Works matching DE "GENETIC transcription regulation"

Results: 3587

ScnR1-Mediated Competitive DNA Binding and Feedback Inhibition Regulate Guvermectin Biosynthesis in Streptomyces caniferus.

Published in:

Biology (2079-7737), 2025, v. 14, n. 7, p. 813, doi. 10.3390/biology14070813

By:

Shi, Haoran;
Wang, Jiabin;
Zhang, Xuedong;
Zhou, Na;
Wang, Xiangjing;
Xiang, Wensheng;
Li, Shanshan;
Zhang, Yanyan

Publication type:

Article

Metabolic Responses, Uptake, and Export of Copper in Cyanobacteria.

Published in:

Biology (2079-7737), 2025, v. 14, n. 7, p. 798, doi. 10.3390/biology14070798

By:

Oder, Jean Coutinho;
Sateles, Thamires Emidio;
de Souza, Laila Barros;
Nunes-Nesi, Adriano;
Araújo, Wagner L.;
Alvarenga-Lucius, Luna

Publication type:

Article

Repression via DNA looping by the Gram-positive global transcriptional regulator ScoC from Geobacillus.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-08555-1

By:

Shulami, Smadar;
Hadad, Noam;
Ghrayeb, Mnar;
Pomyalov, Sergei;
Pazy, Yael;
Chai, Liraz;
Shoham, Yuval;
Shoham, Gil

Publication type:

Article

Pseudohypoxia-Stabilized HIF2α Transcriptionally Inhibits MNRR1 , a Druggable Target in MELAS.

Published in:

Cells (2073-4409), 2025, v. 14, n. 14, p. 1078, doi. 10.3390/cells14141078

By:

Purandare, Neeraja;
Pasupathi, Vignesh;
Xi, Yue;
Rajan, Vikram;
Vegh, Caleb;
Firestine, Steven;
Kozicz, Tamas;
Fribley, Andrew M.;
Grossman, Lawrence I.;
Aras, Siddhesh

Publication type:

Article

A Single-Cell Perspective on the Effects of Dopamine in the Regulation of HIV Latency Phenotypes in a Myeloid Cell Model.

Published in:

Viruses (1999-4915), 2025, v. 17, n. 7, p. 895, doi. 10.3390/v17070895

By:

Basova, Liana V.;
Lim, Wei Ling;
Delorme-Walker, Violaine;
Riley, Tera;
Au, Kaylin;
Lima, Daniel Siqueira;
Lusic, Marina;
Ellis, Ronald J.;
Fox, Howard S.;
Marcondes, Maria Cecilia Garibaldi

Publication type:

Article

AdBSK1-Mediated Hormone Signaling Regulates Flowering Transition in Actinidia deliciosa ' Guichang '.

Published in:

Genes, 2025, v. 16, n. 7, p. 760, doi. 10.3390/genes16070760

By:

Guo, Lina;
Cui, Xiaoyu;
Li, Jiayin;
Zhang, Chao;
Fang, Yumei

Publication type:

Article

Comprehensive Genomic Analysis of GRAS Transcription Factors Reveals Salt-Responsive Expression Profiles in Pecan (Carya illinoinensis).

Published in:

Forests (19994907), 2025, v. 16, n. 7, p. 1199, doi. 10.3390/f16071199

By:

Xu, Ming;
Chen, Yu;
Wang, Guoming

Publication type:

Article

Single-cell transcriptomics of ventral forebrain progenitors identifies Evf2 enhancer lncRNA-enhancer gene guidance through direct RNA binding and RNP recruitment domains.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-62205-y

By:

Li, Edward;
Chakraborty, Abhijit;
Kohtz, Sara J.;
Cajigas, Ivelisse;
Hinojosa-Gonzalez, Laura;
Shiau, Fion;
Bertossi, Ryan;
Vassar, Robert J.;
Kessler, Jack A.;
Ay, Ferhat;
Clark, Brian S.;
Kohtz, Jhumku D.

Publication type:

Article

U-rich elements drive pervasive cryptic splicing in 3' UTR massively parallel reporter assays.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-62000-9

By:

Dao, Khoa;
Jungers, Courtney F.;
Djuranovic, Sergej;
Mustoe, Anthony M.

