Works matching DE "GENOMICS"

Results: 5000

Correction: Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair.

Published in:

2025

By:

McDaniel, Jennifer H.;
Patel, Vaidehi;
Olson, Nathan D.;
He, Hua-Jun;
He, Zhiyong;
Cole, Kenneth D.;
Gooden, Alexander A.;
Schmitt, Anthony;
Sikkink, Kristin;
Sedlazeck, Fritz J.;
Doddapaneni, Harsha;
Jhangiani, Shalini N.;
Muzny, Donna M.;
Gingras, Marie-Claude;
Mehta, Heer;
Behera, Sairam;
Paulin, Luis F.;
Hastie, Alex R.;
Yu, Hung-Chun;
Weigman, Victor

Publication type:

Correction Notice

Chromosome-level genome assembly of the vegetable leafminer Liriomyza sativae (Diptera: Agromyzidae).

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05747-6

By:

Chen, Xulong;
Cai, Xiaodong;
Liu, Jiuzhou;
Ding, Shuangmei;
Fan, Zheng;
Chen, Zhuo;
Yang, Ding

Publication type:

Article

Mendelian randomization analysis: The causal relationship between C-reactive protein and amyloidosis and between C-reactive protein and atherosclerosis.

Published in:

PLoS ONE, 2025, v. 20, n. 8, p. 1, doi. 10.1371/journal.pone.0329612

By:

Liu, Chunhui;
Huang, Xupeng;
Huang, Yongsheng;
Jin, Hongguang

Publication type:

Article

Insights on the sex determination, vector capacity and ecological biology from a chromosomal level genome of vector mosquito, Armigeres subulbatus.

Published in:

Infectious Diseases of Poverty, 2025, v. 14, n. 1, p. 1, doi. 10.1186/s40249-025-01353-1

By:

Liu, Peiwen;
Liu, Feng;
Lu, Hao-Ran;
Gu, Jinbao;
Zhou, Xiaohong;
Wu, Yang;
Zou, Zhen;
Guo, Xiang;
Yang, Wenqiang;
Li, Shan;
Li, Ziyao;
Chen, Xiao-Guang

Publication type:

Article

Phylogenetic and functional analysis of MYB genes unraveling its role involved in anthocyanin biosynthesis in H macrophylla.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-14216-4

By:

Liao, Yingying;
Zhao, Wenwen;
Wang, Yu;
Zhao, Sumeiqi;
Gu, Shiqin;
Zhang, Chao;
Peng, Jiqing;
Sheng, Song;
Wang, Sen

Publication type:

Article

Brucellosis in the omics era: integrative perspectives on Brucella genomic architecture, host-pathogen interactions, and disease dynamics.

Published in:

World Journal of Microbiology & Biotechnology, 2025, v. 41, n. 7, p. 1, doi. 10.1007/s11274-025-04484-7

By:

Kumar, Shashi Bhushan;
Goudar, Giridhar;
Munikumar, Manne;
Arnipalli, Shanvanth R.;
Yaduvanshi, Puneeta Singh;
Panpatil, Virendra V.

Publication type:

Article

Genome-wide identification of the lysine deacetylases gene and its dynamic expression profile during adversity stress and infestation in Arthrinium phaeospermum.

Published in:

World Journal of Microbiology & Biotechnology, 2025, v. 41, n. 7, p. 1, doi. 10.1007/s11274-025-04479-4

By:

Liu, Sijia;
Ye, Ziqi;
Song, Jia;
Liu, Yutong;
Li, Shujiang

Publication type:

Article

Identification and comprehensive genomic characterization of cellulolytic Bacillus species reveal unique CAZyme profiles for leaf litter degradation and compost production.

