Works matching DE "GENE families"

Results: 5000

Analysis of gene expansion and defense-related genes in Anacardiaceae family from an evolutionary aspect.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1638044

By:

Fan, Bing-Liang;
Chen, Lin-Hua;
Chen, Ling-Ling

Publication type:

Article

Whole exome sequencing reveals pathogenic variants in CNGA3, CACNA1F, and RPGRIP1 in consanguineous Pakistani families with diverse retinal phenotypes.

Published in:

PLoS ONE, 2025, v. 20, n. 7, p. 1, doi. 10.1371/journal.pone.0327176

By:

Tareen, Jahangir Khan;
Khan, Hamid;
Ghani, Shamsul;
Khan, Saeed;
Khan, Bakhtawar;
Wu, Yurong;
Khan, Muhammad Ajmal;
Shah, Syed Shahab Ud Din;
Hussain, Abrar;
Kiyani, Mubin Mustafa;
Bashir, Shahid;
Rehman, Atta Ur;
Shabbir, Muhammad Imran;
Li, Hong-Tao

Publication type:

Article

In silico genome-wide analysis of the growth-regulating factor gene family and their expression profiling in Vitis vinifera under biotic stress.

Published in:

Cell Biochemistry & Biophysics, 2025, v. 83, n. 1, p. 1207, doi. 10.1007/s12013-024-01554-9

By:

Nazir, Nimra;
Iqbal, Azhar;
Hussain, Hadia;
Ali, Faisal;
Almaary, Khalid S.;
Aktar, Most. Nazmin;
Sajid, Muhammad;
Bourhia, Mohammed;
Salamatullah, Ahmad Mohammad

Publication type:

Article

Redundant and specific roles of individual MIR172 genes in plant development.

Published in:

PLoS Biology, 2021, v. 19, n. 2, p. 1, doi. 10.1371/journal.pbio.3001044

By:

Lian, Heng;
Wang, Long;
Ma, Ning;
Zhou, Chuan-Miao;
Han, Lin;
Zhang, Tian-Qi;
Wang, Jia-Wei

Publication type:

Article

Differential DNA Methylation of the IMMP2L Gene in Families with Maternally Inherited 7q31.1 Microdeletions is Associated with Intellectual Disability and Developmental Delay.

Published in:

Cytogenetic & Genome Research, 2021, v. 161, n. 3/4, p. 105, doi. 10.1159/000514491

By:

Vasilyev, Stanislav A.;
Skryabin, Nikolay A.;
Kashevarova, Anna A.;
Tolmacheva, Ekaterina N.;
Savchenko, Renata R.;
Vasilyeva, Oksana Yu.;
Lopatkina, Maria E.;
Zarubin, Alexei A.;
Fishman, Veniamin S.;
Belyaeva, Elena O.;
Filippova, Miroslava O.;
Shorina, Asia R.;
Maslennikov, Arkadiy B.;
Shestovskikh, Olga L.;
Gayner, Tatyana A.;
Čulić, Vida;
Vulić, Robert;
Nazarenko, Lyudmila P.;
Lebedev, Igor N.

Publication type:

Article

A revised phylogeny of Boletaceae using whole genome sequences.

Published in:

Mycologia, 2024, v. 116, n. 3, p. 392, doi. 10.1080/00275514.2024.2314963

By:

Tremble, Keaton;
Henkel, Terry;
Bradshaw, Alexander;
Domnauer, Colin;
Brown, Lyda M.;
Thám, Lê Xuân;
Furci, Guliana;
Aime, M. Catherine;
Moncalvo, Jean-Marc;
Dentinger, Bryn

Publication type:

Article

5-Azacytidine downregulates the SABATH methyltransferase genes and augments bixin content in Bixa orellana L. leaves.

Published in:

Plant Cell, Tissue & Organ Culture, 2020, v. 142, n. 2, p. 425, doi. 10.1007/s11240-020-01857-8

By:

Faria, Daniele Vidal;
de Freitas Correia, Ludmila Nayara;
Batista, Diego Silva;
Vital, Camilo Elber;
Heringer, Angelo Schuabb;
De-la-Peña, Clelia;
Costa, Marcio Gilberto Cardoso;
Guerra, Miguel Pedro;
Otoni, Wagner Campos

Publication type:

Article

Enhancement of resistance to PVY in intragenic marker-free potato plants by RNAi-mediated silencing of eIF4E translation initiation factors.

