Works matching AU Huddleston, John

Results: 35
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    Antigenic drift and subtype interference shape A(H3N2) epidemic dynamics in the United States.

    Published in:
    eLife, 2024, p. 1, doi. 10.7554/eLife.91849
    By:
    • Perofsky, Amanda C.;
    • Huddleston, John;
    • Hansen, Chelsea L.;
    • Barnes, John R.;
    • Rowe, Thomas;
    • Xiyan Xu;
    • Kondor, Rebecca;
    • Wentworth, David E.;
    • Lewis, Nicola;
    • Whittaker, Lynne;
    • Ermetal, Burcu;
    • Harvey, Ruth;
    • Galiano, Monica;
    • Daniels, Rodney Stuart;
    • McCauley, John W.;
    • Seiichiro Fujisaki;
    • Kazuya Nakamura;
    • Noriko Kishida;
    • Shinji Watanabe;
    • Hideki Hasegawa
    Publication type:
    Article
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    Collected Essays.

    Published in:
    2002
    By:
    • Polan, Gregory J.;
    • Huddleston, John R.;
    • Dearman, J. Andrew;
    • Cook, Edward M.;
    • Wright, John W.;
    • Walsh, Jerome T.;
    • McConville, J.G.;
    • Williams, Tyler F.;
    • Murphy, Frederick J.;
    • McGinn, Sheila E.
    Publication type:
    Book Review
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    An integrated map of structural variation in 2,504 human genomes.

    Published in:
    Nature, 2015, v. 526, n. 7571, p. 75, doi. 10.1038/nature15394
    By:
    • Sudmant, Peter H.;
    • Rausch, Tobias;
    • Gardner, Eugene J.;
    • Handsaker, Robert E.;
    • Abyzov, Alexej;
    • Huddleston, John;
    • Zhang, Yan;
    • Ye, Kai;
    • Jun, Goo;
    • Hsi-Yang Fritz, Markus;
    • Konkel, Miriam K.;
    • Malhotra, Ankit;
    • Stütz, Adrian M.;
    • Shi, Xinghua;
    • Paolo Casale, Francesco;
    • Chen, Jieming;
    • Hormozdiari, Fereydoun;
    • Dayama, Gargi;
    • Chen, Ken;
    • Malig, Maika
    Publication type:
    Article
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    Resolving the complexity of the human genome using single-molecule sequencing.

    Published in:
    Nature, 2015, v. 517, n. 7536, p. 608, doi. 10.1038/nature13907
    By:
    • Chaisson, Mark J. P.;
    • Huddleston, John;
    • Dennis, Megan Y.;
    • Sudmant, Peter H.;
    • Malig, Maika;
    • Hormozdiari, Fereydoun;
    • Antonacci, Francesca;
    • Surti, Urvashi;
    • Sandstrom, Richard;
    • Boitano, Matthew;
    • Landolin, Jane M.;
    • Stamatoyannopoulos, John A.;
    • Hunkapiller, Michael W.;
    • Korlach, Jonas;
    • Eichler, Evan E.
    Publication type:
    Article
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    Large Deletions at the SHOX Locus in the Pseudoautosomal Region Are Associated with Skeletal Atavism in Shetland Ponies.

    Published in:
    G3: Genes | Genomes | Genetics, 2016, v. 6, n. 7, p. 2213, doi. 10.1534/g3.116.029645
    By:
    • Rafati, Nima;
    • Andersson, Lisa S.;
    • Mikko, Sofia;
    • Chungang Feng;
    • Raudsepp, Terje;
    • Pettersson, Jessica;
    • Janecka, Jan;
    • Wattle, Ove;
    • Ameur, Adam;
    • Thyreen, Gunilla;
    • Eberth, John;
    • Huddleston, John;
    • Malig, Maika;
    • Bailey, Ernest;
    • Eichler, Evan E.;
    • Dalin, Göran;
    • Chowdary, Bhanu;
    • Andersson, Leif;
    • Lindgren, Gabriella;
    • Rubin, Carl-Johan
    Publication type:
    Article
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    Nextstrain: real-time tracking of pathogen evolution.

    Published in:
    Bioinformatics, 2018, v. 34, n. 23, p. 4121, doi. 10.1093/bioinformatics/bty407
    By:
    • Hadfield, James;
    • Megill, Colin;
    • Bell, Sidney M;
    • Huddleston, John;
    • Potter, Barney;
    • Callender, Charlton;
    • Sagulenko, Pavel;
    • Bedford, Trevor;
    • Neher, Richard A
    Publication type:
    Article
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    Long-read sequencing and de novo assembly of a Chinese genome.

    Published in:
    Nature Communications, 2016, v. 7, n. 6, p. 12065, doi. 10.1038/ncomms12065
    By:
    • Shi, Lingling;
    • Guo, Yunfei;
    • Dong, Chengliang;
    • Huddleston, John;
    • Yang, Hui;
    • Han, Xiaolu;
    • Fu, Aisi;
    • Li, Quan;
    • Li, Na;
    • Gong, Siyi;
    • Lintner, Katherine E.;
    • Ding, Qiong;
    • Wang, Zou;
    • Hu, Jiang;
    • Wang, Depeng;
    • Wang, Feng;
    • Wang, Lin;
    • Lyon, Gholson J.;
    • Guan, Yongtao;
    • Shen, Yufeng
    Publication type:
    Article
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    Epigenetic origin of evolutionary novel centromeres.