Published in:

World Journal of Microbiology & Biotechnology, 2025, v. 41, n. 7, p. 1, doi. 10.1007/s11274-025-04474-9

By:

Singh, Arvind Kumar;
Datta, Subhojit;
Dutta, Girindrani;
Goswami, Tinku;
Mukherjee, Pranit;
Majumdar, Bijan;
Kar, Gouranga

Publication type:

Article

From cultivation challenges of Acidobacteriota to biotechnological promises – unveiling what is needed to fully harness their potential.

Published in:

World Journal of Microbiology & Biotechnology, 2025, v. 41, n. 7, p. 1, doi. 10.1007/s11274-025-04433-4

By:

Gonçalves, Osiel Silva;
Fernandes, Alexia Suellen;
de Sousa, Thais Gonzaga Gontijo;
Santana, Mateus Ferreira;
Barreto, Cristine Chaves

Publication type:

Article

The relationship between ACE gene insertion/deletion polymorphism and diabetes retinopathy patients with diabetes type 1.

Published in:

International Journal of Diabetes in Developing Countries, 2025, v. 45, n. 3, p. 764, doi. 10.1007/s13410-024-01378-6

By:

Zafar, Hifsa;
Malik, Imran Riaz;
Bushra, Hafsa;
Alam, Khurshid;
Shakeel, Muhammad;
Ahmed, Iftikhar;
Gul, Hadia;
Elsadek, Mohamed Farouk;
Al-Numair, Khalid S.;
Ahmad, Naveed;
Yasin, Muhammad

Publication type:

Article

Characterization and genome analysis of a novel lytic phage vB_ntSalS-cftriSP11 infecting Salmonella typhimurium.

Published in:

Molecular Biology Reports, 2025, v. 52, n. 1, p. 1, doi. 10.1007/s11033-025-10927-z

By:

Murthy, Nalina;
Bisht, Bhawana;
Bhardwaj, Priya;
Priyadarshini, Poornima

Publication type:

Article

为害灵芝新害虫——白头白果蝇 Leucophenga albiceps.

Published in:

Chinese Journal of Applied Entomology, 2025, v. 62, n. 3, p. 825, doi. 10.7679/j.issn.2095-1353.2025.079

By:

蒲潇;
赵小红;
杨学圳;
宋丹;
肖波;
胡开治;
雷美艳

Publication type:

Article

Liquid-based cytology in the era of multi-omics and artificial intelligence integration.

Published in:

CytoJournal, 2025, v. 22, p. 1, doi. 10.25259/Cytojournal_89_2025

By:

Ahuja, Sana;
Zaheer, Sufian

Publication type:

Article

Construction of a Multi-Omics database for Paeonia lactiflora: A resource for comprehensive data integration and analysis.

Published in:

BMC Plant Biology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12870-025-07032-5

By:

Lu, Zongran;
Huang, Ling;
Bunsupa, Somnuk;
Hamezah, Hamizah Shahirah;
Tong, Xiaohui;
Jin, Chuanshan;
Ou, Jinmei;
Han, Rongchun

Publication type:

Article

Genome-wide identification and analysis of the cytochrome P450 family elucidate flavonoid biosynthesis in safflower.

Published in:

BMC Plant Biology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12870-025-06998-6

By:

Wu, Yao;
Wang, Hualei;
Liu, Hongchang;
Li, Dandan

Publication type:

Article

Genome-wide identification and expression pattern analysis of auxin response factor (ARF) genes in Chionanthus retusus and functional characterization of CrARF37 in terms of its effect on flower shape.

Published in:

BMC Plant Biology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12870-025-06980-2

By:

Wang, Jinnan;
Guo, Liyang;
Li, Ying;
Wu, Yuzhu;
Wang, Mengmeng;
Zhao, Shicong;
Xu, Xu;
Li, Jihong

Publication type:

Article

Biological characterization and genomic analysis of the newly discovered mycobacteriophage WST1.

