Works matching Protein structure

Results: 5000

Building maps of protein structure spaces in template-free protein structure prediction.

Published in:

Journal of Bioinformatics & Computational Biology, 2019, v. 17, n. 6, p. N.PAG, doi. 10.1142/S0219720019400134

By:

Zaman, Ahmed Bin;
Shehu, Amarda

Publication type:

Article

Principal component analysis in protein tertiary structure prediction.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 2, p. -1, doi. 10.1142/S0219720018500051

By:

Álvarez, Óscar;
Fernández-Martínez, Juan Luis;
Fernández-Brillet, Celia;
Cernea, Ana;
Fernández-Muñiz, Zulima;
Kloczkowski, Andrzej

Publication type:

Article

PROTEIN STRUCTURE–STRUCTURE ALIGNMENT WITH DISCRETE FRÉCHET DISTANCE.

Published in:

Journal of Bioinformatics & Computational Biology, 2008, v. 6, n. 1, p. 51, doi. 10.1142/S0219720008003278

By:

MINGHUI JIANG;
YING XU;
BINHAI ZHU

Publication type:

Article

REFINEMENT OF NMR-DETERMINED PROTEIN STRUCTURES WITH DATABASE DERIVED DISTANCE CONSTRAINTS.

Published in:

Journal of Bioinformatics & Computational Biology, 2005, v. 3, n. 6, p. 1315, doi. 10.1142/S0219720005001582

By:

CUI, FENG;
JERNIGAN, ROBERT;
WU, ZHIJUN

Publication type:

Article

АНАЛІЗ БІЛКОВИХ СТРУКТУР ПЛАЗМИ КРОВІ ПРИ ГЛІОМАХ З ВИКОРИСТАННЯМ БАЕСОВИХ ПРОЦЕДУР РОЗПІЗНАВАННЯ НА МОДЕЛЯХ ЛАНЦЮГІВ МАРКОВА.

Published in:

Cybernetics & Systems Analysis / Kibernetiki i Sistemnyj Analiz, 2022, v. 58, n. 4, p. 32

By:

ГУПАЛ, А. М.;
ТАРАСОВ, А. Л.

Publication type:

Article

БАЕСОВI ПРОЦЕДУРИ РОЗПIЗНАВАННЯ ДЛЯ АНАЛI3У БЁЛКОВИХ СТРУТКУР ПЛАЗМИ KPOBI ЗА ПОКАЗНИКАМИ ЛАЗЕРНОГО СПЕКТРОГРАФА У ПАЦIЕНТ1В 3 ПУХЛИНАМИ ГОЛОВНОГО МОЗКУ.

Published in:

Cybernetics & Systems Analysis / Kibernetiki i Sistemnyj Analiz, 2022, v. 58, n. 3, p. 42

By:

ГУПАЛ, А. М.;
ТАРАСОВ, А. Л.

Publication type:

Article

A FAST PROTEIN STRUCTURE RETRIEVAL SYSTEM USING IMAGE-BASED DISTANCE MATRICES AND MULTIDIMENSIONAL INDEX.

Published in:

International Journal of Software Engineering & Knowledge Engineering, 2005, v. 15, n. 3, p. 527, doi. 10.1142/S0218194005002439

By:

CHI, PIN-HAO;
SCOTT, GRANT;
SHYU, CHI-REN

Publication type:

Article

利用粒子群算法在菱形网格上预测蛋白质结构.

Published in:

Chinese Journal of Bioinformatics, 2017, v. 15, n. 2, p. 105, doi. 10.3969/j.issn.1672-5565.20160702001

By:

陶凤英;
郭雨珍

Publication type:

Article

蛋白质二级结构指定.

Published in:

Chinese Journal of Bioinformatics, 2016, v. 14, n. 3, p. 181, doi. 10.3969/j.issn.1672-5565.2016.03.09

By:

曹晨;
马堃

Publication type:

Article

A Deep Learning Approach for Prediction of Protein Secondary Structure.

Published in:

Computers, Materials & Continua, 2022, v. 72, n. 2, p. 3705, doi. 10.32604/cmc.2022.026408

By:

Zubair, Muhammad;
Hanif, Muhammad Kashif;
Alabdulkreem, Eatedal;
Ghadi, Yazeed;
Khan, Muhammad Irfan;
Sarwar, Muhammad Umer;
Hanif, Ayesha

Publication type:

Article

A Systematic Analysis of the Structures of Heterologously Expressed Proteins and Those from Their Native Hosts in the RCSB PDB Archive.