Published in:

Plant Cell, Tissue & Organ Culture, 2020, v. 140, n. 3, p. 691, doi. 10.1007/s11240-019-01746-9

By:

Miroshnichenko, Dmitry;
Timerbaev, Vadim;
Okuneva, Anna;
Klementyeva, Anna;
Sidorova, Tatiana;
Pushin, Alexander;
Dolgov, Sergey

Publication type:

Article

Molecular cloning and functional characterization of the CEP RECEPTOR 1 gene MdCEPR1 of Apple (Malus × domestica).

Published in:

Plant Cell, Tissue & Organ Culture, 2020, v. 140, n. 3, p. 539, doi. 10.1007/s11240-019-01745-w

By:

Li, Rui;
An, Jian-Ping;
You, Chun-Xiang;
Wang, Xiao-Fei;
Hao, Yu-Jin

Publication type:

Article

Expression profiling of WRKY transcription factors in Spinach.

Published in:

Euphytica, 2021, v. 217, n. 12, p. 1, doi. 10.1007/s10681-021-02948-z

By:

Ma, Yaying;
Chen, Shuai;
Yu, Hongying;
Li, Ruoyu;
Lin, Zhicong;
Cai, Mingxing;
Tang, Min;
Zhang, Xingtan;
Ming, Ray

Publication type:

Article

The SAGA of pineapple: genome-wide identification and tissue-specific expression of Spt-Ada-Gcn5-acetyltransferase (SAGA) complex.

Published in:

Euphytica, 2021, v. 217, n. 12, p. 1, doi. 10.1007/s10681-021-02945-2

By:

Pandey, Neha;
Ming, Ray

Publication type:

Article

Structural characterization of the DRF1 gene of Aegilops speltoides and comparison of its sequence with those of B and other Triticeae genomes.

Published in:

Euphytica, 2020, v. 216, n. 10, p. N.PAG, doi. 10.1007/s10681-020-02679-7

By:

Thiyagarajan, Karthikeyan;
Latini, Arianna;
Cantale, Cristina;
Galeffi, Patrizia

Publication type:

Article

Study on the mechanism on synthesis of higher alcohols in Wickerhamomyces anomalus under ethanol stress.

Published in:

Flavour & Fragrance Journal, 2024, v. 39, n. 1, p. 10, doi. 10.1002/ffj.3763

By:

Chen, Yanru;
Wan, Yin;
Cai, Wenqin;
Che, Xiaming;
Peng, Hong;
Fu, Guiming

Publication type:

Article

Protein family FAM241 in human and mouse.

Published in:

Mammalian Genome, 2025, v. 36, n. 1, p. 83, doi. 10.1007/s00335-024-10096-7

By:

Doctrove, Quinlan;
Park, Young;
Calame, Daniel G.;
Kitzman, Jacob;
Lenk, Guy M.;
Meisler, Miriam H.

Publication type:

Article

Comparative genomic studies on the TGF-β superfamily in blue whale.

Published in:

Mammalian Genome, 2024, v. 35, n. 2, p. 228, doi. 10.1007/s00335-024-10031-w

By:

Faiz, Zunaira;
Parveen, Shakeela;
Saeed, Saba;
Tayyab, Muhammad;
Sultana, Mehwish;
Hussain, Muhammad;
Shafqat, Zainab

Publication type:

Article

Highly expressed FAM189B predicts poor prognosis in hepatocellular carcinoma.

Published in:

Pathology & Oncology Research, 2022, p. 01, doi. 10.3389/pore.2022.1610674

By:

Wanshan Ma;
Xiaoning Zhang;
Chenchen Ma;
Peng Liu

Publication type:

Article

Association between Genetic Polymorphisms in Superoxide Dismutase Gene Family and Risk of Gastric Cancer.

Published in:

Pathology & Oncology Research, 2020, v. 26, n. 1, p. 335, doi. 10.1007/s12253-018-0470-0

By:

Eftekhari, Alireza;
Peivand, Zahra;
Saadat, Iraj;
Saadat, Mostafa

Publication type:

Article

Cestodes in the genomic era.

Published in:

Parasitology Research, 2022, v. 121, n. 4, p. 1077, doi. 10.1007/s00436-021-07346-x

By:

Kamenetzky, Laura;
Maldonado, Lucas L.;
Cucher, Marcela A.

