Works matching AU Reverter, Antonio

Results: 124

Single-cell transcriptomics uncovers key immune drivers of vaccine efficacy in cattle.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11915-0

By:

Wilson, Annaleise;
Alexandre, Pâmela A.;
Brice, Aaron M.;
Hine, Brad C.;
Ingham, Aaron;
Legrand, Thibault P. R. A.;
Royle, Caroline;
Niemeyer, Dominic;
Reverter, Antonio;
Denman, Stuart E.;
Farr, Ryan J.

Publication type:

Article

A Recursive Model Approach to Include Epigenetic Effects in Genetic Evaluations Using Simulated DNA Methylation Effects.

Published in:

Journal of Animal Breeding & Genetics, 2025, v. 142, n. 5, p. 550, doi. 10.1111/jbg.12925

By:

López‐Catalina, Adrián;
Ragab, Mohamed;
Reverter, Antonio;
González‐Recio, Oscar

Publication type:

Article

Insights into thermal stress effects on performance and behavior of grazing cattle via multimodal sensor monitoring.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-13264-0

By:

Eckhardt, Regina;
Arablouei, Reza;
McCosker, Kieren;
Bishop-Hurley, Greg;
Bagnall, Neil;
Hayes, Ben;
Reverter, Antonio;
Ingham, Aaron;
Bernhardt, Heinz

Publication type:

Article

A systems biology framework integrating GWAS and RNA-seq to shed light on the molecular basis of sperm quality in swine.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00592-0

By:

Gòdia, Marta;
Reverter, Antonio;
González-Prendes, Rayner;
Ramayo-Caldas, Yuliaxis;
Castelló, Anna;
Rodríguez-Gil, Joan-Enric;
Sánchez, Armand;
Clop, Alex

Publication type:

Article

X chromosome variants are associated with male fertility traits in two bovine populations.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00563-5

By:

Fortes, Marina R. S.;
Porto-Neto, Laercio R.;
Satake, Nana;
Nguyen, Loan T.;
Freitas, Ana Claudia;
Melo, Thaise P.;
Scalez, Daiane Cristina Becker;
Hayes, Ben;
Raidan, Fernanda S. S.;
Reverter, Antonio;
Boe-Hansen, Gry B.

Publication type:

Article

Selection signatures in tropical cattle are enriched for promoter and coding regions and reveal missense mutations in the damage response gene HELB.

Published in:

Genetics Selection Evolution, 2020, v. 52, n. 1, p. 1, doi. 10.1186/s12711-020-00546-6

By:

Naval-Sánchez, Marina;
Porto-Neto, Laercio R.;
Cardoso, Diercles F.;
Hayes, Ben J.;
Daetwyler, Hans D.;
Kijas, James;
Reverter, Antonio

Publication type:

Article

Correction to: Semi-parametric estimates of population accuracy and bias of predictions of breeding values and future phenotypes using the LR method.

Published in:

2019

By:

Legarra, Andres;
Reverter, Antonio

Publication type:

Correction Notice

Across-sex genomic-assisted genetic correlations for sex-influenced traits in Brahman cattle.

Published in:

Genetics Selection Evolution, 2019, v. 51, n. 1, p. N.PAG, doi. 10.1186/s12711-019-0482-6

By:

Raidan, Fernanda S. S.;
Porto-Neto, Laercio R.;
Reverter, Antonio

Publication type:

Article

Dominance and epistatic genetic variances for litter size in pigs using genomic models.

Published in:

Genetics Selection Evolution, 2018, v. 50, n. 1, p. N.PAG, doi. 10.1186/s12711-018-0437-3

By:

Vitezica, Zulma G.;
Reverter, Antonio;
Herring, William;
Legarra, Andres

Publication type:

Article

Semi-parametric estimates of population accuracy and bias of predictions of breeding values and future phenotypes using the LR method.

Published in:

Genetics Selection Evolution, 2018, v. 50, n. 1, p. N.PAG, doi. 10.1186/s12711-018-0426-6

By:

Legarra, Andres;
Reverter, Antonio

Publication type:

Article

Network Analyses Predict Small RNAs That Might Modulate Gene Expression in the Testis and Epididymis of Bos indicus Bulls.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.610116

By:

de Lima, Andressa O.;
Afonso, Juliana;
Edson, Janette;
Marcellin, Esteban;
Palfreyman, Robin;
Porto-Neto, Laercio R.;
Reverter, Antonio;
Fortes, Marina R. S.

