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- Title
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
- Authors
Kikuchi, Shoshi; Satoh, Kouji; Nagata, Toshifumi; Kawagashira, Nobuyuki; Doi, Koji; Kishimoto, Naoki; Yazaki, Junshi; Ishikawa, Masahiro; Yamada, Hitomi; Ooka, Hisako; Hotta, Isamu; Kojima, Keiichi; Namiki, Takahiro; Ohneda, Eisuke; Yahagi, Wataru; Suzuki, Kohji; Li, Chao Jie; Ohtsuki, Kenji; Shishiki, Toru; Otomo, Yasuhiro; Murakami, Kazuo; Iida, Yoshiharu; Sugano, Sumio; Fujimura, Tatsuto; Suzuki, Yutaka; Tsunoda, Yuki; Kurosaki, Takashi; Kodama, Takeko; Masuda, Hiromi; Kobayashi, Michie; Xie, Quihong; Lu, Min; Narikawa, Ryuya; Sugiyama, Akio; Mizuno, Kouichi; Yokomizo, Satoko; Niikura, Junko; Ikeda, Rieko; Ishibiki, Junya; Kawamata, Midori; Yoshimura, Akemi; Miura, Junichirou; Kusumegi, Takahiro; Oka, Mitsuru; Ryu, Risa; Ueda, Mariko; Matsubara, Kenichi; Kawai, Jun; Carninci, Piero; Adachi, Jun; Aizawa, Katsunori; Arakawa, Takahiro; Fukuda, Shiro; Hara, Ayako; Hashizume, Wataru; Hayatsu, Norihito; Imotani, Koichi; Ishii, Yoshiyuki; Itoh, Masayoshi; Kagawa, Ikuko; Kondo, Shinji; Konno, Hideaki; Miyazaki, Ai; Osato, Naoki; Ota, Yoshimi; Saito, Rintaro; Sasaki, Daisuke; Sato, Kenjiro; Shibata, Kazuhiro; Shinagawa, Akira; Shiraki, Toshiyuki; Yoshino, Masayasu; Hayashizaki, Yoshihide; Yasunishi, Ayako; Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN
- Abstract
We collected and completely sequenced 28,469 full-length complementary DNA clones from Oryza sativa L. ssp. japonica cv. Nipponbare. Through homology searches of publicly available sequence data, we assigned tentative protein functions to 21,596 clones (75.86%). Mapping of the cDNA clones to genomic DNA revealed that there are 19,000 to 20,500 transcription units in the rice genome. Protein informatics analysis against the InterPro database revealed the existence of proteins presented in rice but not in Arabidopsis. Sixty-four percent of our cDNAs are homologous to Arabidopsis proteins.
- Publication
Science (New York, N.Y.), 2003, Vol 301, Issue 5631, p376
- ISSN
1095-9203
- Publication type
Journal Article
- DOI
10.1126/science.1081288