Works matching AU Sankoff, David

Results: 79

Accurate prediction of orthologs in the presence of divergence after duplication.

Published in:

Bioinformatics, 2018, v. 34, n. 13, p. i366, doi. 10.1093/bioinformatics/bty242

By:

Lafond, Manuel;
Miardan, Mona Meghdari;
Sankoff, David

Publication type:

Article

Fractionation, rearrangement and subgenome dominance.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i402, doi. 10.1093/bioinformatics/bts392

By:

Sankoff, David;
Zheng, Chunfang

Publication type:

Article

Excision Dominates Pseudogenization During Fractionation After Whole Genome Duplication and in Gene Loss After Speciation in Plants.

Published in:

Frontiers in Genetics, 2020, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.603056

By:

Yu, Zhe;
Zheng, Chunfang;
Albert, Victor A.;
Sankoff, David

Publication type:

Article

Genetic and molecular control of folate-homocysteine metabolism in mutant mice.

Published in:

Mammalian Genome, 2002, v. 13, n. 5, p. 259, doi. 10.1007/s00335-001-3054-2

By:

Ernest, Sheila;
Christensen, Benedicte;
Gilfix, Brian M.;
Mamer, Orval A.;
Hosack, Angela;
Rodier, Mitchell;
Colmenares, Clemencia;
McGrath, James;
Bale, Allen;
Balling, Rudi;
Sankoff, David;
Rosenblatt, David S.;
Nadeau, Joseph H.

Publication type:

Article

Punctors: A pragmatic variable.

Published in:

Language Variation & Change, 1992, v. 4, n. 2, p. 205, doi. 10.1017/S0954394500000752

By:

Vincent, Diane;
Sankoff, David

Publication type:

Article

The case of the nonce loan in Tamil.

Published in:

Language Variation & Change, 1990, v. 2, n. 1, p. 71, doi. 10.1017/S0954394500000272

By:

Sankoff, David;
Poplack, Shana;
Vanniarajan, Swathi

Publication type:

Article

Statistical evidence for rule ordering.

Published in:

Language Variation & Change, 1989, v. 1, n. 1, p. 1, doi. 10.1017/S0954394500000090

By:

Sankoff, David;
Rousseau, Pascale

Publication type:

Article

A formal production-based explanation of the facts of code-switching.

Published in:

Bilingualism: Language & Cognition, 1998, v. 1, n. 1, p. 39, doi. 10.1017/S136672899800011X

By:

SANKOFF, DAVID

Publication type:

Article

The nuclear genome of Rhazya stricta and the evolution of alkaloid diversity in a medically relevant clade of Apocynaceae.

Published in:

Scientific Reports, 2016, p. 33782, doi. 10.1038/srep33782

By:

Sabir, Jamal S. M.;
Jansen, Robert K.;
Arasappan, Dhivya;
Calderon, Virginie;
Noutahi, Emmanuel;
Zheng, Chunfang;
Park, Seongjun;
Sabir, Meshaal J.;
Baeshen, Mohammed N.;
Hajrah, Nahid H.;
Khiyami, Mohammad A.;
Baeshen, Nabih A.;
Obaid, Abdullah Y.;
Al-Malki, Abdulrahman L.;
Sankoff, David;
El-Mabrouk, Nadia;
Ruhlman, Tracey A.

Publication type:

Article

A branching process for homology distribution-based inference of polyploidy, speciation and loss.

Published in:

Algorithms for Molecular Biology, 2019, v. 14, n. 1, p. N.PAG, doi. 10.1186/s13015-019-0153-8

By:

Zhang, Yue;
Zheng, Chunfang;
Sankoff, David

Publication type:

Article

Listing all sorting reversals in quadratic time.

Published in:

Algorithms for Molecular Biology, 2011, v. 6, n. 1, p. 11, doi. 10.1186/1748-7188-6-11

By:

Swenson, Krister M.;
Badr, Ghada;
Sankoff, David

Publication type:

Article

Gene clusters as intersections of powers of paths.

Published in:

Journal of the Brazilian Computer Society, 2012, v. 18, n. 2, p. 129, doi. 10.1007/s13173-012-0064-8

By:

Costa, Vítor;
Dantas, Simone;
Sankoff, David;
Xu, Ximing

Publication type:

Article

Resolution effects in reconstructing ancestral genomes.

Published in:

BMC Genomics, 2018, v. 19, p. 51, doi. 10.1186/s12864-018-4462-y

By:

Chunfang Zheng;
Yuji Jeong;
Turcotte, Madisyn Gabrielle;
Sankoff, David

Publication type:

Article

Pinning down ploidy in paleopolyploid plants.

Published in:

2018

By:

Zhang, Yue;
Zheng, Chunfang;
Sankoff, David

Publication type:

Abstract

Statistical analysis of fractionation resistance by functional category and expression.