Publication type:

Article

Identification of Predictor Genes for Feed Efficiency in Beef Cattle by Applying Machine Learning Methods to Multi-Tissue Transcriptome Data.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.619857

By:

Chen, Weihao;
Alexandre, Pâmela A.;
Ribeiro, Gabriela;
Fukumasu, Heidge;
Sun, Wei;
Reverter, Antonio;
Li, Yutao

Publication type:

Article

Dynamics of Gene Co-expression Networks in Time-Series Data: A Case Study in Drosophila melanogaster Embryogenesis.

Published in:

Frontiers in Genetics, 2020, v. 11, p. 1, doi. 10.3389/fgene.2020.00517

By:

Lau, Li Yieng;
Reverter, Antonio;
Hudson, Nicholas J.;
Naval-Sanchez, Marina;
Fortes, Marina R. S.;
Alexandre, Pâmela A.

Publication type:

Article

Progesterone signalling in broiler skeletal muscle is associated with divergent feed efficiency.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0396-2

By:

Bottje, Walter;
Byung-Whi Kong;
Reverter, Antonio;
Waardenberg, Ashley J.;
Lassiter, Kentu;
Hudson, Nicholas J.

Publication type:

Article

Transcriptional profiling of skeletal muscle tissue from two breeds of cattle.

Published in:

Mammalian Genome, 2005, v. 16, n. 3, p. 201, doi. 10.1007/s00335-004-2419-8

By:

Yong-Hong Wang;
Byrne, Keren A.;
Reverter, Antonio;
Harper, Gregory S.;
Taniguchi, Masaaki;
McWilliam, Sean M.;
Mannen, Hideyuki;
Oyama, Kenji;
Lehnert, Sigrid A.

Publication type:

Article

The identification and validation of target genes of IGFBP3 protein in sheep skeletal muscle cells.

Published in:

Animal Biotechnology, 2023, v. 34, n. 9, p. 4580, doi. 10.1080/10495398.2023.2174875

By:

Wang, Shan;
Gu, Yifei;
Cao, Xiukai;
Ge, Ling;
He, Mingliang;
Zhang, Weibo;
Getachew, Tesfaye;
Mwacharo, Joram M.;
Haile, Aynalem;
Quan, Kai;
Li, Yutao;
Reverter, Antonio;
Sun, Wei

Publication type:

Article

Genome-centric metagenomics reveals uncharacterised microbiomes in Angus cattle.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-04919-8

By:

Legrand, Thibault P. R. A.;
Alexandre, Pâmela A.;
Wilson, Annaleise;
Farr, Ryan J.;
Reverter, Antonio;
Denman, Stuart E.

Publication type:

Article

Genome-centric metagenomics reveals uncharacterised microbiomes in Angus cattle.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-04919-8

By:

Legrand, Thibault P. R. A.;
Alexandre, Pâmela A.;
Wilson, Annaleise;
Farr, Ryan J.;
Reverter, Antonio;
Denman, Stuart E.

Publication type:

Article

Analyzing Cattle Activity Patterns with Ear Tag Accelerometer Data.

Published in:

Animals (2076-2615), 2024, v. 14, n. 2, p. 301, doi. 10.3390/ani14020301

By:

Hu, Shuwen;
Reverter, Antonio;
Arablouei, Reza;
Bishop-Hurley, Greg;
McNally, Jody;
Alvarenga, Flavio;
Ingham, Aaron

Publication type:

Article

Wagyu Feeder Check: A genomic-based tool to identify performance differences of Australian Wagyu and Wagyu crossed cattle.

Published in:

Animal Production Science, 2024, v. 64, n. 1, p. 1, doi. 10.1071/AN23246

By:

Reverter, Antonio;
Yutao Li;
Alexandre, Pâmela A.;
Dominik, Sonja;
Teseling, Carel;
van den Heuvel, Aaron;
Schutt, Karen;
McDonagh, Matt;
Porto-Neto, Laercio

Publication type:

Article

On the value of adding commercial data into the reference population of the Angus SteerSELECT genomic tool.

Published in:

Animal Production Science, 2023, v. 63, n. 10/11, p. 947, doi. 10.1071/AN22452

By:

Reverter, Antonio;
Porto-Neto, Laercio;
Hine, Brad C.;
Alexandre, Pamela A.;
Samaraweera, Malshani;
Byrne, Andrew I.;
Ingham, Aaron B.;
Duff, Christian J.

Publication type:

Article

ImmuneDEX: updated genomic estimates of genetic parameters and breeding values for Australian Angus cattle.