Published in:

BMC Microbiology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12866-025-04254-3

By:

Tan, Xingyan;
Zhang, Xiaorui;
He, Zhiqun;
Luo, Zhiping;
An, Ni;
Ye, Kerui;
Ke, Donghui;
Li, Yuqing;
Zeng, Jumei

Publication type:

Article

Comparative evaluation of DNA and RNA probes for capture-based mitochondrial DNA next-generation sequencing.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02365-x

By:

Sun, Tianlei;
Li, Shengjing;
Liu, Yang;
Zhou, Kaixiang;
Wang, Jiamin;
Lei, Zhangwen;
Guo, Xu;
Xing, Jinliang;
Guo, Wenjie

Publication type:

Article

Towards testate amoebae genomics and beyond, a wish list...

Published in:

Acta Protozoologica, 2024, v. 63, p. 41, doi. 10.4467/16890027AP.25.005.21212

By:

KOSAKYAN, Anush

Publication type:

Article

Molecular characterisation of the globally invasive freshwater crustacean Cherax quadricarinatus (von Martens, 1868) in Zambia.

Published in:

BioInvasions Record, 2025, v. 14, n. 2, p. 389, doi. 10.3391/bir.2025.14.2.07

By:

Muyumbana, Namakau;
Mudenda, Hangoma;
Stelbrink, Björn;
Albrecht, Christian

Publication type:

Article

MOLECULAR PROFILING AND GENETIC DIVERSITY ASSESSMENT OF RICE (Oryza sativa L.) USING SSR MARKERS.

Published in:

Genetika (0534-0012), 2025, v. 57, n. 1, p. 63, doi. 10.2298/GENSR2501063K

By:

KUMARI, Shruti;
CHAKRABARTY, S. K.;
BHOWMICK, Praloy KUMAR;
DEBASHIS, Paul

Publication type:

Article

Genome-wide identification, characterization and evolutionary analysis of the pyrroline-5-carboxylate synthetase (P5CS), succinic semialdehyde dehydrogenase (SSADH), and dehydrin (DHN) genes in Solanum lycopersicum under drought stress.

Published in:

Journal of Ophthalmic Inflammation & Infection, 2025, v. 15, n. 1, p. 1, doi. 10.1186/s12870-025-07057-w

By:

Maghraby, Amaal;
Alzalaty, Mohamed

Publication type:

Article

Genome‐wide identification of ionotropic receptors and functional analysis of ionotropic co‐receptors in Bemisia tabaci.

Published in:

Pest Management Science, 2025, v. 81, n. 9, p. 5985, doi. 10.1002/ps.8951

By:

Liu, Hangwei;
Di, Zhongjuan;
Wu, Chunyan;
Fu, Yuejun;
Gong, Cheng;
Ma, Lijun;
Luo, Chen

Publication type:

Article

Views Toward Pharmacogenomic Testing Among Patients With Cancer.

Published in:

JAMA Network Open, 2025, v. 8, n. 8, p. e2526714, doi. 10.1001/jamanetworkopen.2025.26714

By:

Shriver, Sharon P.;
Long, Sarah;
Fleury, Mark E.

Publication type:

Article

The quest for a complete understanding of the human genome.

Published in:

Genome Medicine, 2025, v. 17, n. 1, p. 1, doi. 10.1186/s13073-025-01523-8

By:

Abou Tayoun, Ahmad;
Ali, Hamad;
Mokrab, Younes

Publication type:

Article

Evolution of Duplicated Hox Gene Clusters in Land Snails and Slugs.

Published in:

Journal of Experimental Zoology Part B: Molecular & Developmental Evolution, 2025, v. 344, n. 6, p. 363, doi. 10.1002/jez.b.23322

By:

McHale, Finn;
Mulhair, Peter O.;
Holland, Peter W. H.

Publication type:

Article

Characterization of Carbapenemase-producing Enterobacterales isolated from patients returning from Sub-Saharan Africa, France, 2015–2022.