Published in:

PLoS ONE, 2016, v. 11, n. 8, p. 1, doi. 10.1371/journal.pone.0161254

By:

Zhou, Ren-Bin;
Lu, Hui-Meng;
Liu, Jie;
Shi, Jian-Yu;
Zhu, Jing;
Lu, Qin-Qin;
Yin, Da-Chuan

Publication type:

Article

Addressing the Role of Conformational Diversity in Protein Structure Prediction.

Published in:

PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0154923

By:

Palopoli, Nicolas;
Monzon, Alexander Miguel;
Parisi, Gustavo;
Fornasari, Maria Silvina

Publication type:

Article

CASP11 – An Evaluation of a Modular BCL::Fold-Based Protein Structure Prediction Pipeline.

Published in:

PLoS ONE, 2016, v. 11, n. 4, p. 1, doi. 10.1371/journal.pone.0152517

By:

Fischer, Axel W.;
Heinze, Sten;
Putnam, Daniel K.;
Li, Bian;
Pino, James C.;
Xia, Yan;
Lopez, Carlos F.;
Meiler, Jens

Publication type:

Article

Uncovering New Pathogen–Host Protein–Protein Interactions by Pairwise Structure Similarity.

Published in:

PLoS ONE, 2016, v. 11, n. 1, p. 1, doi. 10.1371/journal.pone.0147612

By:

Cui, Tao;
Li, Weihui;
Liu, Lei;
Huang, Qiaoyun;
He, Zheng-Guo

Publication type:

Article

Protein Structure Idealization: How accurately is it possible to model protein structures with dihedral angles?

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-5

By:

Xuefeng Cui;
Shuai Cheng Li;
Dongbo Bu;
Alipanahi, Babak;
Ming Li

Publication type:

Article

AlphaFold による蛋白質立体構造予測から機能予測へ.

Published in:

2024

By:

富井健太郎

Publication type:

Product Review

Changes of Protein Structure and Water Phase Distribution of Prepared Chicken Steak under Different Cooking Methods.

Published in:

Modern Food Science & Technology, 2022, v. 38, n. 11, p. 234, doi. 10.13982/j.mfst.1673-9078.2022.11.1411

By:

LI Meiying;
GAO Shenyang;
LI Lin;
DAI Yuanyuan;
WANG Liucen;
GUO Ye;
ZHA Enhui

Publication type:

Article

SOV_refine: A further refined definition of segment overlap score and its significance for protein structure similarity.

Published in:

Source Code for Biology & Medicine, 2018, v. 13, n. 1, p. N.PAG

By:

Liu, Tong;
Wang, Zheng

Publication type:

Article

ProteinNet: a standardized data set for machine learning of protein structure.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2932-0

By:

AlQuraishi, Mohammed

Publication type:

Article

干燥对挂面蛋白质结构及产品特性的影响.

Published in:

Journal of Chinese Institute of Food Science & Technology / Zhongguo Shipin Xuebao, 2021, v. 21, n. 6, p. 360, doi. 10.16429/j.1009-7848.2021.06.042

By:

张影全;
王远;
郭波莉;
张波;
魏益民;
张国权

Publication type:

Article

Evolved Cellular Automata for Protein Secondary Structure Prediction Imitate the Determinants for Folding Observed in Nature.

Published in:

In Silico Biology, 2007, v. 7, n. 1, p. 87, doi. 10.3233/isb-00277

By:

Chopra, Paras;
Bender, Andreas

Publication type:

Article

Bayesian Model of Protein Primary Sequence for Secondary Structure Prediction.

Published in:

PLoS ONE, 2014, v. 9, n. 10, p. 1, doi. 10.1371/journal.pone.0109832

By:

Li, Qiwei;
Dahl, David B.;
Vannucci, Marina;
Hyun Joo;
Tsai, Jerry W.

Publication type:

Article

Atomic Resolution Structure of a Protein Prepared by Non-Enzymatic His-Tag Removal. Crystallographic and NMR Study of GmSPI-2 Inhibitor.

Published in:

PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0106936

By:

Kopera, Edyta;
Bal, Wojciech;
Lenarčič Živkovič, Martina;
Dvornyk, Angela;
Kludkiewicz, Barbara;
Grzelak, Krystyna;
Zhukov, Igor;
Zagórski-Ostoja, Włodzimierz;
Jaskolski, Mariusz;
Krzywda, Szymon

Publication type:

Article

Predicting DNA-Binding Proteins and Binding Residues by Complex Structure Prediction and Application to Human Proteome.

Published in:

PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0096694

By:

Zhao, Huiying;
Wang, Jihua;
Zhou, Yaoqi;
Yang, Yuedong

Publication type:

Article

Assigning secondary structure in proteins using AI.