    Published in:
    Scientific Reports, 2017, p. 41980, doi. 10.1038/srep41980
    By:
    • Tolomeo, Doron;
    • Capozzi, Oronzo;
    • Stanyon, Roscoe R.;
    • Archidiacono, Nicoletta;
    • D'Addabbo, Pietro;
    • Catacchio, Claudia R.;
    • Purgato, Stefania;
    • Perini, Giovanni;
    • Schempp, Werner;
    • Huddleston, John;
    • Malig, Maika;
    • Eichler, Evan E.;
    • Rocchi, Mariano
    Publication type:
    Article
    29

    A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0).

    Published in:
    GigaScience, 2017, v. 6, n. 11, p. 1, doi. 10.1093/gigascience/gix098
    By:
    • Kuderna, Lukas F. K.;
    • Tomlinson, Chad;
    • Hillier, LaDeana W.;
    • Tran, Annabel;
    • Fiddes, Ian T.;
    • Armstrong, Joel;
    • Laayouni, Hafid;
    • Gordon, David;
    • Huddleston, John;
    • Perez, Raquel Garcia;
    • Povolotskaya, Inna;
    • Armero, Aitor Serres;
    • Garrido, Jéssica Gómez;
    • Ho, Daniel;
    • Ribeca, Paolo;
    • Alioto, Tyler;
    • Green, Richard E.;
    • Paten, Benedict;
    • Navarro, Arcadi;
    • Betranpetit, Jaume
    Publication type:
    Article
    30

    An evolutionary driver of interspersed segmental duplications in primates.

    Published in:
    Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02074-4
    By:
    • Cantsilieris, Stuart;
    • Sunkin, Susan M.;
    • Johnson, Matthew E.;
    • Anaclerio, Fabio;
    • Huddleston, John;
    • Baker, Carl;
    • Dougherty, Max L.;
    • Underwood, Jason G.;
    • Sulovari, Arvis;
    • Hsieh, PingHsun;
    • Mao, Yafei;
    • Catacchio, Claudia Rita;
    • Malig, Maika;
    • Welch, AnneMarie E.;
    • Sorensen, Melanie;
    • Munson, Katherine M.;
    • Jiang, Weihong;
    • Girirajan, Santhosh;
    • Ventura, Mario;
    • Lamb, Bruce T.
    Publication type:
    Article
    31

    Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution.

    Published in:
    eLife, 2020, p. 1, doi. 10.7554/eLife.60067
    By:
    • Huddleston, John;
    • Barnes, John R.;
    • Rowe, Thomas;
    • Xiyan Xu;
    • Kondor, Rebecca;
    • Wentworth, David E.;
    • Whittaker, Lynne;
    • Ermetal, Burcu;
    • Daniels, Rodney Stuart;
    • McCauley, John W.;
    • Seiichiro Fujisaki;
    • Kazuya Nakamura;
    • Noriko Kishida;
    • Shinji Watanabe;
    • Hideki Hasegawa;
    • Barr, Ian;
    • Subbarao, Kanta;
    • Barrat-Charlaix, Pierre;
    • Neher, Richard A.;
    • Bedford, Trevor
    Publication type:
    Article
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    Palindromic GOLGA8 core duplicons promote chromosome 15q13.3 microdeletion and evolutionary instability.

    Published in:
    Nature Genetics, 2014, v. 46, n. 12, p. 1293, doi. 10.1038/ng.3120
    By:
    • Antonacci, Francesca;
    • Miroballo, Mattia;
    • Dennis, Megan Y;
    • Sudmant, Peter H;
    • Malig, Maika;
    • Denman, Laura;
    • Munson, Brenton;
    • Huddleston, John;
    • Vives, Laura;
    • Raja, Archana;
    • Eichler, Evan E;
    • Steinberg, Karyn Meltz;
    • Graves, Tina A;
    • Wilson, Richard K;
    • Rosenfeld, Jill A;
    • Stuart, Andrew;
    • Tang, Joyce;
    • Amemiya, Chris T;
    • Shaffer, Lisa G
    Publication type:
    Article
    35

    Homotypic protection against influenza in a pediatric cohort in Managua, Nicaragua.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28858-9
    By:
    • Wraith, Steph;
    • Balmaseda, Angel;
    • Carrillo, Fausto Andres Bustos;
    • Kuan, Guillermina;
    • Huddleston, John;
    • Kubale, John;
    • Lopez, Roger;
    • Ojeda, Sergio;
    • Schiller, Amy;
    • Lopez, Brenda;
    • Sanchez, Nery;
    • Webby, Richard;
    • Nelson, Martha I.;
    • Harris, Eva;
    • Gordon, Aubree
    Publication type:
    Article