Publication type:

Article

Multi-omics analysis of expression profile and prognostic values of connexin family in LUAD.

Published in:

Journal of Cancer Research & Clinical Oncology, 2023, v. 149, n. 14, p. 12791, doi. 10.1007/s00432-023-05075-5

By:

Jiang, Peng;
Huo, Xingfa;
Dong, Bowen;
Zhou, Na;
Zhang, Xiaochun

Publication type:

Article

GNRH family genes contributed to gender-specific disparity of bladder cancer prognosis through exerting opposite regulatory roles between males and females.

Published in:

Journal of Cancer Research & Clinical Oncology, 2023, v. 149, n. 10, p. 6827, doi. 10.1007/s00432-023-04640-2

By:

Song, Yuxuan;
Qin, Caipeng;
Zhang, Chunlong;
Peng, Yun;
Yang, Wenbo;
Du, Yiqing;
Xu, Tao

Publication type:

Article

Comprehensive analysis of the HOXA gene family identifies HOXA13 as a novel oncogenic gene in kidney renal clear cell carcinoma.

Published in:

Journal of Cancer Research & Clinical Oncology, 2020, v. 146, n. 8, p. 1993, doi. 10.1007/s00432-020-03259-x

By:

Cui, Yuanbo;
Yan, Ming;
Zhang, Chunyan;
Xue, Jinhui;
Zhang, Quanwu;
Ma, Shanshan;
Guan, Fangxia;
Cao, Wei

Publication type:

Article

Postmortem detection of COL gene family variants in two aortic dissection cases.

Published in:

2022

By:

Pan, Meichen;
Wang, Yuning;
Li, Lianjie;
Li, Zehao;
Wu, Shifan;
Liu, Qian

Publication type:

Case Study

Defining screening panel of functional variants of CYP1A1, CYP2C9, CYP2C19, CYP2D6, and CYP3A4 genes in Serbian population.

Published in:

International Journal of Legal Medicine, 2020, v. 134, n. 2, p. 433, doi. 10.1007/s00414-019-02234-7

By:

Skadrić, Ivan;
Stojković, Oliver

Publication type:

Article

Population data of 30 insertion-deletion markers in four Chinese populations.

Published in:

International Journal of Legal Medicine, 2015, v. 129, n. 1, p. 53, doi. 10.1007/s00414-014-1091-0

By:

Shi, Meisen;
Liu, Yaju;
Bai, Rufeng;
Jiang, Lizhe;
Lv, Xiaojiao;
Ma, Shuhua

Publication type:

Article

Polypeptide N -acetylgalactosaminyltransferase-Associated Phenotypes in Mammals.

Published in:

Molecules, 2021, v. 26, n. 18, p. 5504, doi. 10.3390/molecules26185504

By:

Kato, Kentaro;
Hansen, Lars;
Clausen, Henrik

Publication type:

Article

Functional Domains and Evolutionary History of the PMEL and GPNMB Family Proteins.

Published in:

Molecules, 2021, v. 26, n. 12, p. 3529, doi. 10.3390/molecules26123529

By:

Chrystal, Paul W.;
Footz, Tim;
Hodges, Elizabeth D.;
Jensen, Justin A.;
Walter, Michael A.;
Allison, W. Ted

Publication type:

Article

Genome-Wide Analysis of the UGT Gene Family and Identification of Flavonoids in Broussonetia papyrifera.

Published in:

Molecules, 2021, v. 26, n. 11, p. 3449, doi. 10.3390/molecules26113449

By:

Wang, Fenfen;
Su, Yalei;
Chen, Naizhi;
Shen, Shihua

Publication type:

Article

Insights into Lignan Composition and Biosynthesis in Stinging Nettle (Urtica dioica L.).

Published in:

Molecules, 2019, v. 24, n. 21, p. 3863, doi. 10.3390/molecules24213863

By:

Xu, Xuan;
Guignard, Cédric;
Renaut, Jenny;
Hausman, Jean-Francois;
Gatti, Edoardo;
Predieri, Stefano;
Guerriero, Gea;
Barker, David

Publication type:

Article

Integration of Metabolite Profiling and Transcriptome Analysis Reveals Genes Related to Volatile Terpenoid Metabolism in Finger Citron (C. medica var. sarcodactylis).