Published in:

Journal of Molecular Modeling, 2021, v. 27, n. 9, p. 1, doi. 10.1007/s00894-021-04825-x

By:

Antony, Jisna Vellara;
Madhu, Prayagh;
Balakrishnan, Jayaraj Pottekkattuvalappil;
Yadav, Hemant

Publication type:

Article

A new clustering and nomenclature for beta turns derived from high-resolution protein structures.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006844

By:

Shapovalov, Maxim;
Vucetic, Slobodan;
Jr.Dunbrack, Roland L.

Publication type:

Article

母乳、牛乳与主要小品种乳蛋白质组成及乳清蛋白二级结构比较.

Published in:

Journal of Food Safety & Quality, 2022, v. 13, n. 15, p. 4779

By:

张永金;
胡艳红;
葛武鹏;
丁一;
何锐;
袁亚娟;
冶秀云;
邱亮

Publication type:

Article

鳕鱼皮的添加对鱼糜凝胶特性及其蛋白质结构的影响.

Published in:

Journal of Food Safety & Quality, 2022, v. 13, n. 5, p. 1597

By:

逄昕雨;
赵志康;
叶张靖;
刘静宜;
袁家琦;
李鸿轩;
冯本昊;
赵慧;
卢航;
胡建恩

Publication type:

Article

단백질 이차 구조 예측을 위한 합성곱 신경망의 구조.

Published in:

Journal of the Korea Institute of Information & Communication Engineering, 2018, v. 22, n. 5, p. 728, doi. 10.6109/jkiice.2018.22.4.728

By:

지상문

Publication type:

Article

Prediction of disease-associated mutations in the transmembrane regions of proteins with known 3D structure.

Published in:

PLoS ONE, 2019, v. 14, n. 7, p. 1, doi. 10.1371/journal.pone.0219452

By:

Popov, Petr;
Bizin, Ilya;
Gromiha, Michael;
A, Kulandaisamy;
Frishman, Dmitrij

Publication type:

Article

Bhageerath-Targeting the near impossible: Pushing the frontiers of atomic models for protein tertiary structure prediction.

Published in:

Journal of Chemical Sciences, 2012, v. 124, n. 1, p. 83, doi. 10.1007/s12039-011-0189-x

By:

JAYARAM, B;
DHINGRA, PRIYANKA;
LAKHANI, BHARAT;
SHEKHAR, SHASHANK

Publication type:

Article

Students' understanding of primary and secondary protein structure: Drawing secondary protein structure reveals student understanding better than simple recognition of structures.

Published in:

Biochemistry & Molecular Biology Education, 2013, v. 41, n. 6, p. 369, doi. 10.1002/bmb.20719

By:

Harle, Marissa;
Towns, Marcy H.

Publication type:

Article

Artificial intelligence in fusion protein three‐dimensional structure prediction: Review and perspective.

Published in:

Clinical & Translational Medicine, 2024, v. 14, n. 8, p. 1, doi. 10.1002/ctm2.1789

By:

Kumar, Himansu;
Kim, Pora

Publication type:

Article

Repository of Enriched Structures of Proteins Involved in the Red Blood Cell Environment (RESPIRE).

Published in:

PLoS ONE, 2019, v. 14, n. 2, p. 1, doi. 10.1371/journal.pone.0211043

By:

Téletchéa, S.;
Santuz, H.;
Léonard, S.;
Etchebest, C.

Publication type:

Article

DeepCDpred: Inter-residue distance and contact prediction for improved prediction of protein structure.

Published in:

PLoS ONE, 2019, v. 14, n. 01, p. 1, doi. 10.1371/journal.pone.0205214

By:

Ji, Shuangxi;
Oruç, Tuğçe;
Mead, Liam;
Rehman, Muhammad Fayyaz;
Thomas, Christopher Morton;
Butterworth, Sam;
Winn, Peter James

Publication type:

Article

De novo protein structure prediction using ultra-fast molecular dynamics simulation.

Published in:

PLoS ONE, 2018, v. 13, n. 11, p. 1, doi. 10.1371/journal.pone.0205819

By:

Cheung, Ngaam J.;
Yu, Wookyung

Publication type:

Article

Characterizing the relation of functional and Early Folding Residues in protein structures using the example of aminoacyl-tRNA synthetases.

Published in:

PLoS ONE, 2018, v. 13, n. 10, p. 1, doi. 10.1371/journal.pone.0206369

By:

Bittrich, Sebastian;
Schroeder, Michael;
Labudde, Dirk

Publication type:

Article

Multi-criteria protein structure comparison and structural similarities analysis using pyMCPSC.