Published in:

Journal of Antimicrobial Chemotherapy (JAC), 2025, v. 80, n. 8, p. 2285, doi. 10.1093/jac/dkaf206

By:

Poignon, Corentin;
Dortet, Laurent;
Birer, Aurélien;
Rezzoug, Inès;
Emeraud, Cécile;
Girlich, Delphine;
Naas, Thierry;
Bonnin, Rémy A;
Jousset, Agnès B

Publication type:

Article

AncestryGeni: a novel genetic ancestry classification pipeline for small and noisy sequence data Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 7, p. 1, doi. 10.1093/bioinformatics/btaf391

By:

Elhaik, Eran;
Behnamian, Sara;
Howe, Michael;
Tang, Hongwei;
Yan, Huihuang;
Tian, Shulan;
Shivaram, Suganti;
Mendoza, Cinthya Zepeda;
MacLachlan, Kylee;
Usmani, Saad;
Pirooznia, Mehdi;
Morgan, Gareth;
Blaney, Patrick;
Maura, Francesco;
Baughn, Linda B

Publication type:

Article

Agptools: a utility suite for editing genome assemblies Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 7, p. 1, doi. 10.1093/bioinformatics/btaf388

By:

Ricemeyer, Edward S;
Carroll, Rachel A;
Warren, Wesley C

Publication type:

Article

DGHNN: a deep graph and hypergraph neural network for pan-cancer related gene prediction Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 7, p. 1, doi. 10.1093/bioinformatics/btaf379

By:

Li, Bing;
Xiao, Xin;
Zhang, Chao;
Xiao, Ming;
Zhang, Le

Publication type:

Article

CAGEcleaner: reducing genomic redundancy in gene cluster mining Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 7, p. 1, doi. 10.1093/bioinformatics/btaf373

By:

Vrieze, Lucas De;
Biltjes, Miguel;
Lukashevich, Sofya;
Tsurumi, Kodai;
Masschelein, Joleen

Publication type:

Article

Rapid Plasmid-Mediated Acquisition of Erythromycin Resistance via ermX in Corynebacterium striatum: A 72-Hour Clinical Evolution.

Published in:

Infection & Drug Resistance, 2025, v. 18, p. 3771, doi. 10.2147/IDR.S531265

By:

Chen, Zongyao;
Jiang, Yayun;
Wang, Dengchao;
Jiang, Shuming

Publication type:

Article

Genomic characterization of tumor mutational burden-high breast carcinomas.

Published in:

NPJ Precision Oncology, 2025, v. 9, n. 1, p. 1, doi. 10.1038/s41698-025-01045-x

By:

Vougiouklakis, Theodore;
Vanderbilt, Chad;
Rana, Satshil;
Mohanty, Abhinita;
Pareja, Fresia;
Brogi, Edi;
Schwartz, Christopher;
Arcila, Maria E.;
Ladanyi, Marc;
Wen, Hanna Y.;
Ross, Dara S.

Publication type:

Article

Clinical impact of single-gene vs. panel sequencing in advanced HR + /HER2− breast cancer: insights and implications.

Published in:

NPJ Breast Cancer, 2025, v. 11, n. 1, p. 1, doi. 10.1038/s41523-025-00805-z

By:

Klocker, Eva Valentina;
Dobrić, Nina;
Graf, Ricarda;
Beichler, Christine;
Hlauschek, Dominik;
Suppan, Christoph;
Pancheri, Lara;
Egle, Daniel;
Albertini, Carmen;
Bartsch, Rupert;
Starzer, Angelika Martina;
Jost, Philipp Jakob;
Rinnerthaler, Gabriel;
Heitzer, Ellen;
Dandachi, Nadia;
Balic, Marija

Publication type:

Article

７株奶牛源牛支原体中国分离株的比较基因组学分析.

Published in:

Journal of Nanjing Agricultural University / Nanjuing Nongye Daxue Xuebao, 2025, v. 48, n. 4, p. 892, doi. 10.7685/jnau.202403037

By:

吴春琳;
王梦瑶;
吴雨伦;
殳婕;
孙学强;
潘子豪;
姚火春

Publication type:

Article

基于共线性长测序数据的单染色体组装方法.

