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- Title
Automatically annotating documents with normalized gene lists.
- Authors
Crim, Jeremiah; McDonald, Ryan; Pereira, Fernando
- Abstract
Document gene normalization is the problem of creating a list of unique identifiers for genes that are mentioned within a document. Automating this process has many potential applications in both information extraction and database curation systems. Here we present two separate solutions to this problem. The first is primarily based on standard pattern matching and information extraction techniques. The second and more novel solution uses a statistical classifier to recognize valid gene matches from a list of known gene synonyms.
- Publication
BMC bioinformatics, 2005, Vol 6 Suppl 1, pS13
- ISSN
1471-2105
- Publication type
Journal Article
- DOI
10.1186/1471-2105-6-S1-S13