Published in:

BMC Genomics, 2017, v. 18, p. 47, doi. 10.1186/s12864-017-3736-0

By:

Chen, Eric C. H.;
Morin, Annie;
Chauchat, Jean-Hugues;
Sankoff, David

Publication type:

Article

The dynamics of functional classes of plant genes in rediploidized ancient polyploids.

Published in:

BMC Bioinformatics, 2013, v. 14, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-14-S15-S19

By:

Chen, Eric C. H.;
Buen Abad Najar, Carlos Fernando;
Chunfang Zheng;
Brandts, Alex;
Lyons, Eric;
Haibao Tang;
Carretero-Paulet, Lorenzo;
Albert, Victor A.;
Sankoff, David

Publication type:

Article

Practical aliquoting of flowering plant genomes.

Published in:

BMC Bioinformatics, 2013, v. 14, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-14-S15-S8

By:

Chunfang Zheng;
Sankoff, David

Publication type:

Article

Phase change for the accuracy of the median value in estimating divergence time.

Published in:

BMC Bioinformatics, 2013, v. 14, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-14-S15-S7

By:

Jamshidpey, Arash;
Sankoff, David

Publication type:

Article

A consolidation algorithm for genomes fractionated after higher order polyploidization.

Published in:

BMC Bioinformatics, 2012, v. 13, n. Suppl 19, p. 1, doi. 10.1186/1471-2105-13-S19-S8

By:

Jahn, Katharina;
Chunfang Zheng;
Kováč, Jakub;
Sankoff, David

Publication type:

Article

Medians seek the corners, and other conjectures.

Published in:

BMC Bioinformatics, 2012, v. 13, n. Suppl 19, p. 1, doi. 10.1186/1471-2105-13-S19-S5

By:

Haghighi, Maryam;
Sankoff, David

Publication type:

Article

Gene order in rosid phylogeny, inferred from pairwise syntenies among extant genomes.

Published in:

BMC Bioinformatics, 2012, v. 13, n. Suppl 10, p. 1, doi. 10.1186/1471-2105-13-S10-S9

By:

Chunfang Zheng;
Sankoff, David

Publication type:

Article

Generalized adjacency and the conservation of gene clusters in genetic networks defined by synthetic lethals.

Published in:

BMC Bioinformatics, 2012, v. 13, n. Suppl 9, p. 1, doi. 10.1186/1471-2105-13-S9-S8

By:

Zhenyu Yang;
Sankoff, David

Publication type:

Article

Detection of gene expression changes at chromosomal rearrangement breakpoints in evolution.

Published in:

BMC Bioinformatics, 2012, v. 13, n. Suppl 3, p. 1, doi. 10.1186/1471-2105-13-S3-S6

By:

Muñoz, Adriana;
Sankoff, David

Publication type:

Article

Fractionation statistics.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 9, p. 1, doi. 10.1186/1471-2105-12-S9-S5

By:

Baoyong Wang;
Chunfang Zheng;
Sankoff, David

Publication type:

Article

On the PATHGROUPS approach to rapid small phylogeny.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S4

By:

Chunfang Zheng;
Sankoff, David

Publication type:

Article

Scaffold filling, contig fusion and comparativegene order inference.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 304, doi. 10.1186/1471-2105-11-304

By:

Muñoz, Adriana;
Chunfang Zheng;
Qian Zhu;
Albert, Victor A.;
Rounsley, Steve;
Sankoff, David

Publication type:

Article

Genome aliquoting with double cut and join.

Published in:

BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S1-S2

By:

Warren, Robert;
Sankoff, David

Publication type:

Article

Multichromosomal median and halving problems under different genomic distances.

Published in:

BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-120

By:

Tannier, Eric;
Chunfang Zheng;
Sankoff, David

Publication type:

Article

Poisson adjacency distributions in genome comparison: multichromosomal, circular, signed and unsigned cases.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i146

By:

Wei Xu;
Benoît Alain;
David Sankoff

Publication type:

Article

Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i96, doi. 10.1093/bioinformatics/btn146

By:

Chunfang Zheng;
Qian Zhu;
Zaky Adam;
David Sankoff

Publication type:

Article

Polyploids, genome halving and phylogeny.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i433, doi. 10.1093/bioinformatics/btm169

By:

David Sankoff;
Chunfang Zheng;
Qian Zhu

Publication type:

Article

Reversal distance for partially ordered genomes.

Published in:

Bioinformatics, 2005, v. 21, p. i502, doi. 10.1093/bioinformatics/bti1037

By:

Zheng, Chunfang;
Lenert, Aleksander;
Sankoff, David

Publication type:

Article

Reversal distance for partially ordered genomes.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i502

By:

David Sankoff

Publication type:

Article

Genomic features in the breakpoint regions between syntenic blocks.

Published in:

Bioinformatics, 2004, v. 20, n. suppl_1, p. i318, doi. 10.1093/bioinformatics/bth934

By:

Trinh, Phil;
McLysaght, Aoife;
Sankoff, David

Publication type:

Article

Genomic features in the breakpoint regions between syntenic blocks.

