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- Title
NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae.
- Authors
Rambaldi, Davide; Guffanti, Alessandro; Morandi, Paolo; Cassata, Giuseppe
- Abstract
NemaFootPrinter (Nematode Transcription Factor Scan Through Philogenetic Footprinting) is a web-based software for interactive identification of conserved, non-exonic DNA segments in the genomes of C. elegans and C. briggsae. It has been implemented according to the following project specifications:a) Automated identification of orthologous gene pairs. b) Interactive selection of the boundaries of the genes to be compared. c) Pairwise sequence comparison with a range of different methods. d) Identification of putative transcription factor binding sites on conserved, non-exonic DNA segments.
- Publication
BMC bioinformatics, 2005, Vol 6 Suppl 4, pS22
- ISSN
1471-2105
- Publication type
Journal Article
- DOI
10.1186/1471-2105-6-S4-S22