Publication type:

Article

Improved Degradome Sequencing Protocol via Reagent Recycling from sRNAseq Library Preparations.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 14, p. 7020, doi. 10.3390/ijms26147020

By:

Puchta-Jasińska, Marta;
Groszyk, Jolanta;
Boczkowska, Maja

Publication type:

Article

The Relevance of G-Quadruplexes in Gene Promoters and the First Introns Associated with Transcriptional Regulation in Breast Cancer.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 14, p. 6874, doi. 10.3390/ijms26146874

By:

Shu, Huiling;
Xiao, Ke;
Zhu, Wenyong;
Zhang, Rongxin;
Tao, Tiantong;
Sun, Xiao

Publication type:

Article

Multiomics Integration of Parkinson's Disease Datasets Reveals Unexpected Roles of IRE1 in Its Pathology.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 14, p. 6711, doi. 10.3390/ijms26146711

By:

Pasat, Bianka Alexandra;
Moncan, Matthieu;
Pilalis, Eleftherios;
Samali, Afshin;
Chatziioannou, Aristotelis;
Gorman, Adrienne M.

Publication type:

Article

The Dynamic Regulation of Daxx-Mediated Transcriptional Inhibition by SUMO and PML NBs.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 14, p. 6703, doi. 10.3390/ijms26146703

By:

Gao, Jiatao;
Liu, Tingting;
Yang, Dongmei;
Tuo, Qinhui

Publication type:

Article

A missense mutation in TCFL5 is associated with male infertility due to oligoasthenoteratozoospermia.

Published in:

Molecular Genetics & Genomics, 2025, v. 300, n. 1, p. 1, doi. 10.1007/s00438-025-02278-y

By:

Yu, Kexin;
Zhang, Wenchen;
Wang, Yu;
Xiang, Mingfei;
Zheng, Na;
Zhang, Jingjing;
Zha, Xiaomin;
Duan, Zongliu;
Wang, Fengsong;
Cao, Yunxia;
Zhu, Fuxi

Publication type:

Article

Emerging Orchestrator of Ecological Adaptation: m<sup>6</sup>A Regulation of Post‐Transcriptional Mechanisms.

Published in:

Molecular Ecology, 2025, v. 34, n. 15, p. 1, doi. 10.1111/mec.17545

By:

Ahi, Ehsan Pashay;
Singh, Pooja

Publication type:

Article

Evolution of gene expression across brain regions in behaviourally divergent deer mice.

Published in:

Molecular Ecology, 2025, v. 34, n. 15, p. 1, doi. 10.1111/mec.17270

By:

Kautt, Andreas F.;
Chen, Jenny;
Lewarch, Caitlin L.;
Hu, Caroline;
Turner, Kyle;
Lassance, Jean‐Marc;
Baier, Felix;
Bedford, Nicole L.;
Bendesky, Andres;
Hoekstra, Hopi E.

Publication type:

Article

RBM47 functions as an anti-oncogene by regulating expression and alternative splicing of cell proliferation and apoptosis associated genes in colorectal cancer cells.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-05151-5

By:

Liu, Guangshi;
Li, Tao;
Li, Peng;
Wei, Suyan;
Abulizi, Kamuran

Publication type:

Article

Systematic screen uncovers regulator contributions to chemical cues in Escherichia coli.

Published in:

PLoS Biology, 2025, v. 23, n. 7, p. 1, doi. 10.1371/journal.pbio.3003260

By:

Binsfeld, Christoph;
Olayo-Alarcon, Roberto;
Pérez Jiménez, Lucía;
Wartel, Morgane;
Stadler, Mara;
Mateus, André;
Müller, Christian;
Brochado, Ana Rita

Publication type:

Article

TGFB signaling induces mitophagy via PLSCR3-mediated cardiolipin externalization in conjunction with a BNIP3L/NIX-, BNIP3-, and FUNDC1-dependent mechanism.

Published in:

Autophagy, 2025, v. 21, n. 8, p. 1791, doi. 10.1080/15548627.2025.2483441

By:

Yan, Jiong;
Chen, Xin;
Choksi, Swati;
Liu, Zheng-Gang

Publication type:

Article

An ALOG transcription factor targets a TALE homeobox gene during corolla abscission in Torenia fournieri.