Published in:

Bioinformatics, 2004, v. 20, p. i318, doi. 10.1093/bioinformatics/bth934

By:

Trinh, Phil;
McLysaght, Aoife;
Sankoff, David

Publication type:

Article

Short inversions and conserved gene cluster.

Published in:

Bioinformatics, 2002, v. 18, n. 10, p. 1305, doi. 10.1093/bioinformatics/18.10.1305

By:

Sankoff, David

Publication type:

Article

The early introduction of dynamic programming into computational biology.

Published in:

Bioinformatics, 2000, v. 16, n. 1, p. 41, doi. 10.1093/bioinformatics/16.1.41

By:

Sankoff, David

Publication type:

Article

Genome rearrangement with gene families.

Published in:

Bioinformatics, 1999, v. 15, n. 11, p. 909, doi. 10.1093/bioinformatics/15.11.909

By:

Sankoff, David

Publication type:

Article

Identity as the primary determinant of language choice in Valencia.

Published in:

Journal of Sociolinguistics, 2003, v. 7, n. 1, p. 50, doi. 10.1111/1467-9481.00211

By:

Ferrer, Raquel Casesnoves;
Sankoff, David

Publication type:

Article

The monoploid chromosome complement of reconstructed ancestral genomes in a phylogeny.

Published in:

Journal of Bioinformatics & Computational Biology, 2021, v. 19, n. 6, p. 1, doi. 10.1142/S0219720021400084

By:

Xu, Qiaoji;
Zhang, Xiaomeng;
Zhang, Yue;
Zheng, Chunfang;
Leebens-Mack, James H.;
Jin, Lingling;
Sankoff, David

Publication type:

Article

GENE LOSS UNDER NEIGHBORHOOD SELECTION FOLLOWING WHOLE GENOME DUPLICATION AND THE RECONSTRUCTION OF THE ANCESTRAL POPULUS GENOME.

Published in:

Journal of Bioinformatics & Computational Biology, 2009, v. 7, n. 3, p. 499, doi. 10.1142/S0219720009004199

By:

ZHENG, CHUNFANG;
KERR WALL, P.;
LEEBENS-MACK, JAMES;
DE PAMPHILIS, CLAUDE;
ALBERT, VICTOR A.;
SANKOFF, DAVID

Publication type:

Article

GENOME HALVING WITH DOUBLE CUT AND JOIN.

Published in:

Journal of Bioinformatics & Computational Biology, 2009, v. 7, n. 2, p. 357, doi. 10.1142/S0219720009004102

By:

Warren, Robert;
Sankoff, David

Publication type:

Article

INTRODUCTION.

Published in:

Journal of Bioinformatics & Computational Biology, 2008, v. 6, n. 1, p. v, doi. 10.1142/S0219720008003230

By:

Sankoff, David;
Lusheng Wang;
Chin, Franchis

Publication type:

Article

IMPROVING GENE NETWORK INFERENCE BY COMPARING EXPRESSION TIME-SERIES ACROSS SPECIES, DEVELOPMENTAL STAGES OR TISSUES.

Published in:

Journal of Bioinformatics & Computational Biology, 2004, v. 2, n. 4, p. 765, doi. 10.1142/S0219720004000892

By:

BOURQUE, GUILLAUME;
SANKOFF, DAVID

Publication type:

Article

Singularities in the analysis of binomial data.

Published in:

Biometrika, 1978, v. 65, n. 3, p. 603

By:

ROUSSEAU, PASCALE;
SANKOFF, DAVID

Publication type:

Article

Duration of detectible synchrony in a binary branching process.

Published in:

Biometrika, 1971, v. 58, n. 1, p. 77

By:

SANKOFF, DAVID

Publication type:

Article

Comparable rates of gene loss and functional divergence after genome duplications early in...

Published in:

Genetics, 1997, v. 147, n. 3, p. 1259, doi. 10.1093/genetics/147.3.1259

By:

Nadeau, Joseph H.;
Sankoff, David

Publication type:

Article

Synteny conservation and chromosome rearrangements during mammalian evolution.

Published in:

Genetics, 1997, v. 147, n. 1, p. 289, doi. 10.1093/genetics/147.1.289

By:

Ehrlich, Jason;
Sankoff, David

Publication type:

Article

Labov, William (1927–2024).

Published in:

Language Variation & Change, 2024, v. 36, n. 3, p. 355, doi. 10.1017/S0954394525000018

By:

Sankoff, David

Publication type:

Article

POLYPLOIDY AND ANGIOSPERM DIVERSIFICATION.

Published in:

American Journal of Botany, 2009, v. 96, n. 1, p. 336, doi. 10.3732/ajb.0800079

By:

Soltis, Douglas E.;
Albert, Victor A.;
Leebens-Mack, Jim;
Bell, Charles D.;
Paterson, Andrew H.;
Chunfang Zheng;
Sankoff, David;
dePamphilis, Claude W.;
Wall, P. Kerr;
Soltis, Pamela S.

Publication type:

Article