Published in:

Animal Production Science, 2021, v. 61, n. 17/18, p. 1919, doi. 10.1071/AN21054

By:

Reverter, Antonio;
Hine, Brad C.;
Porto-Neto, Laercio;
Alexandre, Pamela A.;
Yutao Li;
Duff, Christian J.;
Dominik, Sonja;
Ingham, Aaron B.

Publication type:

Article

Development of Angus SteerSELECT: a genomic-based tool to identify performance differences of Australian Angus steers during feedlot finishing: Phase 1 validation.

Published in:

Animal Production Science, 2021, v. 61, n. 17/18, p. 1884, doi. 10.1071/AN21051

By:

Hine, Brad C.;
Duff, Christian J.;
Byrne, Andrew;
Parnell, Peter;
Porto-Neto, Laercio;
Yutao Li;
Ingham, Aaron B.;
Reverter, Antonio

Publication type:

Article

Chromatin accessibility and regulatory vocabulary across indicine cattle tissues.

Published in:

Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02489-7

By:

Alexandre, Pâmela A.;
Naval-Sánchez, Marina;
Menzies, Moira;
Nguyen, Loan T.;
Porto-Neto, Laercio R.;
Fortes, Marina R. S.;
Reverter, Antonio

Publication type:

Article

Gonadal reproductive and metabolic proteins of male abalone Haliotis laevigata (Donovan, 1808) assessed by targeted mass spectrometry after artificial induction of spawning.

Published in:

Aquaculture Research, 2017, v. 48, n. 12, p. 6009, doi. 10.1111/are.13413

By:

Mendoza‐Porras, Omar;
Harris, James O;
Wijffels, Gene;
Reverter, Antonio;
Cook, Mathew T;
Botwright, Natasha A;
Colgrave, Michelle L

Publication type:

Article

Combining multi-OMICs information to identify key-regulator genes for pleiotropic effect on fertility and production traits in beef cattle.

Published in:

PLoS ONE, 2018, v. 13, n. 10, p. 1, doi. 10.1371/journal.pone.0205295

By:

Fonseca, Pablo Augusto de Souza;
Id-Lahoucine, Samir;
Reverter, Antonio;
Medrano, Juan F.;
Fortes, Marina S.;
Casellas, Joaquim;
Miglior, Filippo;
Brito, Luiz;
Carvalho, Maria Raquel S.;
Schenkel, Flávio S.;
Nguyen, Loan T.;
Porto-Neto, Laercio R.;
Thomas, Milton G.;
Cánovas, Angela

Publication type:

Article

Information compression exploits patterns of genome composition to discriminate populations and highlight regions of evolutionary interest.

Published in:

BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-66

By:

Hudson, Nicholas J.;
Porto-Neto, Laercio R.;
Kijas, James;
McWilliam, Sean;
Taft, Ryan J.;
Reverter, Antonio

Publication type:

Article

Genomic correlation: harnessing the benefit of combining two unrelated populations for genomic selection.

Published in:

Genetics Selection Evolution, 2015, v. 47, p. 1, doi. 10.1186/s12711-015-0162-0

By:

Porto-Neto, Laercio R.;
Barendse, William;
Henshall, John M.;
McWilliam, Sean M.;
Lehnert, Sigrid A.;
Reverter, Antonio

Publication type:

Article

Compression distance can discriminate animals by genetic profile, build relationship matrices and estimate breeding values.

Published in:

Genetics Selection Evolution, 2015, v. 47, p. 1, doi. 10.1186/s12711-015-0158-9

By:

Hudson, Nicholas J.;
Porto-Neto, Laercio;
Kijas, James W.;
Reverter, Antonio

Publication type:

Article

Non-additive genetic variation in growth, carcass and fertility traits of beef cattle.

Published in:

Genetics Selection Evolution, 2015, v. 47, p. 1, doi. 10.1186/s12711-015-0114-8

By:

Bolormaa, Sunduimijid;
Pryce, Jennie E.;
Yuandan Zhang;
Reverter, Antonio;
Barendse, William;
Hayes, Ben J.;
Goddard, Michael E.

Publication type:

Article

The extent of linkage disequilibrium in beef cattle breeds using high-density SNP genotypes.

Published in:

Genetics Selection Evolution, 2014, v. 46, p. 1, doi. 10.1186/1297-9686-46-22

By:

Porto-Neto, Laercio R.;
Kijas, James W.;
Reverter, Antonio

Publication type:

Article

Detection of quantitative trait loci in Bos indicus and Bos taurus cattle using genome-wide association studies.

