gillian C.;
Penny, David

Publication type:

Opinion

Evolution: A View from the 21st Century.

Published in:

2012

By:

Penny, David

Publication type:

Book Review

Phylogenetic Tree Reconstruction Accuracy and Model Fit when Proportions of Variable Sites Change across the Tree.

Published in:

Systematic Biology, 2010, v. 59, n. 3, p. 288, doi. 10.1093/sysbio/syq003

By:

GRIEVINK, LIAT SHAVIT;
PENNY, DAVID;
HENDY, MICHAEL D.;
HOLLAND, BARBARA R.

Publication type:

Article

Tinamous and Moa Flock Together: Mitochondrial Genome Sequence Analysis Reveals Independent Losses of Flight among Ratites.

Published in:

Systematic Biology, 2010, v. 59, n. 1, p. 90, doi. 10.1093/sysbio/syp079

By:

PHILLIPS, MATTHEW J.;
GIBB, GILLIAN C.;
CRIMP, ELIZABETH A.;
PENNY, DAVID

Publication type:

Article