Published in:

New Phytologist, 2025, v. 247, n. 4, p. 1912, doi. 10.1111/nph.70291

By:

Li, Jiahuizi;
Li, Binghou;
Zhou, Xuan;
Ma, Xiaofang;
Xie, Ruohan;
Sun, Yufei;
Su, Shihao

Publication type:

Article

The PHYTOCHROME INTERACTING FACTOR 3, a bHLH transcription factor, promotes thermosensory growth by directly activating PIF4 transcription and its protein accumulation in Arabidopsis.

Published in:

New Phytologist, 2025, v. 247, n. 4, p. 1742, doi. 10.1111/nph.70278

By:

Das, Sreya;
Modak, Annayasa;
Rajkumar, Mohan Singh;
Garhwal, Vikas;
Sethi, Vishmita;
Jain, Mukesh;
Gangappa, Sreeramaiah N.

Publication type:

Article

EGR3 Transcriptionally Upregulates the Expression of DCN in Liver Cancer to Inhibit Tumor Progression.

Published in:

Journal of Biochemical & Molecular Toxicology, 2025, v. 39, n. 7, p. 1, doi. 10.1002/jbt.70399

By:

Yang, Hong;
Sun, Da;
Zhang, Bin;
Yu, Chun

Publication type:

Article

The MYH7 c.2770G > A (p.Glu924Lys) mutation exhibits phenotypic heterogeneity in hypertrophic cardiomyopathy (HCM) and restrictive cardiomyopathy (RCM): a case report.

Published in:

BMC Cardiovascular Disorders, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12872-025-04943-x

By:

Han, Yuanyuan;
Wang, Haiyang;
Zhang, Hongsheng;
Wang, Manman;
Gan, Lijun;
Meng, Fanhua

Publication type:

Article

Expression regulation network in papillae of sea cucumbers: Whole-transcriptome and DNA methylation datasets.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05407-9

By:

Mai, Wenhong;
Sun, Jingxian;
Ning, Bingyu;
Zhao, Tanjun;
Yang, Haochen;
Ren, Liyuan;
Wang, Zengdong;
Cheng, Cao;
Zou, Ange;
Zhan, Yaoyao;
Chang, Yaqing

Publication type:

Article

TCF7 functions as a prognostic biomarker in bladder cancer by strengthening EMT and stemness associated with TGF-β/SMAD3 signaling.

Published in:

Molecular & Cellular Biochemistry, 2025, v. 480, n. 7, p. 4135, doi. 10.1007/s11010-025-05241-y

By:

Zhang, Congcong;
Cai, Haiping;
Ye, Mengnan;
Wang, Le;
Liu, Weiwei;
Huang, Qun;
Peng, Xingsi;
Mao, Guanquan;
Zhang, Qingling;
Mei, Yan

Publication type:

Article

SKA3 promotes lung adenocarcinoma progression via the EGFR/E2F1/SKA3/integrin β1 signaling loop.

Published in:

Molecular & Cellular Biochemistry, 2025, v. 480, n. 7, p. 4213, doi. 10.1007/s11010-025-05242-x

By:

Zheng, Xiufen;
Sun, Zedong;
Wang, Shi;
Liu, Qibing;
Zhu, Biqing;
Ren, Zhijian;
Fan, Dingwei;
Zhang, Chunping;
Fu, Xinyin;
Jin, Yan;
Luo, Jing;
Wang, Jie;
Ren, Binhui

Publication type:

Article

Transcriptome analysis provides new insights into the berry size in ‘Summer Black’ grape under a two-crop-a-year cultivation system.

Published in:

Horticulture Plant Journal, 2025, v. 11, n. 4, p. 1469, doi. 10.1016/j.hpj.2024.02.011

By:

Peiyi Ni;
Shengdi Yang;
Yunzhang Yuan;
Chunyang Zhang;
Hengliang Zhu;
Jing Ma;
Shuangjiang Li;
Guoshun Yang;
Miao Bai

Publication type:

Article

MdWRKY71 as a positive regulator involved in 5-aminolevulinic acid-induced salt tolerance in apple.

Published in:

Horticulture Plant Journal, 2025, v. 11, n. 4, p. 1397, doi. 10.1016/j.hpj.2024.04.004

By:

Yage Li;
Liuzi Zhang;
Zhouyu Yuan;
Jianting Zhang;
Yan Zhong;
Liangju Wang

Publication type:

Article

Nuclear factor IA-mediated transcriptional regulation of crystallin αB inhibits hepatocellular carcinoma progression.