Published in:

Journal of Nanjing Agricultural University / Nanjuing Nongye Daxue Xuebao, 2025, v. 48, n. 4, p. 969, doi. 10.7685/jnau.202403042

By:

李梦然;
甘祥超

Publication type:

Article

Comprehensive in vitro and whole-genome characterization of probiotic properties in Pediococcus acidilactici P10 isolated from Iranian broiler chicken.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-13470-w

By:

Tabashiri, Raana;
Mahmoodian, Sahar;
Pakdel, Mohammad Hossein;
Shariati, Vahid;
Meimandipour, Amir;
Zamani, Javad

Publication type:

Article

Genomic analysis of the 2017 Aotearoa New Zealand outbreak of Mycoplasma bovis and its position within the global population structure.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1600146

By:

Binney, Barbara M.;
Gias, Edna;
Foxwell, Jonathan;
Little, Alvey;
Biggs, Patrick J.;
French, Nigel;
Lambert, Callum;
Ha, Hye Jeong;
Carter, Glen P.;
Gyuranecz, Miklós;
Pardon, Bart;
De Vliegher, Sarne;
Boyen, Filip;
Bokma, Jade;
Krömker, Volker;
Wente, Nicole;
Mahony, Timothy J.;
Gibson, Justine S.;
Barnes, Tamsin S.;
Wawegama, Nadeeka

Publication type:

Article

Isolation, characterization, and genomic analysis of Pediococcus pentosaceus M1 and Staphylococcus capitis D3 nitrate-reducing bacteria from fermented Korean food.

Published in:

3 Biotech, 2025, v. 15, n. 9, p. 1, doi. 10.1007/s13205-025-04414-2

By:

Jeong, Seon-Ung;
Kang, Gyeong-Seok;
Park, Cheon-Seok;
Jung, Jong-Hyun;
Chun, Hyunsoo;
Seo, Dong-Ho;
Shin, Donghyun

Publication type:

Article

SIRPA, BTN3A1, and TDO2 in osteosarcoma: a prognostic triad with therapeutic implications from integrated genomic and pharmacogenomic data.

Published in:

Journal of Orthopaedic Surgery & Research, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s13018-025-06171-7

By:

Zhang, Han-jing;
Yang, Zhi-Jun;
Huang, Wen;
Chen, Dan;
Xiang, Jie;
Chen, Wen-kang

Publication type:

Article

Investigation of the Usability of Polymeric Nanoparticle-Based Transfection Agent for CRISPR/CAS9 in HUVEC Cell Line.

Published in:

Afyon Kocatepe University Journal of Science & Engineering / Afyon Kocatepe Üniversitesi Fen Ve Mühendislik Bilimleri Dergisi, 2025, v. 25, n. 4, p. 712, doi. 10.35414/akufemubid.1584459

By:

İMAMOĞLU, Rizvan;
KAPLAN, Özlem;
GÖK, Mehmet Koray;
GÖKÇE, İsa

Publication type:

Article

A long-term glioblastoma survivor with Lynch syndrome: a case report of tumor molecular and microenvironment characterization.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-03361-x

By:

Zhou, Yiqiang;
Duan, Qianqian;
Han, Tiantian;
Piao, Yueshan;
Tang, Jie

Publication type:

Article

The role of cellular heterogeneity in thyroid cancer: a multi-modal analysis approach with Mendelian randomization.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-03348-8

By:

Qian, Yichun;
Chen, Wei;
Chen, Xinyuan;
Cheng, Shuai;
Liu, Fangzhou

Publication type:

Article

Omics Technologies: Unraveling Abiotic Stress Tolerance Mechanisms for Sustainable Crop Improvement.