Published in:

Genetics Selection Evolution, 2013, v. 45, n. October, p. 1, doi. 10.1186/1297-9686-45-43

By:

Bolormaa, Sunduimijid;
Pryce, Jennie E.;
Kemper, Kathryn E.;
Hayes, Ben J.;
Yuandan Zhang;
Tier, Bruce;
Barendse, William;
Reverter, Antonio;
Goddard, Mike E.

Publication type:

Article

Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data.

Published in:

Bioinformatics, 2010, v. 26, n. 7, p. 896, doi. 10.1093/bioinformatics/btq051

By:

Reverter, Antonio;
Hudson, Nicholas J.;
Nagaraj, Shivashankar H.;
Pérez-Enciso, Miguel;
Dalrymple, Brian P.

Publication type:

Article

PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 411, doi. 10.1093/bioinformatics/btp674

By:

Watson-Haigh, Nathan S.;
Kadarmideen, Haja N.;
Reverter, Antonio

Publication type:

Article

Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2491, doi. 10.1093/bioinformatics/btn482

By:

Antonio Reverter;
Eva K. F. Chan

Publication type:

Article

Simultaneous identification of differential gene expression and connectivity in inflammation, adipogenesis and cancer.

Published in:

Bioinformatics, 2006, v. 22, n. 19, p. 2396, doi. 10.1093/bioinformatics/btl392

By:

Reverter, Antonio;
Ingham, Aaron;
Lehnert, Sigrid A.;
Tan, Siok-Hwee;
Wang, Yonghong;
Ratnakumar, Abhirami;
Dalrymple, Brian P.

Publication type:

Article

Validation of alternative methods of data normalization in gene co-expression studies.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1112, doi. 10.1093/bioinformatics/bti124

By:

Antonio Reverter

Publication type:

Article

Weaning induced expression changes of genes associated with lactation and oestrogen signalling in the hypothalamus of postpartum cows.

Published in:

Malaysian Journal of Animal Science, 2018, v. 21, n. 2, p. 7

By:

Suhaimi, Ainu Husna M. S.;
Flatscher-Bader, Traute;
Lehnert, Sigrid A.;
Reverter, Antonio;
Chan, Eva;
Phillips, Nancy J.;
McGowan, Michael;
D'Occhio, Michael J.

Publication type:

Article

Biological Network Approach for the Identification of Regulatory Long Non-Coding RNAs Associated With Metabolic Efficiency in Cattle.

Published in:

Frontiers in Genetics, 2019, v. 10, p. 1, doi. 10.3389/fgene.2019.01130

By:

Nolte, Wietje;
Weikard, Rosemarie;
Brunner, Ronald M.;
Albrecht, Elke;
Hammon, Harald M.;
Reverter, Antonio;
Kühn, Christa

Publication type:

Article

Systems Biology Reveals NR2F6 and TGFB1 as Key Regulators of Feed Efficiency in Beef Cattle.

Published in:

Frontiers in Genetics, 2019, p. N.PAG, doi. 10.3389/fgene.2019.00230

By:

Alexandre, Pâmela A.;
Naval-Sanchez, Marina;
Porto-Neto, Laercio R.;
Ferraz, José Bento S.;
Reverter, Antonio;
Fukumasu, Heidge

Publication type:

Article

Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-017-02809-1

By:

Naval-Sanchez, Marina;
Nguyen, Quan;
McWilliam, Sean;
Porto-Neto, Laercio R.;
Tellam, Ross;
Vuocolo, Tony;
Reverter, Antonio;
Perez-Enciso, Miguel;
Brauning, Rudiger;
Clarke, Shannon;
McCulloch, Alan;
Zamani, Wahid;
Naderi, Saeid;
Rezaei, Hamid Reza;
Pompanon, Francois;
Taberlet, Pierre;
Worley, Kim C.;
Gibbs, Richard A.;
Muzny, Donna M.;
Jhangiani, Shalini N.

Publication type:

Article

Effect of CUX1 on the Proliferation of Hu Sheep Dermal Papilla Cells and on the Wnt/β-Catenin Signaling Pathway.

Published in:

Genes, 2023, v. 14, n. 2, p. 423, doi. 10.3390/genes14020423

By:

Zhou, Hui;
Huang, Sainan;
Lv, Xiaoyang;
Wang, Shanhe;
Cao, Xiukai;
Yuan, Zehu;
Getachew, Tesfaye;
Mwacharo, Joram M.;
Haile, Aynalem;
Quan, Kai;
Li, Yutao;
Reverter, Antonio;
Sun, Wei

Publication type:

Article

Genome-Wide Co-Expression Distributions as a Metric to Prioritize Genes of Functional Importance.