Published in:

Molecular & Clinical Oncology, 2025, v. 23, n. 2, p. N.PAG, doi. 10.3892/mco.2025.2867

By:

Jin, Yun;
Hu, Pingping;
Dai, Yihe;
Gu, Wenchao;
Han, Jiang;
Song, Haihan

Publication type:

Article

Genome-wide characterization of the GmLUX binding preferences and its epigenic features in the soybean genome.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1607224

By:

Tianxiao, Lv;
Xiao, Hong;
Wang, Jingxing;
Zhang, Ling;
Fan, Tian;
Huang, Mingkun;
Tian, Chang-En;
Yang, Hua;
Hu, Yufang

Publication type:

Article

Identification and functional analysis of AvLACS genes unveils their role in lipid homeostasis and waterlogging tolerance in kiwifruit (Actinidia valvata Dunn).

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1580003

By:

Zhang, Meijuan;
Ye, Kaiyu;
Gao, Jianyou;
Liu, Shibiao;
Liu, Ruonan;
Chen, Yuexing;
Zhao, Qian;
Lei, Yushan;
Li, Jiewei;
Liu, Cuixia;
Wang, Faming

Publication type:

Article

Phase separated condensates of ATRX regulate neural progenitor identity.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-61881-0

By:

Tomooka, Ryo;
Sanosaka, Tsukasa;
Miyagi, Tamami;
Andoh-Noda, Tomoko;
Banno, Satoe;
Mizota, Noriko;
Kanekura, Kohsuke;
Okano, Hideyuki;
Kohyama, Jun

Publication type:

Article

Forced expression of MSR repeat transcripts above a threshold limit breaks heterochromatin organisation.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-61586-4

By:

Ching, Reagan W.;
Świst-Rosowska, Kalina M.;
Erikson, Galina;
Koschorz, Birgit;
Engist, Bettina;
Jenuwein, Thomas

Publication type:

Article

Transcriptional regulation and signaling of type IV interferon in Carassius gibelio.

Published in:

Cell Communication & Signaling, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12964-025-02342-5

By:

Dai, Caijiao;
Zhu, Yuting;
Qian, Shiyu;
Fan, Yihui;
Weng, Zekun;
Li, Lijuan;
Wang, Jianghua;
Yuan, Junfa

Publication type:

Article

Comprehensive transcriptional analysis of ethylene and softening regulation in plums with distinct climacteric ripening behaviors.

Published in:

BMC Plant Biology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12870-025-06932-w

By:

Huang, Po-Kai;
Manganaris, George A.;
Gasic, Ksenija;
Saski, Christopher A.;
Beckles, Diane M.;
Crisosto, Carlos H.

Publication type:

Article

KansformerEPI: a deep learning framework integrating KAN and transformer for predicting enhancer–promoter interactions Open Access.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 3, p. 1, doi. 10.1093/bib/bbaf272

By:

Zhang, Tianjiao;
Shao, Saihong;
Zhang, Hongfei;
Zhao, Zhongqian;
Zhao, Xingjie;
Zhang, Xiang;
Wang, Zhenxing;
Wang, Guohua

Publication type:

Article

Chrombus-XMBD: a graph convolution model predicting 3D-genome from chromatin features Open Access.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 3, p. 1, doi. 10.1093/bib/bbaf183

By:

Zeng, Yuanyuan;
You, Zhiyu;
Guo, Jiayang;
Zhao, Jialin;
Zhou, Ying;
Huang, Jialiang;
Lyu, Xiaowen;
Chen, Longbiao;
Li, Qiyuan

Publication type:

Article

IGFBP1 is One of 10 Metabolic Factors Predicting Recurrence Free Survival in Gastric Cancer and Promotes Cancer Progression via ZFX-IGFBP1 Axis.

Published in:

OncoTargets & Therapy, 2025, v. 18, p. 717, doi. 10.2147/OTT.S499695

By:

Liu, Hui;
Huang, Yongming;
Fu, Guanghua;
Lei, Bo;
Liu, Ke

Publication type:

Article

Genome-Wide Identification and Analysis of the AHL Gene Family in Pepper (Capsicum annuum L.).