Published in:

PLoS ONE, 2018, v. 13, n. 10, p. 1, doi. 10.1371/journal.pone.0204587

By:

Sharma, Anuj;
Manolakos, Elias S.

Publication type:

Article

Investigation of protein quaternary structure via stoichiometry and symmetry ınformation.

Published in:

PLoS ONE, 2018, v. 13, n. 6, p. 1, doi. 10.1371/journal.pone.0197176

By:

Korkmaz, Selcuk;
Duarte, Jose M.;
Prlić, Andreas;
Goksuluk, Dincer;
Zararsiz, Gokmen;
Saracbasi, Osman;
Burley, Stephen K.;
Rose, Peter W.

Publication type:

Article

Benchmarking Inverse Statistical Approaches for Protein Structure and Design with Exactly Solvable Models.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004889

By:

Jacquin, Hugo;
Gilson, Amy;
Shakhnovich, Eugene;
Cocco, Simona;
Monasson, Rémi

Publication type:

Article

β-葡聚糖酶对高燕麦含量面团性质与蛋白结构的影响.

Published in:

Science & Technology of Cereals, Oils & Foods, 2022, v. 30, n. 2, p. 41, doi. 10.16210/j.cnki.1007-7561.2022.02.006

By:

钱海峰;
潘琪锋;
李言;
王立;
樊铭聪

Publication type:

Article

基于片段组装的蛋白质结构预测方法综述.

Published in:

Journal of Data Acquisition & Processing / Shu Ju Cai Ji Yu Chu Li, 2021, v. 36, n. 4, p. 629, doi. 10.16337/j.1004-9037.2021.04.001

By:

张贵军;
刘俊;
赵凯龙

Publication type:

Article

Protein structure prediction via deep learning: an in-depth review.

Published in:

Frontiers in Pharmacology, 2025, p. 1, doi. 10.3389/fphar.2025.1498662

By:

Meng, Yajie;
Zhang, Zhuang;
Zhou, Chang;
Tang, Xianfang;
Hu, Xinrong;
Tian, Geng;
Yang, Jialiang;
Yao, Yuhua

Publication type:

Article

Protein structure prediction via deep learning: an in-depth review.

Published in:

Frontiers in Pharmacology, 2025, p. 1, doi. 10.3389/fphar.2025.1498662

By:

Meng, Yajie;
Zhang, Zhuang;
Zhou, Chang;
Tang, Xianfang;
Hu, Xinrong;
Tian, Geng;
Yang, Jialiang;
Yao, Yuhua

Publication type:

Article

Global computational mutagenesis provides a critical stability framework in protein structures.

Published in:

PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0189064

By:

McCafferty, Caitlyn L.;
Sergeev, Yuri V.

Publication type:

Article

Protein asparagine deamidation prediction based on structures with machine learning methods.

Published in:

PLoS ONE, 2017, v. 12, n. 7, p. 1, doi. 10.1371/journal.pone.0181347

By:

Jia, Lei;
Sun, Yaxiong

Publication type:

Article

Dissecting structures and functions of SecA-only protein-conducting channels: ATPase, pore structure, ion channel activity, protein translocation, and interaction with SecYEG/SecDF•YajC.

Published in:

PLoS ONE, 2017, v. 12, n. 6, p. 1, doi. 10.1371/journal.pone.0178307

By:

Hsieh, Ying-hsin;
Huang, Ying-ju;
Zhang, Hao;
Liu, Qian;
Lu, Yang;
Yang, Hsiuchin;
Houghton, John;
Jiang, Chun;
Sui, Sen-Fang;
Tai, Phang C.

Publication type:

Article

A pair-conformation-dependent scoring function for evaluating 3D RNA-protein complex structures.

Published in:

PLoS ONE, 2017, v. 12, n. 3, p. 1, doi. 10.1371/journal.pone.0174662

By:

Li, Haotian;
Huang, Yangyu;
Xiao, Yi

Publication type:

Article

Impact of genetic variation on three dimensional structure and function of proteins.

Published in:

PLoS ONE, 2017, v. 12, n. 3, p. 1, doi. 10.1371/journal.pone.0171355

By:

Bhattacharya, Roshni;
Rose, Peter W.;
Burley, Stephen K.;
Prlić, Andreas

Publication type:

Article

Critical Features of Fragment Libraries for Protein Structure Prediction.

Published in:

PLoS ONE, 2017, v. 12, n. 1, p. 1, doi. 10.1371/journal.pone.0170131

By:

Trevizani, Raphael;
Custódio, Fábio Lima;
dos Santos, Karina Baptista;
Dardenne, Laurent Emmanuel

Publication type:

Article