Published in:

Genes, 2020, v. 11, n. 10, p. 1231, doi. 10.3390/genes11101231

By:

Alexandre, Pâmela A.;
Hudson, Nicholas J.;
Lehnert, Sigrid A.;
Fortes, Marina R. S.;
Naval-Sánchez, Marina;
Nguyen, Loan T.;
Porto-Neto, Laercio R.;
Reverter, Antonio

Publication type:

Article

Exploring the Regulatory Potential of Long Non-Coding RNA in Feed Efficiency of Indicine Cattle.

Published in:

Genes, 2020, v. 11, n. 9, p. 997, doi. 10.3390/genes11090997

By:

Alexandre, Pâmela A.;
Reverter, Antonio;
Berezin, Roberta B.;
Porto-Neto, Laercio R.;
Ribeiro, Gabriela;
Santana, Miguel H. A.;
Ferraz, José Bento S.;
Fukumasu, Heidge

Publication type:

Article

Gene Networks Driving Genetic Variation in Milk and Cheese-Making Traits of Spanish Assaf Sheep.

Published in:

Genes, 2020, v. 11, n. 7, p. 715, doi. 10.3390/genes11070715

By:

Marina, Héctor;
Reverter, Antonio;
Gutiérrez-Gil, Beatriz;
Alexandre, Pâmela Almeida;
Porto-Neto, Laercio R.;
Suárez-Vega, Aroa;
Li, Yutao;
Esteban-Blanco, Cristina;
Arranz, Juan-José

Publication type:

Article

A genomics-informed, SNP association study reveals FBLN1 and FABP4 as contributing to resistance to fleece rot in Australian Merino sheep.

Published in:

BMC Veterinary Research, 2010, v. 6, p. 27, doi. 10.1186/1746-6148-6-27

By:

Smith, Wendy J. M.;
Yutao Li;
Ingham, Aaron;
Collis, Eliza;
McWilliam, Sean M.;
Dixon, Tom J.;
Norris, Belinda J.;
Mortimer, Suzanne I.;
Moore, Robert J.;
Reverter, Antonio

Publication type:

Article

Identification of immune genes and proteins involved in the response of bovine mammary tissue to Staphylococcus aureus infection.

Published in:

BMC Veterinary Research, 2008, v. 4, p. 1, doi. 10.1186/1746-6148-4-18

By:

Lutzow, Ylva C. Strandberg;
Donaldson, Laurelea;
Gray, Christian P.;
Vuocolo, Tony;
Pearson, Roger D.;
Reverter, Antonio;
Byrne, Keren A.;
Sheehy, Paul A.;
Windon, Ross;
Tellam, Ross L.

Publication type:

Article

Leveraging host-genetics and gut microbiota to determine immunocompetence in pigs.

Published in:

Animal Microbiome, 2021, v. 3, n. 1, p. 1, doi. 10.1186/s42523-021-00138-9

By:

Ramayo-Caldas, Yuliaxis;
Zingaretti, Laura M.;
Pérez-Pascual, David;
Alexandre, Pamela A.;
Reverter, Antonio;
Dalmau, Antoni;
Quintanilla, Raquel;
Ballester, Maria

Publication type:

Article

Transcriptional response to an alternative diet on liver, muscle, and rumen of beef cattle.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-63619-2

By:

Fernandes, Anna Carolina;
Reverter, Antonio;
Keogh, Kate;
Alexandre, Pâmela Almeida;
Afonso, Juliana;
Palhares, Julio Cesar Pascale;
Cardoso, Tainã Figueiredo;
Malheiros, Jessica Moraes;
Bruscadin, Jennifer Jessica;
de Oliveira, Priscila Silva Neubern;
Mourão, Gerson Barreto;
de Almeida Regitano, Luciana Correia;
Coutinho, Luiz Lehmann

Publication type:

Article

The Efficacy of Sunitinib Treatment of Renal Cancer Cells Is Associated with the Protein PHAX In Vitro.

Published in:

Biology (2079-7737), 2020, v. 9, n. 4, p. 74, doi. 10.3390/biology9040074

By:

Al-Lamki, Rafia S.;
Hudson, Nicholas J.;
Bradley, John R.;
Warren, Anne Y.;
Eisen, Tim;
Welsh, Sarah J.;
Riddick, Antony C. P.;
O'Mahony, Fiach C.;
Turnbull, Arran;
Powles, Thomas;
Reverter, Antonio;
Harrison, David J.;
Stewart, Grant D.

Publication type:

Article