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6527, doi. 10.3390/ijms26136527

By:

Sui, Xiao-Yan;
Li, Yan-Long;
Wang, Xi;
Zhong, Yi;
Cui, Qing-Zhi;
Luo, Yin;
Tang, Bing-Qian;
Liu, Feng;
Zou, Xue-Xiao

Publication type:

Article

Special Issue "25 Anniversary of Bioinformatics of Genome Regulation and Structure Conference Series".

Published in:

2025

By:

Orlov, Yuriy L.;
Orlova, Nina G.;
Chen, Ming;
Kolchanov, Nikolay A.

Publication type:

Editorial

HIV-1 Tat: Molecular Switch in Viral Persistence and Emerging Technologies for Functional Cure.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6311, doi. 10.3390/ijms26136311

By:

Yu, Kaixin;
Liu, Hanxin;
Pan, Ting

Publication type:

Article

Regulation of Riboflavin Biosynthesis in Microorganisms and Construction of the Advanced Overproducers of This Vitamin.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6243, doi. 10.3390/ijms26136243

By:

Ruchala, Justyna;
Najdecka, Alicja;
Wojdyla, Dominik;
Liu, Wen;
Sibirny, Andriy

Publication type:

Article

Post-Transcriptional Regulation of the MiaA Prenyl Transferase by CsrA and the Small RNA CsrB in Escherichia coli.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6068, doi. 10.3390/ijms26136068

By:

Aubee, Joseph I.;
Williams, Kinlyn;
Adigun, Alexandria;
Olusanya, Olufolakemi;
Nurse, Jalisa;
Thompson, Karl M.

Publication type:

Article

Genome-Wide Identification and Expression Profiling of SlGeBP Gene Family in Response to Hormone and Abiotic Stresses in Solanum lycopersicum L.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6008, doi. 10.3390/ijms26136008

By:

Cao, Haohao;
Wang, Danfeng;
Li, Xiaoli;
Zhang, Yi;
Su, Deding;
Lu, Wang;
Xu, Kedong;
Li, Zhengguo

Publication type:

Article

Global changes in synthesis rates and mRNA stabilities during adaptive responses to cell wall stress in yeast.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-08815-4

By:

García-Martínez, José;
Rodríguez-Peña, Jose M.;
Pérez-Ortín, José E.;
Arroyo, Javier;
García, Raúl

Publication type:

Article

GIGYF2: A Multifunctional Regulator at the Crossroads of Gene Expression, mRNA Surveillance, and Human Disease.

Published in:

Cells (2073-4409), 2025, v. 14, n. 13, p. 1032, doi. 10.3390/cells14131032

By:

Zhao, Chen-Shuo;
Liu, Shu-Han;
Li, Zheng-Yang;
Chen, Jia-Yue;
Xiong, Xiang-Yang

Publication type:

Article

Advances of HDAC inhibitors in tumor therapy: potential applications through immune modulation.

Published in:

Frontiers in Oncology, 2025, p. 1, doi. 10.3389/fonc.2025.1576781

By:

Tian, Jiaqi;
Han, Miaomiao;
Song, Fuyang;
Liu, Yun;
Shen, Yuhou;
Zhong, Jiateng

Publication type:

Article

棘胸蛙 Clock 基因克隆及其转录表达分析.

Published in:

Journal of Guangxi Normal University - Natural Science Edition, 2025, v. 43, n. 3, p. 201, doi. 10.16088/j.issn.1001-6600.2024041603

By:

袁鸿;
汪小冬;
魏秀英;
王加品;
陈以芳;
姚红艳;
陈敦学

Publication type:

Article

Recent advances and applications of mitochondria in tumors and inflammation.

Published in:

Journal of Translational Medicine, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12967-025-06722-w

By:

Liu, Hui;
Pan, Mengmeng;
Li, Yumeng;
Huang, Zhen;
Li, Hanying;
Zhang, Chenguang;
Guo, Chunlei;
Wang, Hui

Publication type:

Article

Nuclear p62/SQSTM1 facilitates ubiquitin-independent proteasomal degradation of BMAL1.

Published in:

PLoS Genetics, 2025, v. 21, n. 7, p. 1, doi. 10.1371/journal.pgen.1011794

By:

Zhang, Chenliang;
Wu, Quanyou;
Zhang, Huan;
Liu, RuiChen;
Li, Liping

Publication type:

Article