Published in:

Molecules, 2019, v. 24, n. 14, p. 2564, doi. 10.3390/molecules24142564

By:

Xu, Yaying;
Zhu, Changqing;
Xu, Changjie;
Sun, Jun;
Grierson, Donald;
Zhang, Bo;
Chen, Kunsong;
Swiezewska, Ewa

Publication type:

Article

Integrating phylogenetic and functional data in microbiome studies.

Published in:

Bioinformatics, 2022, v. 38, n. 22, p. 5055, doi. 10.1093/bioinformatics/btac655

By:

Douglas, Gavin M;
Hayes, Molly G;
Langille, Morgan G I;
Borenstein, Elhanan

Publication type:

Article

ASTRAL-Pro 2: ultrafast species tree reconstruction from multi-copy gene family trees.

Published in:

Bioinformatics, 2022, v. 38, n. 21, p. 4949, doi. 10.1093/bioinformatics/btac620

By:

Zhang, Chao;
Mirarab, Siavash

Publication type:

Article

Mirage 2.0: fast and memory-efficient reconstruction of gene-content evolution considering heterogeneous evolutionary patterns among gene families.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 4039, doi. 10.1093/bioinformatics/btac433

By:

Fukunaga, Tsukasa;
Iwasaki, Wataru

Publication type:

Article

Simulating domain architecture evolution.

Published in:

Bioinformatics, 2022, v. 38, p. i134, doi. 10.1093/bioinformatics/btac242

By:

Cui, Xiaoyue;
Xue, Yifan;
McCormack, Collin;
Garces, Alejandro;
Rachman, Thomas W;
Yi, Yang;
Stolzer, Maureen;
Durand, Dannie

Publication type:

Article

MCRL: using a reference library to compress a metagenome into a non-redundant list of sequences, considering viruses as a case study.

Published in:

Bioinformatics, 2022, v. 38, n. 3, p. 631, doi. 10.1093/bioinformatics/btab703

By:

Tadmor, Arbel D;
Phillips, Rob

Publication type:

Article

Gene tree and species tree reconciliation with endosymbiotic gene transfer.

Published in:

Bioinformatics, 2021, v. 37, p. i120, doi. 10.1093/bioinformatics/btab328

By:

Anselmetti, Yoann;
El-Mabrouk, Nadia;
Lafond, Manuel;
Ouangraoua, Aïda

Publication type:

Article

PhyloCorrelate: inferring bacterial gene–gene functional associations through large-scale phylogenetic profiling.

Published in:

Bioinformatics, 2021, v. 37, n. 1, p. 17, doi. 10.1093/bioinformatics/btaa1105

By:

Tremblay, Benjamin J -M;
Lobb, Briallen;
Doxey, Andrew C

Publication type:

Article

CAFE 5 models variation in evolutionary rates among gene families.

Published in:

Bioinformatics, 2020, v. 36, n. 22/23, p. 5516, doi. 10.1093/bioinformatics/btaa1022

By:

Mendes, Fábio K;
Vanderpool, Dan;
Fulton, Ben;
Hahn, Matthew W

Publication type:

Article

iHam and pyHam: visualizing and processing hierarchical orthologous groups.

Published in:

Bioinformatics, 2019, v. 35, n. 14, p. 2504, doi. 10.1093/bioinformatics/bty994

By:

Train, Clément-Marie;
Pignatelli, Miguel;
Altenhoff, Adrian;
Dessimoz, Christophe

Publication type:

Article

CAARS: comparative assembly and annotation of RNA-Seq data.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2199, doi. 10.1093/bioinformatics/bty903

By:

Rey, Carine;
Veber, Philippe;
Boussau, Bastien;
Sémon, Marie

Publication type:

Article

Finding associated variants in genome-wide association studies on multiple traits.

Published in:

Bioinformatics, 2018, v. 34, n. 13, p. i467, doi. 10.1093/bioinformatics/bty249

By:

Gai, Lisa;
Eskin, Eleazar

Publication type:

Article

Joint amalgamation of most parsimonious reconciled gene trees.

Published in:

Bioinformatics, 2015, v. 31, n. 6, p. 841, doi. 10.1093/bioinformatics/btu728

By:

Scornavacca, Celine;
Jacox, Edwin;
Szöllösi, Gergely J.