Published in:

Journal of Plant Growth Regulation, 2025, v. 44, n. 7, p. 4165, doi. 10.1007/s00344-025-11674-y

By:

Saleem, Muhammad Hamzah;
Noreen, Sana;
Ishaq, Izwa;
Saleem, Ammara;
Khan, Khalid Ali;
Ercisli, Sezai;
Anas, Muhammad;
Khalid, Awais;
Ahmed, Temoor;
Hassan, Ammara;
Fahad, Shah

Publication type:

Article

Exploring the Complete Chloroplast Genomes of Key Lamiaceae Species Uncovers the Secrets of Evolutionary Dynamics and Phylogenetic Relationships.

Published in:

Journal of Plant Growth Regulation, 2025, v. 44, n. 7, p. 3974, doi. 10.1007/s00344-025-11666-y

By:

Alp Furan, Mehmet;
Yildiz, Faruk;
Kaya, Ozkan

Publication type:

Article

Primary cutaneous NUT adnexal carcinoma: morphologic, genetic and methylation analysis of seven new cases with comparison to extracutaneous NUT carcinoma and NUTM1‐rearranged porocarcinoma.

Published in:

Histopathology, 2025, v. 87, n. 3, p. 375, doi. 10.1111/his.15444

By:

Legrand, Mélanie;
Louveau, Baptiste;
Osio, Amélie;
Tallet, Anne;
Calonje, Eduardo;
Scoazec, Jean‐Yves;
de la Fouchardiere, Arnaud;
Tirode, Franck;
Von Deimling, Andreas;
Busam, Klaus;
Shah, Ahmed;
Flaman, Ashley;
Jouenne, Fanélie;
Mourah, Samia;
Pissaloux, Daniel;
Lantuejoul, Sylvie;
French, Christopher A;
Goto, Keisuke;
Cribier, Bernard;
Dehner, Carina A

Publication type:

Article

Six new bacterial species of Marinilabiliales isolated from the marine coastal sediment and reclassified Ancylomarina and Labilibaculum as Marinifilum comb. nov. based on the genome analysis.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1634775

By:

Zhang, Han-Zhe;
Teng, Jin-Hao;
Zhou, Hao-Yu;
Liu, Tian-He;
Lu, De-Chen;
Du, Zong-Jun

Publication type:

Article

Genomic analysis of the 2017 Aotearoa New Zealand outbreak of Mycoplasma bovis and its position within the global population structure.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1600146

By:

Binney, Barbara M.;
Gias, Edna;
Foxwell, Jonathan;
Little, Alvey;
Biggs, Patrick J.;
French, Nigel;
Lambert, Callum;
Ha, Hye Jeong;
Carter, Glen P.;
Gyuranecz, Miklós;
Pardon, Bart;
De Vliegher, Sarne;
Boyen, Filip;
Bokma, Jade;
Krömker, Volker;
Wente, Nicole;
Mahony, Timothy J.;
Gibson, Justine S.;
Barnes, Tamsin S.;
Wawegama, Nadeeka

Publication type:

Article

A likelihood ratio framework for inferring close kinship from dynamically selected SNPs.

Published in:

Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2025.1635734

By:

Ge, Jianye;
Budowle, Bruce;
Cariaso, Michael;
Mittelman, Kristen;
Mittelman, David

Publication type:

Article

The peruvian genome project: expanding the global pool of genome diversity from South America.

Published in:

Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2025.1614021

By:

Guio, Heinner;
Sanchez, Cesar;
Borda, Victor;
Jaramillo-Valverde, Luis;
Caceres, Omar;
Padilla, Carlos;
Trujillo, Omar;
Poterico, Julio A.;
Silva-Carvalho, Carolina;
Horton, Mary;
Lanata, Cristina M.;
Carnevale, Alessandra;
Romero-Hidalgo, Sandra;
Canizales-Quinteros, Samuel;
Acuña-Alonzo, Víctor;
Machacuay-Romero, Marco;
Novoa, Pedro;
Frisancho, Roberto;
Shady, Ruth;
Flores-Villanueva, Pedro

Publication type:

Article