Publication type:

Article

DupliPHY-Web: a web server for DupliPHY and DupliPHY-ML.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 416, doi. 10.1093/bioinformatics/btu645

By:

Ames, Ryan M.;
Lovell, Simon C.

Publication type:

Article

Pareto-optimal phylogenetic tree reconciliation.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i87, doi. 10.1093/bioinformatics/btu289

By:

Libeskind-Hadas, Ran;
Wu, Yi-Chieh;
Bansal, Mukul S.;
Kellis, Manolis

Publication type:

Article

HSP and CD279 gene expression as candidate biomarkers in symptomatic LGLL patients.

Published in:

Discover Oncology, 2024, v. 15, n. 1, p. 1, doi. 10.1007/s12672-024-01657-y

By:

Talarico, Giovanna;
Franceschini, Andrea;
Raveane, Alessandro;
Falvo, Paolo;
Mazzara, Saveria;
Melle, Federica;
Motta, Giovanna;
Orecchioni, Stefania;
Tenore, Annamaria;
Gregato, Giuliana;
Poletti, Claudia;
Chiarle, Roberto;
Pileri, Stefano;
Mancuso, Patrizia;
Bertolini, Francesco

Publication type:

Article

Identification and validation of CCN family genes to predict the prognosis in gastric cancer.

Published in:

Discover Oncology, 2024, v. 15, n. 1, p. 1, doi. 10.1007/s12672-024-01459-2

By:

Chen, Huanting;
Zhang, Xiaomin;
Zhang, Zhe;
Li, Guoqiang;
Li, Xin;
Yang, Siran;
Liu, Yajie;
Yang, Mengqi

Publication type:

Article

B3GALT4 modulates tumor progression and autophagy by AKT/mTOR signaling pathway in breast cancer.

Published in:

Discover Oncology, 2024, v. 15, n. 1, p. 1, doi. 10.1007/s12672-024-01371-9

By:

Sha, Yongliang;
Zhuang, Huijie;
Shi, Jin;
Ge, Song;
He, Shiqing;
Wang, Yiqiu;
Ma, Li;
Guo, Hao;
Cheng, Hui

Publication type:

Article

DDX21 functions as a potential novel oncopromoter in pancreatic ductal adenocarcinoma: a comprehensive analysis of the DExD box family.

Published in:

Discover Oncology, 2024, v. 15, n. 1, p. 1, doi. 10.1007/s12672-024-01204-9

By:

Wu, Shaohan;
Sun, Xiaofang;
Hua, Ruheng;
Hu, Chundong;
Qin, Lei

Publication type:

Article

Nitric oxide is involved in regulating cytochrome P450 gene family and mitochondrial related genes of Pleurotus eryngii in response to cadmium stress: preliminary expression patterns analysis.

Published in:

Environmental Pollutants & Bioavailability, 2023, v. 35, n. 1, p. 316, doi. 10.1080/26395940.2023.2229023

By:

Changsong Zhao;
Huilan Su;
Lin Zhou;
Jun Liu;
Tu Lan;
Lanchai Chen;
Zhaoqiong Chen;
Qiang Li

Publication type:

Article

Comparative genomics unravels a rich set of biosynthetic gene clusters with distinct evolutionary trajectories across fungal species (Termitomyces) farmed by termites.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06887-y

By:

Schmidt, Suzanne;
Murphy, Robert;
Vizueta, Joel;
Schierbech, Signe Kjærsgaard;
Conlon, Benjamin H.;
Kreuzenbeck, Nina B.;
Vreeburg, Sabine M. E.;
van de Peppel, Lennart J. J.;
Aanen, Duur K.;
Silué, Kolotchèlèma S.;
Kone, N'Golo A.;
Beemelmanns, Christine;
Weber, Tilmann;
Poulsen, Michael

Publication type:

Article

Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06681-w

By:

Steindorff, Andrei S.;
Aguilar-Pontes, Maria Victoria;
Robinson, Aaron J.;
Andreopoulos, Bill;
LaButti, Kurt;
Kuo, Alan;
Mondo, Stephen;
Riley, Robert;
Otillar, Robert;
Haridas, Sajeet;
Lipzen, Anna;
Grimwood, Jane;
Schmutz, Jeremy;
Clum, Alicia;
Reid, Ian D.;
Moisan, Marie-Claude;
Butler, Gregory;
Nguyen, Thi Truc Minh;
Dewar, Ken;
Conant, Gavin

Publication type:

Article